Wall clock time and date at job start Tue Mar 31 2020 05:35:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08997 * 109.47235 * 2 1 4 4 C 1.50693 * 109.47018 * 239.99872 * 2 1 3 5 5 H 1.07998 * 120.00467 * 239.99850 * 4 2 1 6 6 C 1.37876 * 120.00100 * 60.00424 * 4 2 1 7 7 N 1.31517 * 119.99927 * 359.97438 * 6 4 2 8 8 Si 1.86801 * 120.00289 * 179.97438 * 6 4 2 9 9 H 1.48498 * 109.47129 * 0.02562 * 8 6 4 10 10 H 1.48502 * 109.47005 * 120.00012 * 8 6 4 11 11 H 1.48497 * 109.47347 * 239.99609 * 8 6 4 12 12 N 1.46500 * 109.46822 * 120.00253 * 2 1 3 13 13 C 1.34774 * 120.00062 * 274.99749 * 12 2 1 14 14 O 1.21286 * 119.99728 * 0.02562 * 13 12 2 15 15 C 1.50700 * 120.00200 * 180.02562 * 13 12 2 16 16 C 1.53356 * 109.46969 * 180.02562 * 15 13 12 17 17 H 1.08678 * 108.85187 * 55.46566 * 16 15 13 18 18 C 1.52773 * 109.11702 * 294.99680 * 16 15 13 19 19 C 1.52216 * 110.71019 * 179.97438 * 18 16 15 20 20 H 1.11130 * 106.97775 * 169.85152 * 19 18 16 21 21 C 1.52830 * 110.62771 * 285.60016 * 19 18 16 22 22 C 1.51530 * 113.12179 * 51.80731 * 19 18 16 23 23 C 1.51844 * 115.72089 * 316.58476 * 22 19 18 24 24 C 1.53117 * 111.03647 * 279.84914 * 23 22 19 25 25 C 1.54424 * 107.99606 * 162.33883 * 23 22 19 26 26 C 1.52463 * 112.46613 * 43.63336 * 23 22 19 27 27 H 1.08994 * 109.47101 * 299.99888 * 1 2 3 28 28 H 1.09001 * 109.47011 * 60.00208 * 1 2 3 29 29 H 1.09004 * 109.47151 * 179.97438 * 1 2 3 30 30 H 0.97002 * 119.99984 * 180.02562 * 7 6 4 31 31 H 0.97006 * 120.00313 * 95.00414 * 12 2 1 32 32 H 1.08994 * 109.47102 * 60.00382 * 15 13 12 33 33 H 1.08999 * 109.47175 * 300.00151 * 15 13 12 34 34 H 1.09319 * 109.18700 * 59.22463 * 18 16 15 35 35 H 1.09312 * 109.20814 * 300.68658 * 18 16 15 36 36 H 1.09001 * 109.47398 * 59.99503 * 21 19 18 37 37 H 1.08997 * 109.47387 * 179.97438 * 21 19 18 38 38 H 1.09004 * 109.46766 * 299.99770 * 21 19 18 39 39 H 1.10244 * 108.74727 * 79.00703 * 22 19 18 40 40 H 1.10223 * 108.78840 * 194.07883 * 22 19 18 41 41 H 1.09000 * 109.46741 * 185.16102 * 24 23 22 42 42 H 1.09001 * 109.47091 * 305.15943 * 24 23 22 43 43 H 1.09001 * 109.46905 * 65.16661 * 24 23 22 44 44 H 1.08999 * 109.47014 * 298.30389 * 25 23 22 45 45 H 1.09004 * 109.47526 * 58.30119 * 25 23 22 46 46 H 1.08995 * 109.47138 * 178.30172 * 25 23 22 47 47 H 1.09302 * 109.43142 * 186.84901 * 26 23 22 48 48 H 1.09301 * 109.44144 * 67.97161 * 26 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6532 -1.5885 -1.1314 6 6 1.6993 -0.2393 -2.4827 7 7 0.9429 0.8297 -2.6034 8 14 2.3225 -1.1195 -4.0079 9 1 3.1473 -2.2864 -3.6038 10 1 1.1678 -1.5865 -4.8165 11 1 3.1472 -0.1858 -4.8161 12 7 2.0183 -0.6907 1.1962 13 6 2.1470 -0.0184 2.3571 14 8 1.8582 1.1583 2.4117 15 6 2.6498 -0.7287 3.5875 16 6 2.7007 0.2565 4.7616 17 1 1.7173 0.7008 4.8900 18 6 3.7371 1.3383 4.4624 19 6 3.8171 2.3385 5.6070 20 1 4.7045 2.9796 5.4164 21 6 2.6002 3.2632 5.6000 22 6 4.0146 1.6819 6.9583 23 6 3.1670 0.4501 7.2227 24 6 1.7463 0.8398 7.6403 25 6 3.8000 -0.3207 8.4016 26 6 3.1192 -0.4922 6.0250 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 0.7083 1.1609 -3.4844 31 1 2.2491 -1.6319 1.1526 32 1 3.6491 -1.1204 3.3979 33 1 1.9776 -1.5510 3.8325 34 1 3.4595 1.8569 3.5410 35 1 4.7141 0.8700 4.3168 36 1 1.6926 2.6702 5.7122 37 1 2.6763 3.9702 6.4261 38 1 2.5637 3.8084 4.6569 39 1 5.0766 1.4063 7.0665 40 1 3.8107 2.4243 7.7470 41 1 1.1886 -0.0566 7.9115 42 1 1.7911 1.5129 8.4965 43 1 1.2480 1.3404 6.8100 44 1 4.8063 -0.6387 8.1292 45 1 3.8483 0.3284 9.2760 46 1 3.1922 -1.1956 8.6318 47 1 2.4037 -1.2947 6.2221 48 1 4.1063 -0.9356 5.8713 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000408009795.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:29 Heat of formation + Delta-G solvation = -87.552406 kcal Electronic energy + Delta-G solvation = -23333.192250 eV Core-core repulsion = 20192.987489 eV Total energy + Delta-G solvation = -3140.204761 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.97755 -38.45815 -34.91725 -34.01806 -33.11015 -32.29853 -29.22658 -27.60966 -26.90917 -26.53365 -26.04548 -25.22101 -21.91816 -20.78225 -20.09303 -19.21874 -17.94562 -16.92234 -15.72818 -15.39318 -15.07271 -14.92161 -14.45214 -14.34591 -14.14840 -13.79570 -13.52941 -13.18313 -12.77096 -12.55210 -12.32539 -12.24172 -12.10927 -11.81348 -11.64499 -11.57416 -11.42079 -11.05465 -11.04185 -10.94901 -10.86852 -10.69093 -10.67978 -10.60221 -10.26303 -10.22126 -10.05471 -9.95783 -9.66349 -9.00672 -8.77879 -8.52415 -7.81701 -6.10577 -4.19549 3.24249 3.32023 3.34770 3.51802 4.16073 4.39944 4.60321 4.64268 4.73527 5.05814 5.17260 5.21478 5.23353 5.26481 5.37091 5.43781 5.54524 5.56377 5.58993 5.72790 5.76811 5.79235 5.86523 5.88082 5.91038 5.91900 6.00772 6.07565 6.12348 6.17142 6.22154 6.27070 6.46307 6.49077 6.56642 6.72117 6.81452 6.86664 7.00813 7.19324 7.53098 7.61726 7.73359 7.95688 8.18473 8.74605 8.82692 9.23038 9.48803 10.95369 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.032915 B = 0.003449 C = 0.003369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 850.481732 B = 8116.127841 C = 8308.883173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.264 3.736 3 H 0.047 0.953 4 C -0.532 4.532 5 H 0.061 0.939 6 C 0.065 3.935 7 N -0.884 5.884 8 Si 0.901 3.099 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.283 1.283 12 N -0.713 5.713 13 C 0.499 3.501 14 O -0.552 6.552 15 C -0.142 4.142 16 C -0.064 4.064 17 H 0.080 0.920 18 C -0.114 4.114 19 C -0.081 4.081 20 H 0.054 0.946 21 C -0.144 4.144 22 C -0.096 4.096 23 C -0.056 4.056 24 C -0.144 4.144 25 C -0.145 4.145 26 C -0.102 4.102 27 H 0.014 0.986 28 H 0.089 0.911 29 H 0.025 0.975 30 H 0.263 0.737 31 H 0.387 0.613 32 H 0.084 0.916 33 H 0.083 0.917 34 H 0.089 0.911 35 H 0.049 0.951 36 H 0.058 0.942 37 H 0.044 0.956 38 H 0.056 0.944 39 H 0.052 0.948 40 H 0.054 0.946 41 H 0.051 0.949 42 H 0.050 0.950 43 H 0.063 0.937 44 H 0.052 0.948 45 H 0.050 0.950 46 H 0.052 0.948 47 H 0.058 0.942 48 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.746 -2.224 19.293 19.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.162 3.838 3 H 0.065 0.935 4 C -0.571 4.571 5 H 0.079 0.921 6 C -0.138 4.138 7 N -0.521 5.521 8 Si 0.728 3.272 9 H -0.198 1.198 10 H -0.209 1.209 11 H -0.209 1.209 12 N -0.361 5.361 13 C 0.285 3.715 14 O -0.431 6.431 15 C -0.182 4.182 16 C -0.083 4.083 17 H 0.098 0.902 18 C -0.151 4.151 19 C -0.100 4.100 20 H 0.073 0.927 21 C -0.202 4.202 22 C -0.133 4.133 23 C -0.056 4.056 24 C -0.201 4.201 25 C -0.202 4.202 26 C -0.139 4.139 27 H 0.033 0.967 28 H 0.107 0.893 29 H 0.044 0.956 30 H 0.073 0.927 31 H 0.219 0.781 32 H 0.102 0.898 33 H 0.102 0.898 34 H 0.107 0.893 35 H 0.068 0.932 36 H 0.077 0.923 37 H 0.063 0.937 38 H 0.075 0.925 39 H 0.071 0.929 40 H 0.073 0.927 41 H 0.070 0.930 42 H 0.069 0.931 43 H 0.082 0.918 44 H 0.071 0.929 45 H 0.069 0.931 46 H 0.071 0.929 47 H 0.077 0.923 48 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 4.469 -1.250 19.163 19.717 hybrid contribution 0.442 -1.019 -0.926 1.446 sum 4.911 -2.269 18.237 19.023 Atomic orbital electron populations 1.22067 0.98624 0.98975 1.00807 1.18699 0.90917 0.93958 0.80222 0.93469 1.21278 1.32240 1.13130 0.90428 0.92107 1.24897 0.94857 0.94967 0.99063 1.69918 1.35990 1.22532 1.23698 0.86409 0.78602 0.79533 0.82640 1.19753 1.20900 1.20888 1.46561 1.65279 1.13484 1.10748 1.20497 0.78565 0.87645 0.84818 1.90606 1.51229 1.16103 1.85181 1.21874 1.02446 0.99456 0.94427 1.20730 1.00451 0.94962 0.92161 0.90182 1.21593 0.97815 0.96523 0.99174 1.20727 0.98402 0.96527 0.94332 0.92733 1.21877 0.98428 0.98682 1.01169 1.21275 0.99006 0.96245 0.96796 1.20334 0.95430 0.95007 0.94800 1.22036 0.95877 1.01033 1.01195 1.22291 1.00368 0.99805 0.97775 1.21549 1.01318 0.97232 0.93837 0.96692 0.89271 0.95615 0.92681 0.78098 0.89800 0.89841 0.89287 0.93210 0.92284 0.93660 0.92465 0.92917 0.92720 0.93000 0.93110 0.91822 0.92938 0.93057 0.92858 0.92288 0.92221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.68 9.26 37.16 0.34 -3.34 16 2 C 0.26 6.77 2.56 -69.08 -0.18 6.59 16 3 H 0.05 1.40 7.58 -51.93 -0.39 1.00 16 4 C -0.53 -14.23 8.73 -34.44 -0.30 -14.53 16 5 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 6 C 0.07 1.77 5.30 -17.82 -0.09 1.67 16 7 N -0.88 -25.11 11.32 55.43 0.63 -24.49 16 8 Si 0.90 20.76 29.54 -169.99 -5.02 15.74 16 9 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 10 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 11 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 12 N -0.71 -14.86 5.07 -54.93 -0.28 -15.14 16 13 C 0.50 9.73 7.50 -10.99 -0.08 9.65 16 14 O -0.55 -12.67 13.61 5.55 0.08 -12.59 16 15 C -0.14 -1.99 5.16 -27.70 -0.14 -2.13 16 16 C -0.06 -0.85 1.65 -90.70 -0.15 -1.00 16 17 H 0.08 1.20 5.98 -52.11 -0.31 0.89 16 18 C -0.11 -1.60 4.36 -27.25 -0.12 -1.71 16 19 C -0.08 -0.98 2.60 -91.85 -0.24 -1.22 16 20 H 0.05 0.65 8.29 -50.70 -0.42 0.23 16 21 C -0.14 -1.81 8.90 37.07 0.33 -1.48 16 22 C -0.10 -0.98 4.13 -28.06 -0.12 -1.10 16 23 C -0.06 -0.54 0.71 -154.56 -0.11 -0.65 16 24 C -0.14 -1.40 8.02 37.22 0.30 -1.11 16 25 C -0.15 -1.22 8.08 37.90 0.31 -0.91 16 26 C -0.10 -1.08 3.77 -27.15 -0.10 -1.18 16 27 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.09 2.44 6.07 -51.93 -0.32 2.13 16 29 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 31 H 0.39 7.02 8.54 -40.82 -0.35 6.67 16 32 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 33 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 34 H 0.09 1.57 5.85 -51.75 -0.30 1.26 16 35 H 0.05 0.66 8.17 -51.75 -0.42 0.24 16 36 H 0.06 0.77 4.97 -51.93 -0.26 0.51 16 37 H 0.04 0.49 8.05 -51.93 -0.42 0.07 16 38 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.05 0.52 7.94 -51.22 -0.41 0.11 16 40 H 0.05 0.53 7.87 -51.23 -0.40 0.13 16 41 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 42 H 0.05 0.45 8.08 -51.93 -0.42 0.03 16 43 H 0.06 0.70 4.76 -51.93 -0.25 0.45 16 44 H 0.05 0.43 8.08 -51.93 -0.42 0.01 16 45 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 46 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 47 H 0.06 0.59 8.13 -51.76 -0.42 0.17 16 48 H 0.06 0.61 8.11 -51.76 -0.42 0.19 16 LS Contribution 359.22 15.07 5.41 5.41 Total: -1.00 -29.40 359.22 -8.39 -37.78 By element: Atomic # 1 Polarization: 14.59 SS G_CDS: -8.85 Total: 5.74 kcal Atomic # 6 Polarization: -12.10 SS G_CDS: -0.35 Total: -12.46 kcal Atomic # 7 Polarization: -39.97 SS G_CDS: 0.35 Total: -39.63 kcal Atomic # 8 Polarization: -12.67 SS G_CDS: 0.08 Total: -12.59 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.74 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -29.40 -8.39 -37.78 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408009795.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.770 kcal (2) G-P(sol) polarization free energy of solvation -29.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.782 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds