Wall clock time and date at job start Tue Mar 31 2020 06:03:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08996 * 109.47145 * 2 1 4 4 C 1.52991 * 109.47302 * 239.99321 * 2 1 3 5 5 C 1.50693 * 109.47338 * 175.99903 * 4 2 1 6 6 H 1.08003 * 119.99933 * 0.02562 * 5 4 2 7 7 C 1.37882 * 120.00391 * 180.02562 * 5 4 2 8 8 N 1.31512 * 120.00185 * 179.97438 * 7 5 4 9 9 Si 1.86799 * 119.99503 * 359.97438 * 7 5 4 10 10 H 1.48499 * 109.47150 * 90.00600 * 9 7 5 11 11 H 1.48501 * 109.46839 * 210.00050 * 9 7 5 12 12 H 1.48499 * 109.47359 * 329.99813 * 9 7 5 13 13 N 1.46901 * 109.46857 * 119.99297 * 2 1 3 14 14 C 1.46850 * 111.00315 * 289.39449 * 13 2 1 15 15 C 1.53039 * 109.52144 * 185.84105 * 14 13 2 16 16 C 1.53115 * 109.27874 * 300.81373 * 15 14 13 17 17 O 1.42893 * 109.52625 * 177.56238 * 16 15 14 18 18 C 1.42896 * 114.00173 * 150.00016 * 17 16 15 19 19 C 1.54886 * 110.48649 * 93.24483 * 18 17 16 20 20 C 1.55245 * 102.58912 * 156.67481 * 19 18 17 21 21 C 1.54266 * 104.22901 * 322.08428 * 20 19 18 22 22 C 1.53867 * 106.60034 * 23.60993 * 21 20 19 23 23 C 1.53117 * 109.15986 * 57.65520 * 16 15 14 24 24 C 1.46848 * 110.99745 * 53.60232 * 13 2 1 25 25 H 1.09005 * 109.47067 * 300.00844 * 1 2 3 26 26 H 1.09003 * 109.46498 * 60.00301 * 1 2 3 27 27 H 1.08991 * 109.47235 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47303 * 296.00126 * 4 2 1 29 29 H 1.09003 * 109.47055 * 56.00034 * 4 2 1 30 30 H 0.96996 * 119.99922 * 179.97438 * 8 7 5 31 31 H 1.08995 * 109.46379 * 65.81732 * 14 13 2 32 32 H 1.09003 * 109.44541 * 305.84494 * 14 13 2 33 33 H 1.09003 * 109.49964 * 180.87498 * 15 14 13 34 34 H 1.09000 * 109.53619 * 60.77910 * 15 14 13 35 35 H 1.08997 * 109.52109 * 297.69087 * 16 15 14 36 36 H 1.08999 * 110.43465 * 330.69897 * 18 17 16 37 37 H 1.08994 * 110.75708 * 275.06855 * 19 18 17 38 38 H 1.09004 * 110.75703 * 38.43747 * 19 18 17 39 39 H 1.09002 * 110.46858 * 203.39229 * 20 19 18 40 40 H 1.09002 * 110.57861 * 80.83331 * 20 19 18 41 41 H 1.09004 * 110.02919 * 264.32055 * 21 20 19 42 42 H 1.08999 * 110.07019 * 142.91676 * 21 20 19 43 43 H 1.09003 * 110.03512 * 240.71656 * 22 21 20 44 44 H 1.09005 * 110.07419 * 119.30839 * 22 21 20 45 45 H 1.09003 * 109.50246 * 62.28573 * 23 16 15 46 46 H 1.08999 * 109.50530 * 182.40046 * 23 16 15 47 47 H 1.09000 * 109.46536 * 294.17028 * 24 13 2 48 48 H 1.08993 * 109.46619 * 54.14160 * 24 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7213 -1.2491 5 6 3.5438 -0.6361 -1.2996 6 1 4.0819 -0.1194 -0.5187 7 6 4.2326 -1.2177 -2.3429 8 7 5.5449 -1.1428 -2.3873 9 14 3.3019 -2.1119 -3.6932 10 1 2.9627 -1.1556 -4.7775 11 1 4.1498 -3.2010 -4.2411 12 1 2.0534 -2.6901 -3.1346 13 7 2.0197 -0.6924 1.1995 14 6 1.7659 0.1037 2.4072 15 6 2.4156 -0.5769 3.6142 16 6 1.8327 -1.9835 3.7758 17 8 2.4762 -2.6447 4.8669 18 6 1.6489 -3.5959 5.5397 19 6 1.8571 -5.0112 4.9461 20 6 1.4117 -5.9356 6.1111 21 6 1.9253 -5.2222 7.3788 22 6 2.0761 -3.7347 7.0156 23 6 2.0675 -2.7759 2.4869 24 6 1.4281 -2.0316 1.3124 25 1 -0.3633 0.5140 0.8900 26 1 -0.3632 0.5138 -0.8901 27 1 -0.3633 -1.0276 0.0005 28 1 1.7365 -1.7676 -1.2139 29 1 1.6194 -0.2507 -2.1377 30 1 6.0295 -1.5522 -3.1210 31 1 0.6912 0.1838 2.5702 32 1 2.1893 1.1001 2.2806 33 1 2.2138 0.0061 4.5128 34 1 3.4923 -0.6447 3.4586 35 1 0.7627 -1.9140 3.9719 36 1 0.6009 -3.3040 5.4718 37 1 1.2264 -5.1591 4.0696 38 1 2.9062 -5.1768 4.7009 39 1 1.8711 -6.9193 6.0142 40 1 0.3255 -6.0238 6.1365 41 1 2.8903 -5.6343 7.6740 42 1 1.2065 -5.3375 8.1901 43 1 3.1144 -3.4246 7.1344 44 1 1.4304 -3.1273 7.6499 45 1 3.1386 -2.8785 2.3128 46 1 1.6172 -3.7641 2.5800 47 1 0.3549 -1.9417 1.4807 48 1 1.6058 -2.5861 0.3910 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000411208003.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:34 Heat of formation + Delta-G solvation = -63.356247 kcal Electronic energy + Delta-G solvation = -23344.468084 eV Core-core repulsion = 20205.312547 eV Total energy + Delta-G solvation = -3139.155537 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.60941 -38.39442 -36.23543 -33.82397 -32.15348 -30.59893 -29.48303 -28.83382 -27.79676 -27.47086 -23.79926 -22.96723 -22.24051 -20.91959 -20.45642 -19.84380 -18.68327 -17.09511 -16.53621 -16.05650 -15.55260 -14.93553 -14.57267 -14.45978 -14.02540 -13.95211 -13.59573 -13.34923 -13.20336 -12.63318 -12.55995 -12.31530 -12.13235 -12.01712 -11.80107 -11.54887 -11.41517 -11.39722 -11.21505 -10.97646 -10.90333 -10.69610 -10.61358 -10.52607 -10.39224 -10.30099 -10.01678 -9.63456 -9.51253 -9.22804 -8.97175 -8.39985 -7.49292 -5.88192 -3.82074 3.36423 3.44489 3.46330 3.66889 4.42279 4.46816 4.47795 4.56106 4.73385 5.01265 5.08744 5.10690 5.28308 5.29636 5.32577 5.41916 5.45165 5.46650 5.51348 5.61207 5.64598 5.69431 5.70263 5.74949 5.80598 5.84593 5.89739 5.92297 5.99317 6.06377 6.07591 6.14025 6.14856 6.23749 6.32724 6.45913 6.49810 6.59353 6.67329 6.81188 7.13008 7.36305 7.43790 7.81951 7.85493 7.99227 8.75145 9.25269 9.74730 11.25912 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.020729 B = 0.004005 C = 0.003722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1350.452565 B = 6989.960222 C = 7520.204833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.096 3.904 3 H 0.076 0.924 4 C -0.007 4.007 5 C -0.489 4.489 6 H 0.079 0.921 7 C 0.062 3.938 8 N -0.907 5.907 9 Si 0.872 3.128 10 H -0.280 1.280 11 H -0.290 1.290 12 H -0.269 1.269 13 N -0.508 5.508 14 C 0.058 3.942 15 C -0.111 4.111 16 C 0.094 3.906 17 O -0.371 6.371 18 C 0.084 3.916 19 C -0.147 4.147 20 C -0.125 4.125 21 C -0.122 4.122 22 C -0.123 4.123 23 C -0.136 4.136 24 C 0.059 3.941 25 H 0.043 0.957 26 H 0.056 0.944 27 H 0.052 0.948 28 H 0.016 0.984 29 H 0.013 0.987 30 H 0.259 0.741 31 H 0.023 0.977 32 H 0.076 0.924 33 H 0.063 0.937 34 H 0.082 0.918 35 H 0.050 0.950 36 H 0.062 0.938 37 H 0.068 0.932 38 H 0.079 0.921 39 H 0.066 0.934 40 H 0.064 0.936 41 H 0.065 0.935 42 H 0.063 0.937 43 H 0.077 0.923 44 H 0.065 0.935 45 H 0.083 0.917 46 H 0.060 0.940 47 H 0.022 0.978 48 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.695 -5.216 17.269 21.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C -0.012 4.012 3 H 0.094 0.906 4 C -0.044 4.044 5 C -0.528 4.528 6 H 0.098 0.902 7 C -0.138 4.138 8 N -0.548 5.548 9 Si 0.700 3.300 10 H -0.206 1.206 11 H -0.216 1.216 12 H -0.194 1.194 13 N -0.231 5.231 14 C -0.070 4.070 15 C -0.149 4.149 16 C 0.036 3.964 17 O -0.290 6.290 18 C 0.026 3.974 19 C -0.185 4.185 20 C -0.162 4.162 21 C -0.160 4.160 22 C -0.161 4.161 23 C -0.174 4.174 24 C -0.069 4.069 25 H 0.062 0.938 26 H 0.075 0.925 27 H 0.071 0.929 28 H 0.034 0.966 29 H 0.031 0.969 30 H 0.069 0.931 31 H 0.041 0.959 32 H 0.094 0.906 33 H 0.082 0.918 34 H 0.101 0.899 35 H 0.068 0.932 36 H 0.080 0.920 37 H 0.086 0.914 38 H 0.098 0.902 39 H 0.085 0.915 40 H 0.083 0.917 41 H 0.084 0.916 42 H 0.082 0.918 43 H 0.095 0.905 44 H 0.084 0.916 45 H 0.102 0.898 46 H 0.078 0.922 47 H 0.040 0.960 48 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -10.836 -5.283 17.174 20.983 hybrid contribution -1.554 -0.533 -0.862 1.855 sum -12.390 -5.815 16.312 21.293 Atomic orbital electron populations 1.22567 0.99777 1.01320 1.00938 1.21681 0.89805 0.98493 0.91219 0.90630 1.19685 0.98042 0.95235 0.91459 1.21053 0.89218 1.34142 1.08345 0.90250 1.25009 0.94652 0.96305 0.97818 1.69911 1.06309 1.46174 1.32388 0.86918 0.80213 0.79963 0.82913 1.20624 1.21638 1.19394 1.61990 1.58349 1.01615 1.01152 1.22025 0.97151 0.97525 0.90315 1.21640 1.02569 0.93503 0.97201 1.22251 0.95088 0.92718 0.86302 1.87951 1.39797 1.55271 1.46022 1.23025 0.93687 0.88710 0.91959 1.23130 1.02655 0.94940 0.97766 1.22344 1.00593 0.98674 0.94633 1.22075 1.01316 0.94847 0.97729 1.22187 1.02894 0.96424 0.94579 1.22145 1.03539 0.97839 0.93885 1.22029 0.94702 0.91204 0.98951 0.93813 0.92518 0.92903 0.96564 0.96903 0.93100 0.95865 0.90564 0.91787 0.89919 0.93200 0.92041 0.91371 0.90244 0.91483 0.91733 0.91581 0.91850 0.90454 0.91588 0.89807 0.92164 0.95972 0.89591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.99 8.44 37.16 0.31 -2.68 16 2 C 0.10 1.87 2.26 -67.71 -0.15 1.72 16 3 H 0.08 1.52 7.97 -51.93 -0.41 1.10 16 4 C -0.01 -0.16 3.43 -27.89 -0.10 -0.26 16 5 C -0.49 -13.88 9.37 -34.44 -0.32 -14.20 16 6 H 0.08 2.47 7.99 -52.48 -0.42 2.05 16 7 C 0.06 1.81 5.47 -17.82 -0.10 1.71 16 8 N -0.91 -28.47 13.96 55.43 0.77 -27.69 16 9 Si 0.87 21.96 27.47 -169.99 -4.67 17.29 16 10 H -0.28 -6.95 7.11 56.52 0.40 -6.54 16 11 H -0.29 -7.32 7.11 56.52 0.40 -6.91 16 12 H -0.27 -6.49 6.54 56.52 0.37 -6.12 16 13 N -0.51 -9.48 4.29 -226.69 -0.97 -10.46 16 14 C 0.06 0.90 5.14 -3.83 -0.02 0.88 16 15 C -0.11 -1.62 5.75 -26.65 -0.15 -1.77 16 16 C 0.09 1.32 2.68 -26.61 -0.07 1.25 16 17 O -0.37 -5.23 9.71 -35.23 -0.34 -5.57 16 18 C 0.08 0.95 3.31 -25.07 -0.08 0.86 16 19 C -0.15 -1.55 5.97 -24.55 -0.15 -1.70 16 20 C -0.12 -1.06 6.84 -24.88 -0.17 -1.23 16 21 C -0.12 -0.99 6.80 -25.62 -0.17 -1.17 16 22 C -0.12 -1.18 6.56 -25.61 -0.17 -1.35 16 23 C -0.14 -2.12 5.55 -26.65 -0.15 -2.27 16 24 C 0.06 1.01 4.53 -3.83 -0.02 1.00 16 25 H 0.04 0.62 6.84 -51.93 -0.35 0.27 16 26 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 27 H 0.05 0.83 6.45 -51.93 -0.34 0.49 16 28 H 0.02 0.39 5.34 -51.93 -0.28 0.11 16 29 H 0.01 0.30 7.57 -51.93 -0.39 -0.09 16 30 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 31 H 0.02 0.33 6.89 -51.93 -0.36 -0.03 16 32 H 0.08 1.17 8.01 -51.93 -0.42 0.75 16 33 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 35 H 0.05 0.65 7.39 -51.93 -0.38 0.26 16 36 H 0.06 0.65 7.42 -51.93 -0.39 0.26 16 37 H 0.07 0.71 7.14 -51.93 -0.37 0.34 16 38 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 39 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 40 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 41 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 42 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 43 H 0.08 0.81 8.07 -51.93 -0.42 0.39 16 44 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 45 H 0.08 1.52 8.14 -51.93 -0.42 1.09 16 46 H 0.06 0.83 6.58 -51.93 -0.34 0.49 16 47 H 0.02 0.35 6.57 -51.93 -0.34 0.01 16 48 H 0.09 1.66 6.17 -51.93 -0.32 1.34 16 LS Contribution 354.42 15.07 5.34 5.34 Total: -1.00 -30.67 354.42 -10.30 -40.96 By element: Atomic # 1 Polarization: 8.24 SS G_CDS: -8.92 Total: -0.69 kcal Atomic # 6 Polarization: -17.68 SS G_CDS: -1.51 Total: -19.19 kcal Atomic # 7 Polarization: -37.95 SS G_CDS: -0.20 Total: -38.15 kcal Atomic # 8 Polarization: -5.23 SS G_CDS: -0.34 Total: -5.57 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -4.67 Total: 17.29 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -30.67 -10.30 -40.96 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411208003.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.391 kcal (2) G-P(sol) polarization free energy of solvation -30.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.965 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds