Wall clock time and date at job start Tue Mar 31 2020 06:03:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09005 * 109.47163 * 2 1 4 4 C 1.53001 * 109.47273 * 119.99607 * 2 1 3 5 5 C 1.50698 * 109.47290 * 183.87465 * 4 2 1 6 6 H 1.08003 * 119.99955 * 0.02562 * 5 4 2 7 7 C 1.37875 * 119.99592 * 180.02562 * 5 4 2 8 8 N 1.31509 * 120.00418 * 359.97438 * 7 5 4 9 9 Si 1.86808 * 119.99603 * 179.97438 * 7 5 4 10 10 H 1.48492 * 109.47189 * 0.02562 * 9 7 5 11 11 H 1.48497 * 109.46780 * 120.00022 * 9 7 5 12 12 H 1.48500 * 109.47219 * 239.99725 * 9 7 5 13 13 N 1.46899 * 109.47488 * 239.99941 * 2 1 3 14 14 C 1.46850 * 111.00000 * 70.94800 * 13 2 1 15 15 C 1.53032 * 109.52269 * 174.16190 * 14 13 2 16 16 C 1.53109 * 109.28028 * 59.17975 * 15 14 13 17 17 O 1.42903 * 109.52472 * 182.44300 * 16 15 14 18 18 C 1.42905 * 113.99900 * 210.00055 * 17 16 15 19 19 C 1.54268 * 110.03030 * 267.90205 * 18 17 16 20 20 C 1.54961 * 104.16112 * 217.13809 * 19 18 17 21 21 C 1.54896 * 102.77741 * 37.88745 * 20 19 18 22 22 C 1.53875 * 110.03099 * 150.68793 * 18 17 16 23 23 C 1.53123 * 109.16066 * 302.34429 * 16 15 14 24 24 C 1.46843 * 111.00059 * 306.73763 * 13 2 1 25 25 H 1.09008 * 109.46917 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47912 * 299.99991 * 1 2 3 27 27 H 1.09008 * 109.47219 * 60.00482 * 1 2 3 28 28 H 1.08999 * 109.47202 * 303.88057 * 4 2 1 29 29 H 1.09005 * 109.46809 * 63.87632 * 4 2 1 30 30 H 0.97002 * 120.00127 * 179.97438 * 8 7 5 31 31 H 1.09000 * 109.46356 * 54.13845 * 14 13 2 32 32 H 1.09002 * 109.46148 * 294.17719 * 14 13 2 33 33 H 1.09004 * 109.50329 * 179.12063 * 15 14 13 34 34 H 1.09003 * 109.50492 * 299.19449 * 15 14 13 35 35 H 1.08997 * 109.53070 * 62.31170 * 16 15 14 36 36 H 1.08990 * 110.01912 * 29.29255 * 18 17 16 37 37 H 1.09004 * 110.48699 * 335.78532 * 19 18 17 38 38 H 1.08998 * 110.48591 * 98.42359 * 19 18 17 39 39 H 1.08998 * 110.71879 * 279.57571 * 20 19 18 40 40 H 1.08999 * 110.92358 * 156.29435 * 20 19 18 41 41 H 1.08999 * 110.48497 * 203.40697 * 21 20 19 42 42 H 1.08999 * 110.59507 * 80.81920 * 21 20 19 43 43 H 1.08996 * 110.03119 * 238.56549 * 22 18 17 44 44 H 1.08997 * 110.03578 * 359.94801 * 22 18 17 45 45 H 1.08997 * 109.50551 * 177.60243 * 23 16 15 46 46 H 1.09005 * 109.49952 * 297.71449 * 23 16 15 47 47 H 1.08997 * 109.46354 * 65.82110 * 24 13 2 48 48 H 1.09002 * 109.45964 * 305.85334 * 24 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5439 -0.6386 1.2982 6 1 4.0821 -0.1229 0.5167 7 6 4.2327 -1.2213 2.3408 8 7 3.5773 -1.8488 3.2927 9 14 6.0970 -1.1196 2.4011 10 1 6.5899 -0.3648 1.2211 11 1 6.5146 -0.4224 3.6439 12 1 6.6683 -2.4902 2.3866 13 7 2.0197 -0.6925 -1.1994 14 6 1.7732 0.1071 -2.4062 15 6 2.4230 -0.5743 -3.6126 16 6 1.8339 -1.9778 -3.7785 17 8 2.4776 -2.6401 -4.8690 18 6 1.6475 -3.5860 -5.5461 19 6 1.8333 -4.9881 -4.9300 20 6 1.7569 -5.9486 -6.1437 21 6 2.4949 -5.1585 -7.2529 22 6 2.0676 -3.6943 -7.0224 23 6 2.0613 -2.7738 -2.4904 24 6 1.4221 -2.0287 -1.3165 25 1 -0.3633 -1.0278 -0.0005 26 1 -0.3635 0.5138 0.8899 27 1 -0.3634 0.5138 -0.8901 28 1 1.6210 -0.2490 2.1379 29 1 1.7345 -1.7670 1.2153 30 1 4.0619 -2.2592 4.0260 31 1 2.2007 1.1014 -2.2767 32 1 0.6993 0.1925 -2.5722 33 1 2.2266 0.0113 -4.5108 34 1 3.4989 -0.6470 -3.4537 35 1 0.7649 -1.9030 -3.9776 36 1 0.6029 -3.2830 -5.4763 37 1 2.8056 -5.0652 -4.4433 38 1 1.0331 -5.2026 -4.2217 39 1 0.7201 -6.1326 -6.4252 40 1 2.2700 -6.8864 -5.9308 41 1 2.1773 -5.4980 -8.2387 42 1 3.5745 -5.2626 -7.1441 43 1 1.2266 -3.4446 -7.6692 44 1 2.9040 -3.0246 -7.2227 45 1 1.6066 -3.7597 -2.5867 46 1 3.1315 -2.8817 -2.3135 47 1 0.3498 -1.9332 -1.4875 48 1 1.5946 -2.5856 -0.3955 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000411208004.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:36 Heat of formation + Delta-G solvation = -68.138616 kcal Electronic energy + Delta-G solvation = -23345.809644 eV Core-core repulsion = 20206.446728 eV Total energy + Delta-G solvation = -3139.362916 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.60507 -38.35692 -36.14811 -33.75376 -32.16556 -30.55563 -29.25042 -28.80619 -27.52846 -27.25270 -23.74365 -23.02080 -22.44928 -20.87834 -20.49385 -19.85879 -18.63782 -17.04591 -16.13962 -15.99704 -15.44789 -14.93581 -14.53876 -14.41374 -14.17157 -13.95919 -13.49389 -13.36325 -13.17526 -12.66870 -12.44171 -12.03778 -12.01110 -11.77147 -11.67127 -11.43517 -11.30911 -11.20019 -11.17616 -10.89791 -10.80835 -10.78296 -10.64090 -10.52137 -10.35099 -10.31560 -10.13049 -9.86035 -9.27383 -9.11055 -8.91099 -8.22957 -7.43283 -5.85877 -3.83182 3.40794 3.48301 3.54454 3.70161 4.43593 4.45332 4.54909 4.60532 4.76165 5.04068 5.11198 5.14451 5.29269 5.32342 5.36353 5.47564 5.48876 5.51554 5.57034 5.65138 5.69207 5.71208 5.79472 5.80138 5.84694 5.89002 5.95166 5.99948 6.05191 6.06747 6.09410 6.16717 6.18895 6.28315 6.40215 6.49917 6.59132 6.68158 6.76116 7.01273 7.44551 7.57130 7.71456 7.95182 8.05626 8.15875 8.61814 9.23256 9.78618 11.26209 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.018430 B = 0.004114 C = 0.003740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1518.892714 B = 6803.805155 C = 7484.688538 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.086 3.914 3 H 0.069 0.931 4 C 0.030 3.970 5 C -0.487 4.487 6 H 0.061 0.939 7 C 0.050 3.950 8 N -0.905 5.905 9 Si 0.888 3.112 10 H -0.273 1.273 11 H -0.288 1.288 12 H -0.287 1.287 13 N -0.509 5.509 14 C 0.057 3.943 15 C -0.110 4.110 16 C 0.093 3.907 17 O -0.374 6.374 18 C 0.085 3.915 19 C -0.148 4.148 20 C -0.124 4.124 21 C -0.123 4.123 22 C -0.124 4.124 23 C -0.135 4.135 24 C 0.059 3.941 25 H 0.052 0.948 26 H 0.055 0.945 27 H 0.038 0.962 28 H 0.018 0.982 29 H 0.018 0.982 30 H 0.256 0.744 31 H 0.074 0.926 32 H 0.023 0.977 33 H 0.062 0.938 34 H 0.080 0.920 35 H 0.050 0.950 36 H 0.058 0.942 37 H 0.080 0.920 38 H 0.066 0.934 39 H 0.065 0.935 40 H 0.067 0.933 41 H 0.064 0.936 42 H 0.068 0.932 43 H 0.067 0.933 44 H 0.077 0.923 45 H 0.060 0.940 46 H 0.081 0.919 47 H 0.022 0.978 48 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.925 -3.670 -19.105 20.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.021 4.021 3 H 0.087 0.913 4 C -0.007 4.007 5 C -0.526 4.526 6 H 0.080 0.920 7 C -0.149 4.149 8 N -0.546 5.546 9 Si 0.717 3.283 10 H -0.197 1.197 11 H -0.215 1.215 12 H -0.214 1.214 13 N -0.233 5.233 14 C -0.072 4.072 15 C -0.148 4.148 16 C 0.035 3.965 17 O -0.293 6.293 18 C 0.027 3.973 19 C -0.185 4.185 20 C -0.162 4.162 21 C -0.160 4.160 22 C -0.162 4.162 23 C -0.173 4.173 24 C -0.069 4.069 25 H 0.071 0.929 26 H 0.074 0.926 27 H 0.057 0.943 28 H 0.036 0.964 29 H 0.036 0.964 30 H 0.066 0.934 31 H 0.092 0.908 32 H 0.041 0.959 33 H 0.081 0.919 34 H 0.099 0.901 35 H 0.068 0.932 36 H 0.076 0.924 37 H 0.099 0.901 38 H 0.085 0.915 39 H 0.083 0.917 40 H 0.086 0.914 41 H 0.083 0.917 42 H 0.086 0.914 43 H 0.086 0.914 44 H 0.096 0.904 45 H 0.078 0.922 46 H 0.099 0.901 47 H 0.040 0.960 48 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -6.188 -3.767 -18.956 20.293 hybrid contribution -0.166 -0.016 0.196 0.258 sum -6.354 -3.783 -18.759 20.164 Atomic orbital electron populations 1.22525 0.99853 1.01278 1.00602 1.21917 0.89970 0.98337 0.91907 0.91254 1.19199 0.96441 0.95277 0.89784 1.21215 0.91623 1.33136 1.06599 0.92039 1.24999 0.97977 0.95958 0.95976 1.69973 1.35033 1.37500 1.12104 0.86589 0.86554 0.77539 0.77635 1.19747 1.21458 1.21351 1.62042 1.58325 1.01745 1.01184 1.22030 0.97221 0.97417 0.90515 1.21633 1.02335 0.93617 0.97249 1.22267 0.95126 0.92676 0.86392 1.87973 1.39734 1.55565 1.46007 1.22811 0.93632 0.88945 0.91890 1.22987 1.03036 0.94728 0.97796 1.22453 1.00345 0.98155 0.95249 1.22326 1.00579 0.94624 0.98493 1.22230 1.01901 0.97480 0.94546 1.22133 1.03311 0.97912 0.93940 1.22031 0.94619 0.91210 0.99011 0.92887 0.92550 0.94259 0.96399 0.96356 0.93436 0.90755 0.95889 0.91889 0.90142 0.93180 0.92351 0.90149 0.91548 0.91657 0.91424 0.91748 0.91364 0.91383 0.90394 0.92173 0.90071 0.96026 0.89192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.15 8.44 37.15 0.31 -2.83 16 2 C 0.09 1.76 2.26 -67.72 -0.15 1.60 16 3 H 0.07 1.43 7.97 -51.93 -0.41 1.02 16 4 C 0.03 0.76 4.37 -27.88 -0.12 0.64 16 5 C -0.49 -13.70 8.81 -34.44 -0.30 -14.00 16 6 H 0.06 1.74 7.74 -52.48 -0.41 1.33 16 7 C 0.05 1.45 5.46 -17.82 -0.10 1.35 16 8 N -0.90 -27.39 13.29 55.43 0.74 -26.66 16 9 Si 0.89 22.29 29.54 -169.99 -5.02 17.27 16 10 H -0.27 -6.76 7.11 56.52 0.40 -6.36 16 11 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 12 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 13 N -0.51 -9.65 4.28 -226.70 -0.97 -10.62 16 14 C 0.06 0.89 5.15 -3.83 -0.02 0.87 16 15 C -0.11 -1.60 5.75 -26.66 -0.15 -1.75 16 16 C 0.09 1.31 2.68 -26.61 -0.07 1.24 16 17 O -0.37 -5.24 9.56 -35.23 -0.34 -5.57 16 18 C 0.09 0.96 3.38 -25.61 -0.09 0.87 16 19 C -0.15 -1.57 5.47 -25.03 -0.14 -1.71 16 20 C -0.12 -1.08 6.91 -24.70 -0.17 -1.25 16 21 C -0.12 -1.04 6.83 -25.07 -0.17 -1.21 16 22 C -0.12 -1.18 6.61 -25.61 -0.17 -1.35 16 23 C -0.13 -2.12 5.52 -26.65 -0.15 -2.27 16 24 C 0.06 1.05 4.52 -3.84 -0.02 1.03 16 25 H 0.05 0.90 6.45 -51.92 -0.34 0.57 16 26 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 27 H 0.04 0.59 6.85 -51.92 -0.36 0.24 16 28 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.02 0.49 6.30 -51.93 -0.33 0.16 16 30 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 31 H 0.07 1.14 8.00 -51.93 -0.42 0.72 16 32 H 0.02 0.34 6.91 -51.93 -0.36 -0.02 16 33 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 35 H 0.05 0.66 7.38 -51.93 -0.38 0.28 16 36 H 0.06 0.62 7.39 -51.93 -0.38 0.24 16 37 H 0.08 0.97 8.08 -51.93 -0.42 0.55 16 38 H 0.07 0.68 7.81 -51.93 -0.41 0.28 16 39 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 40 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 42 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 43 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 44 H 0.08 0.81 7.95 -51.93 -0.41 0.39 16 45 H 0.06 0.85 6.89 -51.93 -0.36 0.50 16 46 H 0.08 1.46 8.14 -51.93 -0.42 1.03 16 47 H 0.02 0.36 6.57 -51.93 -0.34 0.01 16 48 H 0.09 1.84 6.18 -51.93 -0.32 1.52 16 LS Contribution 358.34 15.07 5.40 5.40 Total: -1.00 -29.92 358.34 -10.70 -40.62 By element: Atomic # 1 Polarization: 7.35 SS G_CDS: -9.00 Total: -1.65 kcal Atomic # 6 Polarization: -17.28 SS G_CDS: -1.51 Total: -18.78 kcal Atomic # 7 Polarization: -37.05 SS G_CDS: -0.23 Total: -37.28 kcal Atomic # 8 Polarization: -5.24 SS G_CDS: -0.34 Total: -5.57 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -5.02 Total: 17.27 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -29.92 -10.70 -40.62 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411208004.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.521 kcal (2) G-P(sol) polarization free energy of solvation -29.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.618 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds