Wall clock time and date at job start Tue Mar 31 2020 06:04:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 109.46953 * 2 1 4 4 C 1.52995 * 109.47268 * 120.00494 * 2 1 3 5 5 C 1.50695 * 109.47170 * 185.00178 * 4 2 1 6 6 H 1.07998 * 120.00046 * 359.97438 * 5 4 2 7 7 C 1.37882 * 120.00299 * 179.97438 * 5 4 2 8 8 N 1.31509 * 119.99722 * 359.97438 * 7 5 4 9 9 Si 1.86801 * 120.00185 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.47025 * 359.97438 * 9 7 5 11 11 H 1.48497 * 109.46845 * 120.00176 * 9 7 5 12 12 H 1.48495 * 109.46896 * 240.00191 * 9 7 5 13 13 N 1.46905 * 109.46804 * 240.00596 * 2 1 3 14 14 C 1.46994 * 111.00059 * 306.04111 * 13 2 1 15 15 C 1.53114 * 109.30986 * 182.31611 * 14 13 2 16 16 O 1.43055 * 109.16857 * 303.01039 * 15 14 13 17 17 C 1.43070 * 113.61107 * 58.98952 * 16 15 14 18 18 C 1.47047 * 111.05568 * 69.76370 * 13 2 1 19 19 C 1.50444 * 110.73308 * 178.73453 * 17 16 15 20 20 C 1.54077 * 112.37439 * 335.22185 * 19 17 16 21 21 C 1.54080 * 112.79298 * 318.35679 * 20 19 17 22 22 C 1.50494 * 112.55524 * 318.25395 * 21 20 19 23 23 C 1.54269 * 108.60222 * 94.12428 * 22 21 20 24 24 C 1.45541 * 112.35013 * 280.18699 * 23 22 21 25 25 H 1.08995 * 109.47184 * 299.99396 * 1 2 3 26 26 H 1.09003 * 109.47281 * 59.99714 * 1 2 3 27 27 H 1.09005 * 109.46839 * 179.97438 * 1 2 3 28 28 H 1.09005 * 109.46663 * 304.99937 * 4 2 1 29 29 H 1.09005 * 109.47272 * 64.99894 * 4 2 1 30 30 H 0.97001 * 120.00057 * 179.97438 * 8 7 5 31 31 H 1.09002 * 109.50355 * 62.35522 * 14 13 2 32 32 H 1.09003 * 109.50265 * 302.27571 * 14 13 2 33 33 H 1.08999 * 109.52259 * 62.91087 * 15 14 13 34 34 H 1.08991 * 109.52279 * 183.10195 * 15 14 13 35 35 H 1.09007 * 109.48893 * 57.84419 * 18 13 2 36 36 H 1.08996 * 109.51705 * 297.77641 * 18 13 2 37 37 H 1.09002 * 108.89674 * 95.96818 * 19 17 16 38 38 H 1.08997 * 108.89906 * 214.47661 * 19 17 16 39 39 H 1.08999 * 108.81770 * 197.50700 * 20 19 17 40 40 H 1.08995 * 108.81630 * 79.21070 * 20 19 17 41 41 H 1.09001 * 108.86594 * 197.45625 * 21 20 19 42 42 H 1.09002 * 108.86122 * 79.03899 * 21 20 19 43 43 H 1.08999 * 109.61286 * 334.38907 * 22 21 20 44 44 H 1.08998 * 109.61166 * 213.86255 * 22 21 20 45 45 H 1.08998 * 108.90456 * 159.44375 * 23 22 21 46 46 H 1.09002 * 108.82445 * 40.87339 * 23 22 21 47 47 H 1.09000 * 108.90121 * 301.12842 * 24 23 22 48 48 H 1.09009 * 108.89860 * 182.62257 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 1.2491 5 6 3.5419 -0.6149 1.3126 6 1 4.0790 -0.0861 0.5391 7 6 4.2304 -1.1927 2.3582 8 7 3.5764 -1.8363 3.3003 9 14 6.0922 -1.0615 2.4365 10 1 6.5839 -0.2929 1.2648 11 1 6.4871 -0.3650 3.6871 12 1 6.6855 -2.4226 2.4193 13 7 2.0196 -0.6924 -1.1996 14 6 1.4340 -2.0363 -1.3081 15 6 2.0130 -2.7433 -2.5366 16 8 1.7592 -1.9488 -3.6989 17 6 2.3218 -0.6352 -3.6291 18 6 1.7482 0.0947 -2.4117 19 6 2.0433 0.1313 -4.8933 20 6 1.8086 -0.7956 -6.1015 21 6 2.7875 -1.9848 -6.1405 22 6 4.1947 -1.5861 -5.7857 23 6 4.4095 -1.8290 -4.2775 24 6 3.8489 -0.7634 -3.4599 25 1 -0.3633 0.5137 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.6054 -0.2618 2.1369 29 1 1.7517 -1.7716 1.2054 30 1 4.0608 -2.2431 4.0357 31 1 0.3520 -1.9544 -1.4116 32 1 1.6715 -2.6101 -0.4123 33 1 3.0881 -2.8708 -2.4104 34 1 1.5406 -3.7187 -2.6519 35 1 2.2165 1.0748 -2.3212 36 1 0.6719 0.2156 -2.5338 37 1 1.1571 0.7482 -4.7442 38 1 2.8920 0.7812 -5.1064 39 1 1.9236 -0.2155 -7.0172 40 1 0.7898 -1.1802 -6.0570 41 1 2.7843 -2.4113 -7.1436 42 1 2.4480 -2.7439 -5.4357 43 1 4.3436 -0.5301 -6.0111 44 1 4.9007 -2.1881 -6.3576 45 1 5.4791 -1.9002 -4.0801 46 1 3.9364 -2.7716 -4.0021 47 1 4.3158 0.1804 -3.7413 48 1 4.0722 -0.9673 -2.4126 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000411348801.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:07 Heat of formation + Delta-G solvation = -51.838013 kcal Electronic energy + Delta-G solvation = -24768.267141 eV Core-core repulsion = 21629.611072 eV Total energy + Delta-G solvation = -3138.656069 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.58666 -37.50456 -35.48760 -32.92331 -32.55814 -32.09649 -30.58754 -28.42266 -27.27181 -25.33279 -24.46420 -23.42488 -23.04532 -21.45941 -19.92467 -18.97894 -18.62330 -16.24268 -16.04223 -15.50338 -15.31056 -15.09387 -14.66258 -14.47110 -14.30711 -13.99546 -13.33465 -13.15210 -12.86396 -12.81319 -12.62762 -12.13153 -12.10306 -11.76136 -11.63221 -11.52492 -11.21439 -11.10577 -10.94746 -10.65272 -10.59806 -10.45922 -10.43419 -10.31121 -10.28343 -10.01457 -9.95305 -9.70209 -9.28941 -8.98536 -8.84172 -8.28023 -7.47944 -5.90648 -3.88406 3.36230 3.44123 3.49063 4.04738 4.44300 4.54877 4.85540 4.88719 4.96514 5.21218 5.27975 5.30160 5.45852 5.48452 5.50260 5.53259 5.60932 5.67376 5.72772 5.77425 5.89112 5.91728 5.93853 5.97399 5.99205 6.04041 6.13244 6.23888 6.28322 6.29181 6.35638 6.41723 6.43933 6.49539 6.55439 6.57411 6.68493 6.76955 6.81674 6.96835 7.50107 7.56807 7.64798 7.87049 7.98718 8.10461 8.56263 9.17728 9.73461 11.21334 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.019682 B = 0.005754 C = 0.004945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1422.255376 B = 4865.416866 C = 5660.906569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.087 3.913 3 H 0.069 0.931 4 C 0.031 3.969 5 C -0.488 4.488 6 H 0.060 0.940 7 C 0.051 3.949 8 N -0.903 5.903 9 Si 0.887 3.113 10 H -0.273 1.273 11 H -0.288 1.288 12 H -0.287 1.287 13 N -0.504 5.504 14 C 0.020 3.980 15 C 0.056 3.944 16 O -0.369 6.369 17 C 0.131 3.869 18 C 0.031 3.969 19 C -0.104 4.104 20 C -0.097 4.097 21 C -0.120 4.120 22 C -0.114 4.114 23 C -0.115 4.115 24 C -0.144 4.144 25 H 0.055 0.945 26 H 0.039 0.961 27 H 0.053 0.947 28 H 0.018 0.982 29 H 0.019 0.981 30 H 0.257 0.743 31 H 0.032 0.968 32 H 0.094 0.906 33 H 0.065 0.935 34 H 0.087 0.913 35 H 0.075 0.925 36 H 0.032 0.968 37 H 0.060 0.940 38 H 0.070 0.930 39 H 0.048 0.952 40 H 0.058 0.942 41 H 0.043 0.957 42 H 0.084 0.916 43 H 0.057 0.943 44 H 0.053 0.947 45 H 0.052 0.948 46 H 0.067 0.933 47 H 0.058 0.942 48 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.513 1.113 -16.962 17.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.021 4.021 3 H 0.087 0.913 4 C -0.006 4.006 5 C -0.527 4.527 6 H 0.078 0.922 7 C -0.148 4.148 8 N -0.544 5.544 9 Si 0.716 3.284 10 H -0.198 1.198 11 H -0.214 1.214 12 H -0.213 1.213 13 N -0.227 5.227 14 C -0.109 4.109 15 C -0.020 4.020 16 O -0.289 6.289 17 C 0.092 3.908 18 C -0.098 4.098 19 C -0.142 4.142 20 C -0.135 4.135 21 C -0.157 4.157 22 C -0.152 4.152 23 C -0.152 4.152 24 C -0.182 4.182 25 H 0.074 0.926 26 H 0.058 0.942 27 H 0.072 0.928 28 H 0.036 0.964 29 H 0.037 0.963 30 H 0.066 0.934 31 H 0.050 0.950 32 H 0.113 0.887 33 H 0.083 0.917 34 H 0.105 0.895 35 H 0.094 0.906 36 H 0.050 0.950 37 H 0.079 0.921 38 H 0.089 0.911 39 H 0.067 0.933 40 H 0.077 0.923 41 H 0.062 0.938 42 H 0.102 0.898 43 H 0.076 0.924 44 H 0.072 0.928 45 H 0.071 0.929 46 H 0.086 0.914 47 H 0.076 0.924 48 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -3.066 0.907 -16.913 17.212 hybrid contribution 0.263 0.257 0.445 0.578 sum -2.802 1.165 -16.467 16.745 Atomic orbital electron populations 1.22511 0.99760 1.01353 1.00612 1.21934 0.90082 0.98318 0.91776 0.91283 1.19190 0.96396 0.95307 0.89755 1.21187 0.91739 1.32877 1.06891 0.92154 1.24998 0.97929 0.95910 0.95998 1.69969 1.35097 1.37018 1.12344 0.86606 0.86545 0.77567 0.77690 1.19792 1.21406 1.21333 1.62298 1.57839 1.01575 1.01012 1.22753 0.96393 0.92090 0.99618 1.22737 1.00924 0.93593 0.84794 1.88000 1.77232 1.24636 1.38985 1.21108 0.92672 0.83480 0.93556 1.22733 0.98163 0.97722 0.91190 1.21331 1.01742 0.97558 0.93529 1.21573 0.99642 0.96201 0.96094 1.21419 0.94606 0.98938 1.00742 1.21326 0.96688 1.00901 0.96256 1.20485 1.00103 1.00121 0.94512 1.21054 0.94914 0.99296 1.02903 0.92559 0.94211 0.92813 0.96379 0.96325 0.93380 0.94951 0.88736 0.91730 0.89526 0.90632 0.94953 0.92113 0.91135 0.93335 0.92344 0.93801 0.89787 0.92410 0.92818 0.92919 0.91450 0.92378 0.88947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.17 8.44 37.16 0.31 -2.86 16 2 C 0.09 1.74 2.26 -67.71 -0.15 1.58 16 3 H 0.07 1.42 8.05 -51.93 -0.42 1.00 16 4 C 0.03 0.76 4.37 -27.89 -0.12 0.64 16 5 C -0.49 -13.39 8.84 -34.44 -0.30 -13.70 16 6 H 0.06 1.66 7.74 -52.49 -0.41 1.25 16 7 C 0.05 1.45 5.46 -17.82 -0.10 1.35 16 8 N -0.90 -26.92 13.29 55.43 0.74 -26.18 16 9 Si 0.89 21.83 29.54 -169.99 -5.02 16.81 16 10 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 11 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 12 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 13 N -0.50 -9.26 3.39 -226.30 -0.77 -10.03 16 14 C 0.02 0.34 4.80 -3.71 -0.02 0.32 16 15 C 0.06 0.85 6.03 37.22 0.22 1.07 16 16 O -0.37 -5.40 6.32 -35.23 -0.22 -5.62 16 17 C 0.13 1.84 0.74 -91.23 -0.07 1.78 16 18 C 0.03 0.48 3.93 -3.69 -0.01 0.47 16 19 C -0.10 -1.24 4.89 -27.44 -0.13 -1.37 16 20 C -0.10 -1.08 5.41 -25.60 -0.14 -1.22 16 21 C -0.12 -1.36 5.28 -27.42 -0.14 -1.51 16 22 C -0.11 -1.30 5.60 -27.32 -0.15 -1.45 16 23 C -0.11 -1.51 5.02 -29.58 -0.15 -1.65 16 24 C -0.14 -2.09 3.67 -29.63 -0.11 -2.20 16 25 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 26 H 0.04 0.62 6.73 -51.93 -0.35 0.27 16 27 H 0.05 0.93 6.38 -51.93 -0.33 0.60 16 28 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.02 0.49 6.29 -51.93 -0.33 0.16 16 30 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 31 H 0.03 0.55 6.36 -51.93 -0.33 0.22 16 32 H 0.09 1.86 6.28 -51.93 -0.33 1.54 16 33 H 0.06 1.03 5.51 -51.93 -0.29 0.74 16 34 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 35 H 0.08 1.17 8.09 -51.93 -0.42 0.75 16 36 H 0.03 0.51 6.69 -51.93 -0.35 0.16 16 37 H 0.06 0.69 7.74 -51.93 -0.40 0.29 16 38 H 0.07 0.79 6.64 -51.93 -0.34 0.44 16 39 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 40 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.08 1.08 5.31 -51.93 -0.28 0.81 16 43 H 0.06 0.64 6.99 -51.93 -0.36 0.28 16 44 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 45 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 46 H 0.07 0.92 4.91 -51.93 -0.26 0.67 16 47 H 0.06 0.80 7.46 -51.93 -0.39 0.41 16 48 H 0.09 1.63 6.57 -51.92 -0.34 1.29 16 LS Contribution 335.79 15.07 5.06 5.06 Total: -1.00 -28.63 335.79 -9.71 -38.34 By element: Atomic # 1 Polarization: 8.80 SS G_CDS: -8.43 Total: 0.37 kcal Atomic # 6 Polarization: -17.68 SS G_CDS: -1.07 Total: -18.75 kcal Atomic # 7 Polarization: -36.18 SS G_CDS: -0.03 Total: -36.21 kcal Atomic # 8 Polarization: -5.40 SS G_CDS: -0.22 Total: -5.62 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -28.63 -9.71 -38.34 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411348801.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.499 kcal (2) G-P(sol) polarization free energy of solvation -28.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.339 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds