Wall clock time and date at job start Tue Mar 31 2020 06:04:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08998 * 109.46807 * 2 1 4 4 C 1.53003 * 109.47175 * 240.00478 * 2 1 3 5 5 C 1.50698 * 109.47463 * 63.60576 * 4 2 1 6 6 H 1.08006 * 119.99677 * 5.12832 * 5 4 2 7 7 C 1.37868 * 120.00156 * 185.13072 * 5 4 2 8 8 N 1.31512 * 120.00385 * 0.02562 * 7 5 4 9 9 Si 1.86802 * 120.00137 * 179.97438 * 7 5 4 10 10 H 1.48505 * 109.46799 * 60.00012 * 9 7 5 11 11 H 1.48504 * 109.47306 * 179.97438 * 9 7 5 12 12 H 1.48499 * 109.47420 * 300.00140 * 9 7 5 13 13 N 1.46894 * 109.47194 * 120.00112 * 2 1 3 14 14 C 1.47045 * 110.99895 * 190.61193 * 13 2 1 15 15 C 1.53118 * 109.18533 * 177.46251 * 14 13 2 16 16 O 1.43004 * 109.22070 * 57.02602 * 15 14 13 17 17 C 1.43032 * 113.79049 * 301.31340 * 16 15 14 18 18 C 1.47011 * 110.99886 * 67.01010 * 13 2 1 19 19 C 1.50467 * 110.78696 * 296.12448 * 17 16 15 20 20 C 1.54072 * 112.43640 * 335.03806 * 19 17 16 21 21 C 1.54080 * 112.80490 * 318.31088 * 20 19 17 22 22 C 1.50479 * 112.53059 * 318.27001 * 21 20 19 23 23 C 1.54267 * 108.55739 * 94.13951 * 22 21 20 24 24 C 1.45518 * 112.37077 * 280.10135 * 23 22 21 25 25 H 1.08991 * 109.46878 * 299.99634 * 1 2 3 26 26 H 1.08994 * 109.47217 * 60.00137 * 1 2 3 27 27 H 1.08998 * 109.46807 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.46953 * 183.60824 * 4 2 1 29 29 H 1.09000 * 109.46515 * 303.60734 * 4 2 1 30 30 H 0.97003 * 120.00385 * 180.02562 * 8 7 5 31 31 H 1.09002 * 109.51531 * 297.37170 * 14 13 2 32 32 H 1.08998 * 109.51581 * 57.54603 * 14 13 2 33 33 H 1.08998 * 109.51212 * 176.95143 * 15 14 13 34 34 H 1.09006 * 109.51478 * 297.04941 * 15 14 13 35 35 H 1.08989 * 109.49838 * 302.31089 * 18 13 2 36 36 H 1.09001 * 109.49872 * 62.41780 * 18 13 2 37 37 H 1.09004 * 108.88995 * 95.79332 * 19 17 16 38 38 H 1.08993 * 108.89110 * 214.27518 * 19 17 16 39 39 H 1.09002 * 108.80958 * 197.45185 * 20 19 17 40 40 H 1.08997 * 108.81691 * 79.16997 * 20 19 17 41 41 H 1.09000 * 108.87312 * 197.48271 * 21 20 19 42 42 H 1.09003 * 108.87532 * 79.05596 * 21 20 19 43 43 H 1.09008 * 109.61566 * 334.41974 * 22 21 20 44 44 H 1.08996 * 109.62783 * 213.86530 * 22 21 20 45 45 H 1.08992 * 108.90121 * 159.34930 * 23 22 21 46 46 H 1.08995 * 108.82547 * 40.78847 * 23 22 21 47 47 H 1.09002 * 108.89349 * 301.15624 * 24 23 22 48 48 H 1.09002 * 108.89093 * 182.67237 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2493 5 6 1.6121 0.0390 -2.4781 6 1 1.1064 0.9880 -2.3772 7 6 1.8660 -0.4769 -3.7312 8 7 2.4813 -1.6327 -3.8542 9 14 1.3348 0.4650 -5.2544 10 1 1.9992 1.7930 -5.2718 11 1 1.7222 -0.2977 -6.4682 12 1 -0.1386 0.6489 -5.2340 13 7 2.0197 -0.6925 1.1994 14 6 3.4675 -0.4971 1.3665 15 6 3.9217 -1.1809 2.6590 16 8 3.5664 -2.5652 2.6092 17 6 2.1645 -2.7955 2.4441 18 6 1.6899 -2.1244 1.1525 19 6 1.3951 -2.2778 3.6290 20 6 2.2534 -2.2186 4.9071 21 6 3.1560 -3.4555 5.0782 22 6 2.4498 -4.7375 4.7286 23 6 2.7508 -5.0775 3.2543 24 6 1.9250 -4.3148 2.3302 25 1 -0.3633 0.5137 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 3.1281 -0.7775 -1.2175 29 1 1.6249 -1.7284 -1.2822 30 1 2.6603 -1.9956 -4.7358 31 1 3.9943 -0.9347 0.5185 32 1 3.6870 0.5692 1.4219 33 1 5.0027 -1.0858 2.7607 34 1 3.4329 -0.7092 3.5116 35 1 0.6113 -2.2462 1.0542 36 1 2.1879 -2.5847 0.2991 37 1 1.0301 -1.2760 3.4024 38 1 0.5407 -2.9306 3.8076 39 1 1.5928 -2.1431 5.7709 40 1 2.8808 -1.3281 4.8683 41 1 3.4894 -3.5080 6.1146 42 1 4.0288 -3.3469 4.4343 43 1 1.3754 -4.6119 4.8634 44 1 2.8105 -5.5410 5.3706 45 1 2.5715 -6.1405 3.0934 46 1 3.7996 -4.8620 3.0507 47 1 0.8758 -4.5234 2.5399 48 1 2.1493 -4.6323 1.3119 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000411348802.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:13 Heat of formation + Delta-G solvation = -54.487089 kcal Electronic energy + Delta-G solvation = -24572.255886 eV Core-core repulsion = 21433.484945 eV Total energy + Delta-G solvation = -3138.770942 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.56705 -37.48036 -35.60693 -32.94962 -32.72434 -31.90102 -30.91471 -28.22355 -26.96310 -25.58826 -24.52188 -23.50459 -23.14050 -21.27327 -19.95714 -19.21467 -18.46231 -16.76378 -15.97766 -15.46862 -15.35981 -15.00228 -14.70881 -14.42441 -14.08055 -13.79845 -13.46874 -13.23804 -13.06558 -12.84986 -12.54004 -12.23187 -11.98741 -11.82315 -11.76134 -11.22877 -11.10567 -11.00888 -10.89051 -10.80101 -10.68533 -10.53876 -10.43864 -10.37840 -10.25649 -10.05165 -9.87875 -9.72689 -9.52928 -9.10631 -8.93568 -8.36793 -7.49992 -6.02262 -4.04740 3.30800 3.35699 3.37714 4.04873 4.38815 4.47955 4.82079 4.85344 4.97751 5.21374 5.24313 5.28197 5.33100 5.41648 5.45936 5.53348 5.57400 5.61633 5.71682 5.87582 5.89180 5.95347 6.03711 6.07858 6.14929 6.16343 6.25878 6.31013 6.33031 6.34412 6.38487 6.39215 6.46109 6.49404 6.55862 6.56444 6.71261 6.79808 6.92388 7.01884 7.48217 7.54290 7.60208 7.68008 7.83665 7.98284 8.40899 9.01228 9.58986 11.08739 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.029725 B = 0.004451 C = 0.004287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 941.750007 B = 6288.958236 C = 6529.391082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.079 3.921 3 H 0.067 0.933 4 C -0.001 4.001 5 C -0.516 4.516 6 H 0.056 0.944 7 C 0.058 3.942 8 N -0.895 5.895 9 Si 0.890 3.110 10 H -0.277 1.277 11 H -0.288 1.288 12 H -0.277 1.277 13 N -0.532 5.532 14 C 0.016 3.984 15 C 0.057 3.943 16 O -0.366 6.366 17 C 0.131 3.869 18 C 0.030 3.970 19 C -0.135 4.135 20 C -0.108 4.108 21 C -0.122 4.122 22 C -0.113 4.113 23 C -0.112 4.112 24 C -0.106 4.106 25 H 0.038 0.962 26 H 0.065 0.935 27 H 0.044 0.956 28 H 0.011 0.989 29 H 0.023 0.977 30 H 0.261 0.739 31 H 0.048 0.952 32 H 0.075 0.925 33 H 0.086 0.914 34 H 0.061 0.939 35 H 0.079 0.921 36 H 0.054 0.946 37 H 0.078 0.922 38 H 0.061 0.939 39 H 0.048 0.952 40 H 0.061 0.939 41 H 0.043 0.957 42 H 0.084 0.916 43 H 0.058 0.942 44 H 0.054 0.946 45 H 0.051 0.949 46 H 0.071 0.929 47 H 0.066 0.934 48 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.033 -3.502 17.048 17.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.028 4.028 3 H 0.085 0.915 4 C -0.039 4.039 5 C -0.554 4.554 6 H 0.074 0.926 7 C -0.143 4.143 8 N -0.534 5.534 9 Si 0.718 3.282 10 H -0.203 1.203 11 H -0.213 1.213 12 H -0.202 1.202 13 N -0.256 5.256 14 C -0.112 4.112 15 C -0.019 4.019 16 O -0.285 6.285 17 C 0.091 3.909 18 C -0.099 4.099 19 C -0.173 4.173 20 C -0.145 4.145 21 C -0.159 4.159 22 C -0.150 4.150 23 C -0.149 4.149 24 C -0.143 4.143 25 H 0.057 0.943 26 H 0.084 0.916 27 H 0.063 0.937 28 H 0.029 0.971 29 H 0.042 0.958 30 H 0.070 0.930 31 H 0.067 0.933 32 H 0.093 0.907 33 H 0.104 0.896 34 H 0.079 0.921 35 H 0.097 0.903 36 H 0.073 0.927 37 H 0.097 0.903 38 H 0.080 0.920 39 H 0.067 0.933 40 H 0.079 0.921 41 H 0.062 0.938 42 H 0.102 0.898 43 H 0.077 0.923 44 H 0.073 0.927 45 H 0.070 0.930 46 H 0.089 0.911 47 H 0.085 0.915 48 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -0.078 -3.568 17.340 17.703 hybrid contribution -0.042 0.382 -1.844 1.884 sum -0.120 -3.185 15.496 15.820 Atomic orbital electron populations 1.21673 0.95269 1.00946 1.00429 1.21849 0.95092 0.97412 0.88441 0.91476 1.19659 0.96022 0.96422 0.91770 1.21110 1.37816 1.05722 0.90790 0.92621 1.25005 0.95233 0.94956 0.99103 1.69954 1.41727 1.18218 1.23504 0.86692 0.79086 0.79950 0.82481 1.20278 1.21331 1.20217 1.62592 1.12608 1.10260 1.40116 1.22709 0.89891 1.00760 0.97865 1.22777 0.99524 0.82647 0.96986 1.87980 1.23224 1.23812 1.93523 1.21185 0.81612 0.94404 0.93650 1.22749 1.01453 0.89246 0.96414 1.21819 0.98498 1.02838 0.94142 1.21841 0.97918 0.98295 0.96485 1.21443 1.00204 0.93960 1.00340 1.21293 1.00431 0.97180 0.96118 1.20334 1.01537 0.98618 0.94426 1.20528 1.00202 0.93051 1.00555 0.94312 0.91602 0.93673 0.97121 0.95843 0.92980 0.93340 0.90652 0.89574 0.92085 0.90279 0.92739 0.90294 0.92047 0.93302 0.92085 0.93820 0.89791 0.92305 0.92722 0.92983 0.91055 0.91511 0.91582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.38 8.94 37.16 0.33 -2.05 16 2 C 0.08 1.62 2.35 -67.71 -0.16 1.46 16 3 H 0.07 1.40 8.03 -51.93 -0.42 0.98 16 4 C 0.00 -0.02 3.62 -27.88 -0.10 -0.12 16 5 C -0.52 -14.25 8.29 -34.44 -0.29 -14.53 16 6 H 0.06 1.49 7.16 -52.48 -0.38 1.12 16 7 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 8 N -0.89 -26.78 13.29 55.43 0.74 -26.05 16 9 Si 0.89 21.55 29.54 -169.99 -5.02 16.52 16 10 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 11 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 12 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 13 N -0.53 -9.41 3.98 -226.30 -0.90 -10.31 16 14 C 0.02 0.27 5.40 -3.68 -0.02 0.25 16 15 C 0.06 0.80 6.39 37.22 0.24 1.04 16 16 O -0.37 -5.46 6.14 -35.23 -0.22 -5.68 16 17 C 0.13 1.88 0.62 -91.19 -0.06 1.82 16 18 C 0.03 0.52 3.30 -3.71 -0.01 0.50 16 19 C -0.14 -1.73 4.20 -27.44 -0.12 -1.85 16 20 C -0.11 -1.23 5.18 -25.61 -0.13 -1.36 16 21 C -0.12 -1.35 5.28 -27.43 -0.14 -1.50 16 22 C -0.11 -1.20 5.61 -27.33 -0.15 -1.35 16 23 C -0.11 -1.32 5.18 -29.59 -0.15 -1.47 16 24 C -0.11 -1.39 4.53 -29.62 -0.13 -1.52 16 25 H 0.04 0.65 8.14 -51.93 -0.42 0.22 16 26 H 0.07 1.32 6.96 -51.93 -0.36 0.96 16 27 H 0.04 0.85 6.54 -51.93 -0.34 0.51 16 28 H 0.01 0.29 6.63 -51.93 -0.34 -0.05 16 29 H 0.02 0.64 6.60 -51.93 -0.34 0.30 16 30 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 31 H 0.05 0.95 6.69 -51.93 -0.35 0.60 16 32 H 0.08 1.18 8.08 -51.93 -0.42 0.76 16 33 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 34 H 0.06 0.80 5.02 -51.93 -0.26 0.54 16 35 H 0.08 1.36 6.41 -51.94 -0.33 1.03 16 36 H 0.05 1.12 6.29 -51.93 -0.33 0.80 16 37 H 0.08 1.12 7.23 -51.93 -0.38 0.74 16 38 H 0.06 0.74 6.64 -51.93 -0.34 0.39 16 39 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.06 0.71 5.58 -51.93 -0.29 0.42 16 41 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.08 1.05 5.33 -51.93 -0.28 0.77 16 43 H 0.06 0.62 6.98 -51.92 -0.36 0.26 16 44 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 45 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 46 H 0.07 0.93 6.71 -51.93 -0.35 0.58 16 47 H 0.07 0.80 7.47 -51.93 -0.39 0.41 16 48 H 0.07 0.95 7.83 -51.93 -0.41 0.54 16 LS Contribution 333.92 15.07 5.03 5.03 Total: -1.00 -28.87 333.92 -9.69 -38.56 By element: Atomic # 1 Polarization: 9.36 SS G_CDS: -8.33 Total: 1.03 kcal Atomic # 6 Polarization: -18.12 SS G_CDS: -1.00 Total: -19.12 kcal Atomic # 7 Polarization: -36.19 SS G_CDS: -0.16 Total: -36.35 kcal Atomic # 8 Polarization: -5.46 SS G_CDS: -0.22 Total: -5.68 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -28.87 -9.69 -38.56 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411348802.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.928 kcal (2) G-P(sol) polarization free energy of solvation -28.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.559 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds