Wall clock time and date at job start Tue Mar 31 2020 05:31:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09002 * 109.47297 * 2 1 4 4 C 1.52996 * 109.47068 * 240.00204 * 2 1 3 5 5 C 1.53004 * 109.47096 * 180.02562 * 4 2 1 6 6 C 1.52997 * 109.47385 * 59.99300 * 5 4 2 7 7 H 1.08998 * 109.47133 * 179.97438 * 6 5 4 8 8 O 1.42903 * 109.46758 * 60.00606 * 6 5 4 9 9 C 1.52996 * 109.47576 * 300.00406 * 6 5 4 10 10 H 1.09004 * 109.47053 * 300.00110 * 9 6 5 11 11 C 1.52990 * 109.47308 * 180.02562 * 9 6 5 12 12 H 1.09007 * 109.46391 * 173.93742 * 11 9 6 13 13 C 1.53042 * 109.46272 * 293.91608 * 11 9 6 14 14 C 1.53121 * 109.28065 * 179.19773 * 13 11 9 15 15 C 1.53119 * 109.15769 * 302.34159 * 14 13 11 16 16 C 1.53045 * 109.27681 * 57.65804 * 15 14 13 17 17 N 1.46843 * 109.46444 * 53.96645 * 11 9 6 18 18 C 1.46895 * 111.00040 * 54.14919 * 17 11 9 19 19 C 1.50700 * 109.47564 * 64.37716 * 18 17 11 20 20 H 1.07999 * 119.99755 * 356.48317 * 19 18 17 21 21 C 1.37879 * 120.00354 * 176.48073 * 19 18 17 22 22 N 1.31510 * 119.99581 * 0.02562 * 21 19 18 23 23 Si 1.86792 * 120.00059 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.47175 * 90.00149 * 23 21 19 25 25 H 1.48500 * 109.47487 * 210.00246 * 23 21 19 26 26 H 1.48504 * 109.47457 * 330.00260 * 23 21 19 27 27 C 1.52997 * 109.47223 * 119.99620 * 2 1 3 28 28 H 1.09004 * 109.47091 * 300.00087 * 1 2 3 29 29 H 1.09002 * 109.47480 * 59.99964 * 1 2 3 30 30 H 1.09002 * 109.47404 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47053 * 299.99522 * 4 2 1 32 32 H 1.08995 * 109.47430 * 59.99822 * 4 2 1 33 33 H 1.09004 * 109.46604 * 299.99582 * 5 4 2 34 34 H 1.09001 * 109.46716 * 180.02562 * 5 4 2 35 35 H 0.96696 * 114.00506 * 59.99598 * 8 6 5 36 36 H 1.09003 * 109.50188 * 299.13601 * 13 11 9 37 37 H 1.09000 * 109.50302 * 59.21289 * 13 11 9 38 38 H 1.08996 * 109.52215 * 62.24843 * 14 13 11 39 39 H 1.08997 * 109.52286 * 182.44015 * 14 13 11 40 40 H 1.09003 * 109.50048 * 177.59086 * 15 14 13 41 41 H 1.08993 * 109.50687 * 297.67770 * 15 14 13 42 42 H 1.08994 * 109.46399 * 60.83532 * 16 15 14 43 43 H 1.09002 * 109.46089 * 180.80160 * 16 15 14 44 44 H 1.09005 * 109.47405 * 184.38161 * 18 17 11 45 45 H 1.09007 * 109.47050 * 304.37782 * 18 17 11 46 46 H 0.97009 * 119.99854 * 179.97438 * 22 21 19 47 47 H 1.09001 * 109.47773 * 299.99930 * 27 2 1 48 48 H 1.09004 * 109.47019 * 60.00404 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2492 5 6 3.5700 -0.7218 -1.2489 6 6 4.0795 -1.4432 0.0003 7 1 5.1695 -1.4440 0.0003 8 8 3.6028 -2.7904 0.0000 9 6 3.5695 -0.7221 1.2496 10 1 3.9332 0.3056 1.2498 11 6 4.0796 -1.4432 2.4987 12 1 3.8075 -0.8704 3.3854 13 6 3.4484 -2.8352 2.5774 14 6 3.9770 -3.5606 3.8180 15 6 5.5044 -3.6368 3.7428 16 6 6.0760 -2.2216 3.6304 17 7 5.5408 -1.5703 2.4280 18 6 6.1732 -0.2621 2.2123 19 6 5.9125 0.6244 3.4028 20 1 5.2876 0.2735 4.2107 21 6 6.4717 1.8833 3.4606 22 7 7.2323 2.3107 2.4766 23 14 6.1479 2.9823 4.9359 24 1 7.1881 2.7439 5.9686 25 1 6.1883 4.4049 4.5119 26 1 4.8099 2.6718 5.5004 27 6 2.0400 -0.7211 1.2493 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 1.6766 -1.7489 -1.2492 32 1 1.6766 -0.2074 -2.1392 33 1 3.9336 0.3058 -1.2487 34 1 3.9332 -1.2352 -2.1392 35 1 3.8880 -3.3085 -0.7650 36 1 2.3647 -2.7400 2.6457 37 1 3.7083 -3.4036 1.6844 38 1 3.6832 -3.0126 4.7132 39 1 3.5633 -4.5684 3.8545 40 1 5.8897 -4.1144 4.6438 41 1 5.7972 -4.2186 2.8689 42 1 5.7945 -1.6452 4.5116 43 1 7.1627 -2.2732 3.5624 44 1 7.2478 -0.3943 2.0862 45 1 5.7564 0.1998 1.3172 46 1 7.6255 3.1966 2.5170 47 1 1.6767 -0.2073 2.1393 48 1 1.6767 -1.7489 1.2493 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000411658256.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:57 Heat of formation + Delta-G solvation = -74.605950 kcal Electronic energy + Delta-G solvation = -24883.463975 eV Core-core repulsion = 21743.820614 eV Total energy + Delta-G solvation = -3139.643361 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.83165 -37.46483 -35.19407 -33.58482 -32.30202 -31.59041 -30.80469 -28.12277 -26.58217 -25.80219 -23.76779 -23.09890 -21.46796 -21.21945 -19.93508 -19.41937 -18.34556 -16.45656 -16.14003 -15.33324 -14.95692 -14.82628 -14.30835 -14.09227 -13.83179 -13.35192 -13.18937 -13.02407 -12.87915 -12.71785 -12.40927 -12.09185 -11.83361 -11.69004 -11.53493 -11.18586 -11.12624 -11.02247 -10.89380 -10.60758 -10.53346 -10.35579 -10.30167 -10.11497 -10.00463 -9.94842 -9.71776 -9.45379 -9.32175 -9.11816 -8.80782 -8.38484 -7.01837 -5.99571 -4.08392 3.27493 3.34624 3.37834 4.42319 4.68526 4.98168 5.05609 5.10966 5.21962 5.30195 5.46233 5.47903 5.55347 5.58253 5.65560 5.78316 5.83458 5.91665 5.93188 5.99751 6.05579 6.06204 6.11295 6.23854 6.29733 6.31164 6.35867 6.43622 6.45729 6.54705 6.58415 6.64477 6.69613 6.71357 6.79521 6.81832 6.89102 6.97974 7.11729 7.36568 7.42441 7.57585 7.93780 8.15963 8.19783 8.36785 8.46345 9.03414 9.58285 11.04273 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.013658 B = 0.007282 C = 0.005792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2049.603428 B = 3844.365538 C = 4832.858488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.093 4.093 3 H 0.065 0.935 4 C -0.104 4.104 5 C -0.155 4.155 6 C 0.121 3.879 7 H 0.070 0.930 8 O -0.548 6.548 9 C -0.068 4.068 10 H 0.090 0.910 11 C 0.107 3.893 12 H 0.034 0.966 13 C -0.124 4.124 14 C -0.119 4.119 15 C -0.114 4.114 16 C 0.067 3.933 17 N -0.532 5.532 18 C 0.182 3.818 19 C -0.543 4.543 20 H 0.055 0.945 21 C 0.065 3.935 22 N -0.891 5.891 23 Si 0.884 3.116 24 H -0.281 1.281 25 H -0.286 1.286 26 H -0.275 1.275 27 C -0.105 4.105 28 H 0.051 0.949 29 H 0.048 0.952 30 H 0.051 0.949 31 H 0.064 0.936 32 H 0.050 0.950 33 H 0.068 0.932 34 H 0.056 0.944 35 H 0.357 0.643 36 H 0.048 0.952 37 H 0.108 0.892 38 H 0.046 0.954 39 H 0.048 0.952 40 H 0.049 0.951 41 H 0.061 0.939 42 H 0.034 0.966 43 H 0.060 0.940 44 H 0.028 0.972 45 H 0.033 0.967 46 H 0.261 0.739 47 H 0.053 0.947 48 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.319 -8.761 -5.648 13.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.111 4.111 3 H 0.084 0.916 4 C -0.141 4.141 5 C -0.193 4.193 6 C 0.063 3.937 7 H 0.088 0.912 8 O -0.353 6.353 9 C -0.087 4.087 10 H 0.108 0.892 11 C -0.002 4.002 12 H 0.052 0.948 13 C -0.161 4.161 14 C -0.157 4.157 15 C -0.152 4.152 16 C -0.062 4.062 17 N -0.256 5.256 18 C 0.056 3.944 19 C -0.583 4.583 20 H 0.073 0.927 21 C -0.137 4.137 22 N -0.530 5.530 23 Si 0.712 3.288 24 H -0.207 1.207 25 H -0.212 1.212 26 H -0.200 1.200 27 C -0.142 4.142 28 H 0.070 0.930 29 H 0.067 0.933 30 H 0.070 0.930 31 H 0.083 0.917 32 H 0.068 0.932 33 H 0.087 0.913 34 H 0.075 0.925 35 H 0.203 0.797 36 H 0.066 0.934 37 H 0.126 0.874 38 H 0.065 0.935 39 H 0.066 0.934 40 H 0.068 0.932 41 H 0.080 0.920 42 H 0.052 0.948 43 H 0.079 0.921 44 H 0.046 0.954 45 H 0.051 0.949 46 H 0.071 0.929 47 H 0.072 0.928 48 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -9.369 -8.694 -5.548 13.933 hybrid contribution 0.039 1.366 1.135 1.777 sum -9.330 -7.328 -4.413 12.657 Atomic orbital electron populations 1.21805 0.95924 1.01336 1.01040 1.21129 0.94745 0.99666 0.95601 0.91605 1.21443 0.95307 1.00591 0.96781 1.22308 0.96389 1.01889 0.98723 1.21707 0.97832 0.80988 0.93164 0.91229 1.86582 1.77816 1.23723 1.47221 1.21181 0.94261 0.99778 0.93462 0.89219 1.21228 0.89042 0.94299 0.95584 0.94809 1.22114 0.97947 0.96991 0.99092 1.21584 0.96092 0.99243 0.98777 1.21596 0.95415 0.97819 1.00384 1.21796 0.98533 0.92853 0.93003 1.62426 1.03541 1.24160 1.35519 1.19816 0.94766 0.83605 0.96176 1.21763 1.30486 1.00211 1.05803 0.92706 1.24933 0.95006 0.97901 0.95861 1.69939 1.32705 1.18873 1.31520 0.86721 0.78648 0.80078 0.83355 1.20717 1.21205 1.20024 1.21604 0.95613 1.00682 0.96342 0.92995 0.93299 0.92957 0.91715 0.93165 0.91289 0.92533 0.79747 0.93375 0.87448 0.93479 0.93369 0.93245 0.92021 0.94800 0.92129 0.95369 0.94880 0.92945 0.92836 0.91056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.68 9.19 37.16 0.34 -1.34 16 2 C -0.09 -1.27 2.72 -90.63 -0.25 -1.52 16 3 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 4 C -0.10 -1.31 5.06 -26.73 -0.14 -1.45 16 5 C -0.16 -2.13 5.64 -26.73 -0.15 -2.28 16 6 C 0.12 1.91 2.79 -26.73 -0.07 1.83 16 7 H 0.07 1.26 6.69 -51.93 -0.35 0.92 16 8 O -0.55 -7.61 8.24 -35.23 -0.29 -7.90 16 9 C -0.07 -1.22 1.44 -90.65 -0.13 -1.35 16 10 H 0.09 1.90 6.60 -51.93 -0.34 1.56 16 11 C 0.11 2.08 1.38 -67.73 -0.09 1.98 16 12 H 0.03 0.76 6.86 -51.92 -0.36 0.40 16 13 C -0.12 -2.08 4.29 -26.65 -0.11 -2.20 16 14 C -0.12 -1.91 6.00 -26.61 -0.16 -2.07 16 15 C -0.11 -1.89 6.09 -26.65 -0.16 -2.05 16 16 C 0.07 1.34 5.04 -3.83 -0.02 1.32 16 17 N -0.53 -11.17 3.82 -228.12 -0.87 -12.04 16 18 C 0.18 4.55 4.32 -4.98 -0.02 4.52 16 19 C -0.54 -14.75 7.72 -34.44 -0.27 -15.01 16 20 H 0.05 1.51 5.85 -52.49 -0.31 1.20 16 21 C 0.07 1.82 5.46 -17.82 -0.10 1.72 16 22 N -0.89 -25.89 13.29 55.43 0.74 -25.15 16 23 Si 0.88 21.53 29.54 -169.99 -5.02 16.51 16 24 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 25 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 26 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 27 C -0.10 -1.62 3.82 -26.76 -0.10 -1.72 16 28 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 29 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 30 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.06 0.81 7.68 -51.93 -0.40 0.41 16 32 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 34 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 35 H 0.36 3.67 9.08 46.49 0.42 4.09 16 36 H 0.05 0.78 6.39 -51.93 -0.33 0.44 16 37 H 0.11 1.81 4.91 -51.06 -0.25 1.56 16 38 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 39 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 42 H 0.03 0.75 6.73 -51.93 -0.35 0.40 16 43 H 0.06 1.24 8.12 -51.93 -0.42 0.82 16 44 H 0.03 0.78 8.14 -51.93 -0.42 0.35 16 45 H 0.03 0.86 5.52 -51.93 -0.29 0.57 16 46 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 47 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 48 H 0.07 1.09 5.90 -51.93 -0.31 0.79 16 LS Contribution 341.66 15.07 5.15 5.15 Total: -1.00 -28.23 341.66 -9.64 -37.87 By element: Atomic # 1 Polarization: 13.07 SS G_CDS: -7.91 Total: 5.16 kcal Atomic # 6 Polarization: -18.16 SS G_CDS: -1.43 Total: -19.59 kcal Atomic # 7 Polarization: -37.06 SS G_CDS: -0.13 Total: -37.19 kcal Atomic # 8 Polarization: -7.61 SS G_CDS: -0.29 Total: -7.90 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -28.23 -9.64 -37.87 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411658256.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.739 kcal (2) G-P(sol) polarization free energy of solvation -28.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.867 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds