Wall clock time and date at job start Tue Mar 31 2020 05:32:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08992 * 109.47388 * 2 1 4 4 C 1.53004 * 109.46923 * 239.99887 * 2 1 3 5 5 C 1.52995 * 109.47545 * 300.00540 * 4 2 1 6 6 C 1.53002 * 109.46988 * 300.00202 * 5 4 2 7 7 H 1.09001 * 109.47048 * 299.99777 * 6 5 4 8 8 O 1.42897 * 109.47161 * 180.02562 * 6 5 4 9 9 C 1.52999 * 109.47446 * 59.99682 * 6 5 4 10 10 H 1.09001 * 109.46920 * 60.00016 * 9 6 5 11 11 C 1.52994 * 109.47208 * 180.02562 * 9 6 5 12 12 H 1.08994 * 109.45535 * 174.79179 * 11 9 6 13 13 C 1.53039 * 109.46291 * 54.81685 * 11 9 6 14 14 C 1.53120 * 109.28121 * 180.79988 * 13 11 9 15 15 C 1.53121 * 109.15539 * 57.65802 * 14 13 11 16 16 C 1.53038 * 109.28140 * 302.34410 * 15 14 13 17 17 N 1.46847 * 109.51967 * 59.18116 * 16 15 14 18 18 C 1.46904 * 110.99866 * 174.16459 * 17 16 15 19 19 C 1.50698 * 109.46770 * 299.13706 * 18 17 16 20 20 H 1.08002 * 120.00508 * 0.02562 * 19 18 17 21 21 C 1.37883 * 119.99870 * 180.02562 * 19 18 17 22 22 N 1.31508 * 119.99880 * 359.97438 * 21 19 18 23 23 Si 1.86801 * 119.99712 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.46799 * 269.99615 * 23 21 19 25 25 H 1.48502 * 109.47116 * 150.00061 * 23 21 19 26 26 H 1.48498 * 109.47378 * 29.99770 * 23 21 19 27 27 C 1.52994 * 109.46952 * 300.00312 * 9 6 5 28 28 H 1.08998 * 109.47783 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.46982 * 300.00252 * 1 2 3 30 30 H 1.09010 * 109.46752 * 59.99448 * 1 2 3 31 31 H 1.08999 * 109.46743 * 179.97438 * 4 2 1 32 32 H 1.09003 * 109.46530 * 60.00732 * 4 2 1 33 33 H 1.08998 * 109.47266 * 179.97438 * 5 4 2 34 34 H 1.09001 * 109.47044 * 59.99982 * 5 4 2 35 35 H 0.96707 * 114.00381 * 59.99666 * 8 6 5 36 36 H 1.08991 * 109.50836 * 300.74907 * 13 11 9 37 37 H 1.09005 * 109.50233 * 60.82789 * 13 11 9 38 38 H 1.08997 * 109.52580 * 177.56036 * 14 13 11 39 39 H 1.08991 * 109.52618 * 297.75401 * 14 13 11 40 40 H 1.09001 * 109.50242 * 62.28657 * 15 14 13 41 41 H 1.09002 * 109.50277 * 182.36126 * 15 14 13 42 42 H 1.09000 * 109.46239 * 299.16559 * 16 15 14 43 43 H 1.08998 * 109.46232 * 179.19303 * 16 15 14 44 44 H 1.08994 * 109.46839 * 179.13923 * 18 17 16 45 45 H 1.08999 * 109.47172 * 59.13859 * 18 17 16 46 46 H 0.96999 * 119.99930 * 0.02562 * 22 21 19 47 47 H 1.08998 * 109.46931 * 179.97438 * 27 9 6 48 48 H 1.08999 * 109.47571 * 299.99652 * 27 9 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 1.5299 -2.1637 -1.2494 6 6 2.0398 -2.8851 -0.0001 7 1 3.1298 -2.8851 -0.0001 8 8 1.5639 -4.2324 -0.0005 9 6 1.5298 -2.1638 1.2491 10 1 0.4398 -2.1638 1.2491 11 6 2.0403 -2.8848 2.4983 12 1 1.7550 -2.3198 3.3856 13 6 3.5651 -2.9982 2.4343 14 6 4.0697 -3.7378 3.6765 15 6 3.4037 -5.1148 3.7464 16 6 1.8835 -4.9402 3.7724 17 7 1.4507 -4.2282 2.5632 18 6 -0.0149 -4.1641 2.4863 19 6 -0.5765 -5.5614 2.4303 20 1 0.0887 -6.4120 2.4503 21 6 -1.9397 -5.7539 2.3535 22 7 -2.7497 -4.7182 2.3296 23 14 -2.6358 -7.4860 2.2848 24 1 -2.7451 -7.9197 0.8688 25 1 -3.9812 -7.5041 2.9133 26 1 -1.7346 -8.4112 3.0177 27 6 2.0399 -0.7214 1.2492 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5140 -0.8900 31 1 3.1299 -0.7209 -1.2495 32 1 1.6766 -0.2073 -2.1392 33 1 1.8928 -2.6774 -2.1396 34 1 0.4399 -2.1636 -1.2494 35 1 1.8495 -4.7503 -0.7656 36 1 3.8518 -3.5512 1.5400 37 1 4.0031 -2.0005 2.4013 38 1 5.1511 -3.8589 3.6142 39 1 3.8172 -3.1653 4.5690 40 1 3.6878 -5.7012 2.8726 41 1 3.7269 -5.6298 4.6511 42 1 1.5990 -4.3655 4.6538 43 1 1.4061 -5.9194 3.8077 44 1 -0.3081 -3.6185 1.5894 45 1 -0.4029 -3.6515 3.3665 46 1 -2.3882 -3.8188 2.3656 47 1 1.6762 -0.2075 2.1389 48 1 3.1299 -0.7214 1.2492 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000411658258.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:00 Heat of formation + Delta-G solvation = -68.276680 kcal Electronic energy + Delta-G solvation = -24961.195381 eV Core-core repulsion = 21821.826477 eV Total energy + Delta-G solvation = -3139.368903 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.01874 -37.60919 -35.32763 -33.70448 -32.45004 -31.54667 -30.33670 -28.21270 -26.29092 -26.21302 -23.63479 -23.28912 -22.11690 -21.25361 -20.29818 -18.98694 -18.10334 -16.62784 -16.48847 -15.65882 -14.95415 -14.50807 -14.24935 -14.08520 -13.76609 -13.62719 -13.60214 -13.14012 -12.81537 -12.71712 -12.49778 -12.23171 -11.87619 -11.63607 -11.50249 -11.38329 -11.17499 -11.03846 -10.86578 -10.67121 -10.57704 -10.51375 -10.38431 -10.30880 -10.09442 -10.02325 -9.84223 -9.43261 -9.33207 -8.97453 -8.41780 -8.15937 -6.91794 -6.19044 -3.83700 3.51812 3.55599 3.71027 4.58681 4.65651 4.74158 4.86249 5.00368 5.16359 5.26579 5.31575 5.35134 5.42693 5.47619 5.50204 5.56456 5.64723 5.68303 5.72408 5.82151 5.83973 5.93693 6.01646 6.02944 6.09399 6.11437 6.14408 6.16458 6.25632 6.34097 6.35415 6.40258 6.42091 6.47114 6.53440 6.59260 6.67025 6.83681 6.86294 6.92866 7.27692 7.43831 8.09318 8.33292 8.47315 8.60966 8.81962 9.08794 9.84697 11.20158 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.014552 B = 0.007186 C = 0.005559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1923.627645 B = 3895.496442 C = 5036.009749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.090 4.090 3 H 0.065 0.935 4 C -0.109 4.109 5 C -0.158 4.158 6 C 0.121 3.879 7 H 0.042 0.958 8 O -0.510 6.510 9 C -0.079 4.079 10 H 0.089 0.911 11 C 0.094 3.906 12 H 0.019 0.981 13 C -0.110 4.110 14 C -0.118 4.118 15 C -0.115 4.115 16 C 0.063 3.937 17 N -0.496 5.496 18 C 0.192 3.808 19 C -0.569 4.569 20 H 0.054 0.946 21 C 0.010 3.990 22 N -0.922 5.922 23 Si 1.072 2.928 24 H -0.290 1.290 25 H -0.288 1.288 26 H -0.291 1.291 27 C -0.108 4.108 28 H 0.067 0.933 29 H 0.052 0.948 30 H 0.049 0.951 31 H 0.058 0.942 32 H 0.058 0.942 33 H 0.057 0.943 34 H 0.073 0.927 35 H 0.353 0.647 36 H 0.070 0.930 37 H 0.053 0.947 38 H 0.052 0.948 39 H 0.051 0.949 40 H 0.065 0.935 41 H 0.052 0.948 42 H 0.009 0.991 43 H 0.083 0.917 44 H 0.033 0.967 45 H -0.038 1.038 46 H 0.265 0.735 47 H 0.062 0.938 48 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.948 7.664 -4.369 15.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.109 4.109 3 H 0.083 0.917 4 C -0.147 4.147 5 C -0.196 4.196 6 C 0.061 3.939 7 H 0.060 0.940 8 O -0.310 6.310 9 C -0.097 4.097 10 H 0.107 0.893 11 C -0.015 4.015 12 H 0.037 0.963 13 C -0.148 4.148 14 C -0.155 4.155 15 C -0.153 4.153 16 C -0.065 4.065 17 N -0.220 5.220 18 C 0.066 3.934 19 C -0.608 4.608 20 H 0.072 0.928 21 C -0.193 4.193 22 N -0.560 5.560 23 Si 0.901 3.099 24 H -0.217 1.217 25 H -0.214 1.214 26 H -0.217 1.217 27 C -0.146 4.146 28 H 0.086 0.914 29 H 0.071 0.929 30 H 0.068 0.932 31 H 0.077 0.923 32 H 0.077 0.923 33 H 0.075 0.925 34 H 0.091 0.909 35 H 0.196 0.804 36 H 0.088 0.912 37 H 0.072 0.928 38 H 0.071 0.929 39 H 0.070 0.930 40 H 0.084 0.916 41 H 0.071 0.929 42 H 0.027 0.973 43 H 0.101 0.899 44 H 0.051 0.949 45 H -0.020 1.020 46 H 0.075 0.925 47 H 0.081 0.919 48 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 11.414 6.721 -4.283 13.921 hybrid contribution 1.380 1.294 0.249 1.908 sum 12.794 8.014 -4.034 15.627 Atomic orbital electron populations 1.21966 0.95115 1.02901 1.01104 1.21095 0.96208 0.98583 0.94996 0.91652 1.21487 1.00060 0.95671 0.97434 1.22414 1.02491 0.95861 0.98817 1.21541 0.95714 0.83720 0.92883 0.94028 1.87164 1.76199 1.20960 1.46707 1.21291 1.02158 0.92385 0.93886 0.89325 1.21456 0.93746 0.91296 0.95045 0.96314 1.21699 0.95594 0.99034 0.98487 1.21552 0.98849 0.97097 0.98026 1.21601 0.96419 0.96294 1.00950 1.21962 0.93460 1.00265 0.90833 1.61876 1.11126 1.13267 1.35730 1.19749 0.81791 0.97761 0.94081 1.21976 0.93556 0.92196 1.53050 0.92801 1.25722 0.93758 1.05220 0.94575 1.70747 1.37803 0.99252 1.48176 0.83501 0.75455 0.74393 0.76512 1.21687 1.21397 1.21690 1.21632 1.00362 0.95178 0.97439 0.91383 0.92896 0.93159 0.92347 0.92335 0.92472 0.90875 0.80395 0.91154 0.92836 0.92921 0.93048 0.91577 0.92927 0.97272 0.89857 0.94899 1.02006 0.92519 0.91928 0.91942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.04 8.50 37.16 0.32 -1.73 16 2 C -0.09 -1.09 3.20 -90.62 -0.29 -1.38 16 3 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 4 C -0.11 -1.26 5.45 -26.73 -0.15 -1.40 16 5 C -0.16 -2.15 5.27 -26.73 -0.14 -2.29 16 6 C 0.12 1.89 2.41 -26.73 -0.06 1.82 16 7 H 0.04 0.61 6.32 -51.93 -0.33 0.28 16 8 O -0.51 -9.56 10.48 -35.23 -0.37 -9.93 16 9 C -0.08 -1.32 1.23 -90.63 -0.11 -1.43 16 10 H 0.09 1.79 4.20 -51.93 -0.22 1.58 16 11 C 0.09 1.73 1.60 -67.72 -0.11 1.62 16 12 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 13 C -0.11 -1.69 4.64 -26.65 -0.12 -1.81 16 14 C -0.12 -1.73 6.00 -26.61 -0.16 -1.89 16 15 C -0.11 -1.90 6.09 -26.65 -0.16 -2.07 16 16 C 0.06 1.32 5.26 -3.83 -0.02 1.30 16 17 N -0.50 -10.85 2.93 -228.13 -0.67 -11.51 16 18 C 0.19 5.06 3.10 -4.97 -0.02 5.04 16 19 C -0.57 -16.45 8.41 -34.44 -0.29 -16.74 16 20 H 0.05 1.57 6.76 -52.49 -0.36 1.22 16 21 C 0.01 0.28 5.46 -17.82 -0.10 0.18 16 22 N -0.92 -28.78 13.65 55.43 0.76 -28.02 16 23 Si 1.07 26.24 29.90 -169.99 -5.08 21.16 16 24 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 25 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 26 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 27 C -0.11 -1.45 4.49 -26.73 -0.12 -1.57 16 28 H 0.07 1.07 4.81 -51.93 -0.25 0.82 16 29 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.05 0.59 8.14 -51.92 -0.42 0.17 16 31 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 34 H 0.07 1.14 6.43 -51.93 -0.33 0.80 16 35 H 0.35 5.25 9.08 45.56 0.41 5.66 16 36 H 0.07 1.11 6.30 -51.93 -0.33 0.78 16 37 H 0.05 0.71 6.61 -51.93 -0.34 0.37 16 38 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 40 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16 41 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 42 H 0.01 0.20 8.14 -51.93 -0.42 -0.23 16 43 H 0.08 1.92 6.35 -51.93 -0.33 1.59 16 44 H 0.03 0.92 5.22 -51.93 -0.27 0.65 16 45 H -0.04 -1.08 8.01 -51.93 -0.42 -1.50 16 46 H 0.26 8.29 7.22 -40.82 -0.29 7.99 16 47 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 48 H 0.06 0.77 6.59 -51.93 -0.34 0.42 16 LS Contribution 339.14 15.07 5.11 5.11 Total: -1.00 -31.72 339.14 -9.47 -41.19 By element: Atomic # 1 Polarization: 12.05 SS G_CDS: -7.69 Total: 4.36 kcal Atomic # 6 Polarization: -20.82 SS G_CDS: -1.53 Total: -22.35 kcal Atomic # 7 Polarization: -39.62 SS G_CDS: 0.09 Total: -39.54 kcal Atomic # 8 Polarization: -9.56 SS G_CDS: -0.37 Total: -9.93 kcal Atomic # 14 Polarization: 26.24 SS G_CDS: -5.08 Total: 21.16 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -31.72 -9.47 -41.19 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411658258.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.087 kcal (2) G-P(sol) polarization free energy of solvation -31.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.189 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds