Wall clock time and date at job start Tue Mar 31 2020 05:32:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09005 * 109.47121 * 2 1 4 4 C 1.52996 * 109.47609 * 239.99752 * 2 1 3 5 5 C 1.52998 * 109.46882 * 300.00197 * 4 2 1 6 6 C 1.53001 * 109.47303 * 299.99846 * 5 4 2 7 7 H 1.08997 * 109.47130 * 299.99693 * 6 5 4 8 8 O 1.42906 * 109.47091 * 180.02562 * 6 5 4 9 9 C 1.52994 * 109.47205 * 59.99910 * 6 5 4 10 10 H 1.09007 * 109.47219 * 59.99861 * 9 6 5 11 11 C 1.53001 * 109.47205 * 180.02562 * 9 6 5 12 12 H 1.08993 * 109.46489 * 297.57885 * 11 9 6 13 13 C 1.53040 * 109.46122 * 57.55080 * 11 9 6 14 14 C 1.53116 * 109.27953 * 179.19752 * 13 11 9 15 15 C 1.53120 * 109.15749 * 302.34292 * 14 13 11 16 16 C 1.53040 * 109.28070 * 57.65412 * 15 14 13 17 17 N 1.46846 * 109.46095 * 177.59788 * 11 9 6 18 18 C 1.46906 * 110.99902 * 54.15133 * 17 11 9 19 19 C 1.50699 * 109.47397 * 63.77753 * 18 17 11 20 20 H 1.08002 * 119.99898 * 354.80430 * 19 18 17 21 21 C 1.37873 * 120.00151 * 174.80215 * 19 18 17 22 22 N 1.31517 * 120.00188 * 185.20929 * 21 19 18 23 23 Si 1.86800 * 119.99984 * 5.21196 * 21 19 18 24 24 H 1.48502 * 109.47175 * 94.65922 * 23 21 19 25 25 H 1.48490 * 109.47035 * 214.65698 * 23 21 19 26 26 H 1.48501 * 109.47092 * 334.66194 * 23 21 19 27 27 C 1.52998 * 109.47064 * 300.00236 * 9 6 5 28 28 H 1.09002 * 109.47471 * 300.00058 * 1 2 3 29 29 H 1.09005 * 109.46922 * 60.00123 * 1 2 3 30 30 H 1.08996 * 109.47315 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47261 * 180.02562 * 4 2 1 32 32 H 1.09005 * 109.46877 * 60.00097 * 4 2 1 33 33 H 1.09006 * 109.47435 * 179.97438 * 5 4 2 34 34 H 1.09007 * 109.47309 * 59.99904 * 5 4 2 35 35 H 0.96705 * 113.99854 * 65.18705 * 8 6 5 36 36 H 1.09007 * 109.50065 * 299.13589 * 13 11 9 37 37 H 1.08998 * 109.50445 * 59.25226 * 13 11 9 38 38 H 1.08996 * 109.52658 * 182.44031 * 14 13 11 39 39 H 1.08992 * 109.52453 * 62.24747 * 14 13 11 40 40 H 1.09004 * 109.50407 * 297.71270 * 15 14 13 41 41 H 1.08999 * 109.50469 * 177.60057 * 15 14 13 42 42 H 1.08995 * 109.46275 * 180.80531 * 16 15 14 43 43 H 1.09000 * 109.45149 * 60.83309 * 16 15 14 44 44 H 1.08996 * 109.46998 * 183.77884 * 18 17 11 45 45 H 1.08998 * 109.46953 * 303.77623 * 18 17 11 46 46 H 0.96996 * 120.00141 * 180.02562 * 22 21 19 47 47 H 1.09009 * 109.47180 * 179.97438 * 27 9 6 48 48 H 1.08997 * 109.47290 * 299.99796 * 27 9 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 1.5300 -2.1637 -1.2491 6 6 2.0399 -2.8850 0.0002 7 1 3.1299 -2.8850 0.0003 8 8 1.5641 -4.2325 -0.0001 9 6 1.5299 -2.1637 1.2494 10 1 0.4399 -2.1636 1.2493 11 6 2.0404 -2.8845 2.4987 12 1 1.6423 -3.8990 2.5208 13 6 3.5695 -2.9375 2.4678 14 6 4.0766 -3.6418 3.7292 15 6 3.5625 -2.8947 4.9629 16 6 2.0335 -2.8429 4.9216 17 7 1.5987 -2.1594 3.6967 18 6 0.1421 -1.9684 3.6894 19 6 -0.5409 -3.3103 3.7521 20 1 0.0446 -4.2167 3.7086 21 6 -1.9132 -3.3807 3.8650 22 7 -2.5010 -4.5466 4.0229 23 14 -2.9376 -1.8203 3.7938 24 1 -3.4108 -1.6019 2.4033 25 1 -4.1068 -1.9541 4.6993 26 1 -2.1094 -0.6645 4.2221 27 6 2.0399 -0.7212 1.2493 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 3.1300 -0.7216 -1.2489 32 1 1.6767 -0.2074 -2.1392 33 1 1.8931 -2.6776 -2.1393 34 1 0.4400 -2.1638 -1.2492 35 1 1.9133 -4.7728 -0.7221 36 1 3.8968 -3.4893 1.5864 37 1 3.9682 -1.9237 2.4318 38 1 5.1666 -3.6435 3.7324 39 1 3.7099 -4.6681 3.7458 40 1 3.9610 -1.8801 4.9663 41 1 3.8847 -3.4157 5.8645 42 1 1.6649 -2.2991 5.7913 43 1 1.6355 -3.8575 4.9321 44 1 -0.1504 -1.3711 4.5529 45 1 -0.1522 -1.4533 2.7749 46 1 -3.4664 -4.5962 4.1019 47 1 1.6762 -0.2072 2.1391 48 1 3.1299 -0.7212 1.2494 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000411658262.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:05 Heat of formation + Delta-G solvation = -72.015702 kcal Electronic energy + Delta-G solvation = -25074.051133 eV Core-core repulsion = 21934.520094 eV Total energy + Delta-G solvation = -3139.531039 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.00703 -37.65288 -35.67182 -33.58524 -32.26201 -31.66305 -30.37519 -28.13421 -27.12000 -26.21457 -23.75910 -23.20543 -22.03441 -21.01464 -20.17692 -19.01755 -17.87587 -16.90906 -16.63236 -15.54845 -14.95146 -14.59192 -14.36310 -14.06572 -14.03246 -13.61274 -13.43375 -13.12190 -12.80718 -12.73402 -12.51437 -12.29093 -11.90002 -11.74237 -11.52239 -11.36885 -11.16671 -11.12702 -10.89015 -10.72208 -10.54551 -10.46949 -10.32034 -10.21355 -9.98241 -9.86663 -9.74143 -9.58934 -9.42867 -9.25524 -9.06080 -8.47293 -7.03218 -6.01573 -3.98803 3.30976 3.39110 3.42377 4.46226 4.52929 4.83236 4.90536 5.04079 5.20494 5.31736 5.33179 5.40606 5.43547 5.45905 5.51608 5.59959 5.67731 5.74583 5.83261 5.89972 5.95313 6.04323 6.09861 6.15146 6.17632 6.22213 6.28637 6.31782 6.40304 6.43430 6.45131 6.48391 6.59018 6.60993 6.66264 6.77307 6.80832 6.95332 7.01139 7.10682 7.16788 7.22220 7.68904 8.04245 8.21146 8.28532 8.55665 9.04468 9.62372 11.11863 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.012425 B = 0.008842 C = 0.006547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2253.017739 B = 3166.007125 C = 4275.591101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.095 4.095 3 H 0.064 0.936 4 C -0.109 4.109 5 C -0.153 4.153 6 C 0.110 3.890 7 H 0.049 0.951 8 O -0.554 6.554 9 C -0.071 4.071 10 H 0.092 0.908 11 C 0.103 3.897 12 H 0.057 0.943 13 C -0.113 4.113 14 C -0.118 4.118 15 C -0.115 4.115 16 C 0.063 3.937 17 N -0.528 5.528 18 C 0.151 3.849 19 C -0.540 4.540 20 H 0.074 0.926 21 C 0.072 3.928 22 N -0.899 5.899 23 Si 0.870 3.130 24 H -0.278 1.278 25 H -0.288 1.288 26 H -0.262 1.262 27 C -0.100 4.100 28 H 0.055 0.945 29 H 0.046 0.954 30 H 0.065 0.935 31 H 0.058 0.942 32 H 0.057 0.943 33 H 0.055 0.945 34 H 0.073 0.927 35 H 0.365 0.635 36 H 0.054 0.946 37 H 0.063 0.937 38 H 0.050 0.950 39 H 0.056 0.944 40 H 0.060 0.940 41 H 0.054 0.946 42 H 0.062 0.938 43 H 0.043 0.957 44 H 0.025 0.975 45 H 0.029 0.971 46 H 0.261 0.739 47 H 0.081 0.919 48 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.005 6.600 -8.404 16.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.113 4.113 3 H 0.083 0.917 4 C -0.146 4.146 5 C -0.191 4.191 6 C 0.051 3.949 7 H 0.067 0.933 8 O -0.357 6.357 9 C -0.089 4.089 10 H 0.110 0.890 11 C -0.006 4.006 12 H 0.075 0.925 13 C -0.151 4.151 14 C -0.155 4.155 15 C -0.153 4.153 16 C -0.065 4.065 17 N -0.252 5.252 18 C 0.024 3.976 19 C -0.579 4.579 20 H 0.092 0.908 21 C -0.130 4.130 22 N -0.538 5.538 23 Si 0.698 3.302 24 H -0.203 1.203 25 H -0.214 1.214 26 H -0.186 1.186 27 C -0.137 4.137 28 H 0.074 0.926 29 H 0.065 0.935 30 H 0.084 0.916 31 H 0.077 0.923 32 H 0.076 0.924 33 H 0.074 0.926 34 H 0.092 0.908 35 H 0.210 0.790 36 H 0.073 0.927 37 H 0.081 0.919 38 H 0.069 0.931 39 H 0.075 0.925 40 H 0.079 0.921 41 H 0.072 0.928 42 H 0.080 0.920 43 H 0.061 0.939 44 H 0.043 0.957 45 H 0.046 0.954 46 H 0.071 0.929 47 H 0.100 0.900 48 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 11.724 7.206 -7.837 15.837 hybrid contribution -0.901 -0.366 -0.591 1.138 sum 10.823 6.840 -8.428 15.328 Atomic orbital electron populations 1.21961 0.95356 1.02690 1.01033 1.21175 0.96077 0.98780 0.95299 0.91728 1.21489 1.00077 0.95218 0.97831 1.22302 1.02512 0.96218 0.98019 1.21896 0.96326 0.81898 0.94805 0.93267 1.86740 1.73139 1.22226 1.53603 1.21154 1.02429 0.93373 0.91963 0.88966 1.21274 0.92530 0.97116 0.89685 0.92478 1.21743 0.96589 1.00093 0.96665 1.21535 0.98914 0.99442 0.95645 1.21610 0.96861 0.99986 0.96859 1.21841 0.92905 0.98493 0.93284 1.62388 1.14730 1.47344 1.00731 1.20257 0.83910 0.96701 0.96710 1.21671 0.92458 0.93214 1.50569 0.90790 1.24942 0.97980 0.95599 0.94466 1.69943 1.09866 1.24009 1.49999 0.86933 0.80294 0.84798 0.78215 1.20343 1.21436 1.18629 1.21556 0.99851 0.94903 0.97405 0.92622 0.93523 0.91609 0.92317 0.92389 0.92583 0.90801 0.79003 0.92729 0.91864 0.93107 0.92530 0.92110 0.92758 0.91989 0.93905 0.95713 0.95358 0.92926 0.90007 0.92415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.21 8.50 37.15 0.32 -1.89 16 2 C -0.09 -1.24 3.19 -90.62 -0.29 -1.53 16 3 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 4 C -0.11 -1.26 5.45 -26.73 -0.15 -1.41 16 5 C -0.15 -1.97 5.30 -26.73 -0.14 -2.12 16 6 C 0.11 1.64 2.48 -26.73 -0.07 1.58 16 7 H 0.05 0.67 6.40 -51.93 -0.33 0.34 16 8 O -0.55 -9.19 12.68 -35.23 -0.45 -9.64 16 9 C -0.07 -1.23 0.95 -90.62 -0.09 -1.32 16 10 H 0.09 1.95 4.68 -51.93 -0.24 1.71 16 11 C 0.10 1.96 1.15 -67.72 -0.08 1.89 16 12 H 0.06 1.35 6.41 -51.93 -0.33 1.01 16 13 C -0.11 -1.78 4.65 -26.65 -0.12 -1.91 16 14 C -0.12 -1.79 6.00 -26.61 -0.16 -1.95 16 15 C -0.12 -1.83 6.09 -26.65 -0.16 -1.99 16 16 C 0.06 1.25 5.05 -3.83 -0.02 1.23 16 17 N -0.53 -10.83 3.88 -228.12 -0.88 -11.72 16 18 C 0.15 3.60 3.46 -4.97 -0.02 3.59 16 19 C -0.54 -15.16 8.26 -34.44 -0.28 -15.44 16 20 H 0.07 2.30 6.10 -52.49 -0.32 1.98 16 21 C 0.07 2.10 5.47 -17.82 -0.10 2.00 16 22 N -0.90 -27.90 13.96 55.43 0.77 -27.13 16 23 Si 0.87 21.67 27.59 -169.99 -4.69 16.98 16 24 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 25 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 26 H -0.26 -6.23 6.39 56.52 0.36 -5.87 16 27 C -0.10 -1.50 4.12 -26.73 -0.11 -1.61 16 28 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 29 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.07 1.08 4.81 -51.93 -0.25 0.83 16 31 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 34 H 0.07 1.08 6.43 -51.93 -0.33 0.74 16 35 H 0.36 4.20 9.12 45.56 0.42 4.61 16 36 H 0.05 0.80 6.43 -51.92 -0.33 0.47 16 37 H 0.06 0.95 6.45 -51.93 -0.34 0.62 16 38 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 40 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 41 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 42 H 0.06 1.23 8.12 -51.93 -0.42 0.80 16 43 H 0.04 0.97 6.79 -51.93 -0.35 0.62 16 44 H 0.02 0.61 7.06 -51.93 -0.37 0.25 16 45 H 0.03 0.68 5.25 -51.93 -0.27 0.40 16 46 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 47 H 0.08 1.38 7.07 -51.92 -0.37 1.01 16 48 H 0.06 0.81 6.47 -51.93 -0.34 0.47 16 LS Contribution 336.13 15.07 5.07 5.07 Total: -1.00 -30.91 336.13 -9.23 -40.14 By element: Atomic # 1 Polarization: 14.78 SS G_CDS: -7.59 Total: 7.19 kcal Atomic # 6 Polarization: -19.43 SS G_CDS: -1.47 Total: -20.89 kcal Atomic # 7 Polarization: -38.73 SS G_CDS: -0.11 Total: -38.84 kcal Atomic # 8 Polarization: -9.19 SS G_CDS: -0.45 Total: -9.64 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -4.69 Total: 16.98 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -30.91 -9.23 -40.14 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411658262.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.877 kcal (2) G-P(sol) polarization free energy of solvation -30.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.138 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds