Wall clock time and date at job start Tue Mar 31 2020 05:46:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42905 * 114.00149 * 2 1 4 4 C 1.53000 * 109.47442 * 83.02980 * 3 2 1 5 5 H 1.08993 * 109.47007 * 182.93446 * 4 3 2 6 6 C 1.52995 * 109.46999 * 302.93852 * 4 3 2 7 7 N 1.46904 * 109.46929 * 62.93712 * 4 3 2 8 8 C 1.46891 * 111.00008 * 155.00163 * 7 4 3 9 9 C 1.53005 * 109.47115 * 185.41962 * 8 7 4 10 10 C 1.50690 * 115.55137 * 58.54540 * 9 8 7 11 11 H 1.07995 * 120.00515 * 265.63118 * 10 9 8 12 12 C 1.37883 * 119.99999 * 85.63207 * 10 9 8 13 13 N 1.31517 * 119.99988 * 2.24608 * 12 10 9 14 14 Si 1.86796 * 120.00043 * 182.25291 * 12 10 9 15 15 H 1.48500 * 109.47621 * 89.99861 * 14 12 10 16 16 H 1.48499 * 109.47012 * 209.99684 * 14 12 10 17 17 H 1.48500 * 109.47281 * 329.99682 * 14 12 10 18 18 C 1.53006 * 117.49499 * 272.87557 * 9 8 7 19 19 C 1.53003 * 117.49470 * 204.21684 * 9 8 7 20 20 C 1.52998 * 109.47156 * 203.03300 * 3 2 1 21 21 C 1.53000 * 109.47206 * 59.99536 * 20 3 2 22 22 C 1.53004 * 109.46910 * 60.00112 * 21 20 3 23 23 C 1.52998 * 109.47095 * 299.99956 * 22 21 20 24 24 C 1.52998 * 109.46642 * 323.03116 * 3 2 1 25 25 H 1.08996 * 109.46779 * 184.36190 * 1 2 3 26 26 H 1.09001 * 109.47036 * 304.36317 * 1 2 3 27 27 H 1.09000 * 109.46644 * 64.35978 * 1 2 3 28 28 H 1.09000 * 109.47420 * 72.70785 * 6 4 3 29 29 H 1.08998 * 109.47020 * 192.70573 * 6 4 3 30 30 H 1.09004 * 109.47083 * 312.70248 * 6 4 3 31 31 H 1.00907 * 110.99523 * 278.95604 * 7 4 3 32 32 H 1.09002 * 109.47070 * 305.41550 * 8 7 4 33 33 H 1.09003 * 109.47422 * 65.41568 * 8 7 4 34 34 H 0.97000 * 120.00193 * 180.02562 * 13 12 10 35 35 H 1.08999 * 117.49876 * 0.02562 * 18 9 8 36 36 H 1.08996 * 117.49440 * 145.02249 * 18 9 8 37 37 H 1.09004 * 117.49430 * 214.97350 * 19 9 8 38 38 H 1.08991 * 117.50270 * 359.97438 * 19 9 8 39 39 H 1.08995 * 109.47289 * 179.97438 * 20 3 2 40 40 H 1.08996 * 109.47438 * 299.99848 * 20 3 2 41 41 H 1.08999 * 109.47519 * 179.97438 * 21 20 3 42 42 H 1.09005 * 109.47475 * 300.00043 * 21 20 3 43 43 H 1.09006 * 109.46816 * 179.97438 * 22 21 20 44 44 H 1.08995 * 109.47236 * 60.00214 * 22 21 20 45 45 H 1.09005 * 109.46938 * 299.99854 * 23 22 21 46 46 H 1.09001 * 109.47165 * 180.02562 * 23 22 21 47 47 H 1.08996 * 109.47544 * 60.00387 * 24 3 2 48 48 H 1.09004 * 109.47144 * 180.02562 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 2.0579 1.8427 1.4318 5 1 2.4529 2.8585 1.4258 6 6 0.6462 1.8479 2.0217 7 7 2.9266 0.9842 2.2482 8 6 3.4751 1.7257 3.3915 9 6 4.4766 0.8429 4.1388 10 6 5.6410 0.3456 3.3217 11 1 5.5936 -0.6239 2.8483 12 6 6.7669 1.1285 3.1783 13 7 6.8427 2.2899 3.7908 14 14 8.1846 0.5395 2.1141 15 1 7.9845 1.0080 0.7192 16 1 9.4603 1.0869 2.6418 17 1 8.2364 -0.9444 2.1353 18 6 3.9276 -0.0853 5.2243 19 6 4.7320 1.1574 5.6142 20 6 3.4304 1.2314 -0.5644 21 6 3.3829 0.6942 -1.9962 22 6 2.5374 1.6289 -2.8637 23 6 1.1173 1.7030 -2.2993 24 6 1.1648 2.2401 -0.8675 25 1 -0.3633 -1.0247 0.0782 26 1 -0.3633 0.5801 0.8483 27 1 -0.3632 0.4447 -0.9265 28 1 0.3387 0.8247 2.2375 29 1 0.6394 2.4311 2.9425 30 1 -0.0453 2.2917 1.3054 31 1 2.4338 0.1589 2.5552 32 1 3.9786 2.6240 3.0341 33 1 2.6652 2.0067 4.0647 34 1 7.6346 2.8408 3.6896 35 1 2.8530 -0.0672 5.4056 36 1 4.4090 -1.0554 5.3475 37 1 5.7422 1.0042 5.9939 38 1 4.1869 1.9934 6.0523 39 1 3.8736 2.2272 -0.5648 40 1 4.0328 0.5656 0.0536 41 1 4.3946 0.6419 -2.3985 42 1 2.9395 -0.3016 -1.9962 43 1 2.5039 1.2464 -3.8839 44 1 2.9807 2.6246 -2.8638 45 1 0.6739 0.7072 -2.2993 46 1 0.5148 2.3685 -2.9176 47 1 0.1531 2.2929 -0.4655 48 1 1.6084 3.2358 -0.8679 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000421856787.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:15 Heat of formation + Delta-G solvation = -22.617517 kcal Electronic energy + Delta-G solvation = -24366.745723 eV Core-core repulsion = 21229.356750 eV Total energy + Delta-G solvation = -3137.388973 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 1.43 seconds Orbital eigenvalues (eV) -40.19684 -36.94263 -35.58843 -34.65913 -31.74204 -31.01022 -30.36201 -28.70837 -26.33108 -25.46949 -24.29121 -22.51834 -22.20252 -20.98126 -20.12034 -19.54518 -18.86814 -16.44069 -15.93967 -15.37501 -15.26033 -14.79122 -14.58545 -14.22664 -13.92162 -13.46076 -13.37212 -13.22742 -12.96310 -12.51665 -12.22729 -12.18843 -11.91809 -11.86139 -11.66468 -11.46062 -11.29283 -11.05330 -10.82760 -10.81952 -10.60274 -10.54322 -10.37132 -10.25974 -10.08359 -10.05126 -9.61489 -9.38479 -8.86229 -8.79168 -8.24583 -7.94531 -7.33569 -5.85974 -3.87334 3.40708 3.46693 3.50808 4.10430 4.55252 4.68272 4.84112 4.91984 5.11221 5.21286 5.36148 5.39021 5.44042 5.47905 5.51441 5.53294 5.59627 5.67056 5.71516 5.74209 5.78547 5.83065 5.89299 6.00009 6.09967 6.13262 6.19171 6.25269 6.32101 6.34565 6.38837 6.45017 6.56321 6.61889 6.70384 6.72964 6.83272 6.98531 7.04677 7.22209 7.58904 7.62930 7.67347 8.05804 8.10838 8.32638 8.66336 9.11610 9.75288 11.23546 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.016640 B = 0.006237 C = 0.005004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1682.293541 B = 4488.546012 C = 5594.365337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.002 4.002 2 O -0.362 6.362 3 C 0.138 3.862 4 C 0.067 3.933 5 H 0.077 0.923 6 C -0.190 4.190 7 N -0.649 5.649 8 C 0.109 3.891 9 C 0.051 3.949 10 C -0.460 4.460 11 H 0.058 0.942 12 C 0.067 3.933 13 N -0.889 5.889 14 Si 0.886 3.114 15 H -0.281 1.281 16 H -0.291 1.291 17 H -0.276 1.276 18 C -0.218 4.218 19 C -0.154 4.154 20 C -0.099 4.099 21 C -0.118 4.118 22 C -0.118 4.118 23 C -0.117 4.117 24 C -0.150 4.150 25 H 0.073 0.927 26 H 0.058 0.942 27 H 0.041 0.959 28 H 0.064 0.936 29 H 0.051 0.949 30 H 0.056 0.944 31 H 0.335 0.665 32 H 0.069 0.931 33 H -0.009 1.009 34 H 0.255 0.745 35 H 0.057 0.943 36 H 0.075 0.925 37 H 0.083 0.917 38 H 0.057 0.943 39 H 0.065 0.935 40 H 0.098 0.902 41 H 0.056 0.944 42 H 0.066 0.934 43 H 0.054 0.946 44 H 0.057 0.943 45 H 0.068 0.932 46 H 0.055 0.945 47 H 0.066 0.934 48 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.086 0.352 -9.291 16.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 O -0.281 6.281 3 C 0.098 3.902 4 C -0.044 4.044 5 H 0.095 0.905 6 C -0.249 4.249 7 N -0.278 5.278 8 C -0.020 4.020 9 C 0.050 3.950 10 C -0.498 4.498 11 H 0.077 0.923 12 C -0.134 4.134 13 N -0.528 5.528 14 Si 0.715 3.285 15 H -0.207 1.207 16 H -0.217 1.217 17 H -0.201 1.201 18 C -0.255 4.255 19 C -0.192 4.192 20 C -0.136 4.136 21 C -0.156 4.156 22 C -0.156 4.156 23 C -0.155 4.155 24 C -0.188 4.188 25 H 0.091 0.909 26 H 0.077 0.923 27 H 0.059 0.941 28 H 0.083 0.917 29 H 0.070 0.930 30 H 0.075 0.925 31 H 0.153 0.847 32 H 0.087 0.913 33 H 0.009 0.991 34 H 0.065 0.935 35 H 0.076 0.924 36 H 0.093 0.907 37 H 0.101 0.899 38 H 0.075 0.925 39 H 0.084 0.916 40 H 0.116 0.884 41 H 0.075 0.925 42 H 0.085 0.915 43 H 0.073 0.927 44 H 0.076 0.924 45 H 0.086 0.914 46 H 0.073 0.927 47 H 0.085 0.915 48 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -12.266 0.445 -9.655 15.616 hybrid contribution -0.253 0.235 0.123 0.367 sum -12.519 0.680 -9.532 15.750 Atomic orbital electron populations 1.23321 0.83407 1.02214 1.00879 1.88002 1.17888 1.27396 1.94785 1.21480 0.93582 0.82427 0.92694 1.22056 0.90821 0.97654 0.93879 0.90492 1.22918 0.99092 1.01821 1.01054 1.60222 1.36680 1.07470 1.23414 1.21538 0.93813 0.96983 0.89626 1.18845 0.94624 0.94727 0.86814 1.20271 0.97412 1.02554 1.29588 0.92347 1.24908 0.97966 0.95043 0.95499 1.70015 1.28591 1.11335 1.42820 0.86691 0.81910 0.78913 0.81004 1.20694 1.21749 1.20081 1.23010 0.96422 0.95342 1.10731 1.22470 0.99078 0.95773 1.01870 1.21426 0.94544 1.02503 0.95132 1.21518 0.99135 0.99402 0.95524 1.21541 0.95482 1.00017 0.98531 1.21570 0.97306 1.01227 0.95372 1.22296 1.00478 1.00093 0.95972 0.90852 0.92342 0.94089 0.91703 0.93017 0.92475 0.84710 0.91301 0.99064 0.93505 0.92400 0.90659 0.89880 0.92460 0.91624 0.88364 0.92485 0.91495 0.92682 0.92404 0.91391 0.92663 0.91544 0.91113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 -0.02 8.91 101.05 0.90 0.88 16 2 O -0.36 -5.42 9.12 -35.23 -0.32 -5.74 16 3 C 0.14 2.01 0.45 -90.62 -0.04 1.97 16 4 C 0.07 1.07 1.96 -67.71 -0.13 0.94 16 5 H 0.08 1.30 7.71 -51.93 -0.40 0.90 16 6 C -0.19 -2.55 7.44 37.16 0.28 -2.27 16 7 N -0.65 -12.50 5.02 -106.73 -0.54 -13.03 16 8 C 0.11 2.39 5.37 -3.83 -0.02 2.37 16 9 C 0.05 1.24 1.66 -155.66 -0.26 0.98 16 10 C -0.46 -12.52 8.61 -34.44 -0.30 -12.82 16 11 H 0.06 1.63 7.81 -52.49 -0.41 1.22 16 12 C 0.07 1.85 5.42 -17.82 -0.10 1.75 16 13 N -0.89 -25.37 12.68 55.43 0.70 -24.67 16 14 Si 0.89 21.67 29.54 -169.99 -5.02 16.65 16 15 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 16 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 17 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 18 C -0.22 -4.82 9.94 -26.69 -0.27 -5.09 16 19 C -0.15 -3.69 9.19 -26.69 -0.25 -3.93 16 20 C -0.10 -1.61 4.76 -26.73 -0.13 -1.74 16 21 C -0.12 -1.66 5.78 -26.73 -0.15 -1.81 16 22 C -0.12 -1.39 5.92 -26.73 -0.16 -1.55 16 23 C -0.12 -1.30 5.38 -26.73 -0.14 -1.44 16 24 C -0.15 -1.80 3.91 -26.73 -0.10 -1.91 16 25 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 26 H 0.06 0.65 3.68 -51.93 -0.19 0.45 16 27 H 0.04 0.43 4.93 -51.93 -0.26 0.17 16 28 H 0.06 0.86 6.11 -51.93 -0.32 0.55 16 29 H 0.05 0.71 7.97 -51.93 -0.41 0.30 16 30 H 0.06 0.65 5.33 -51.93 -0.28 0.38 16 31 H 0.33 6.42 8.36 -39.29 -0.33 6.10 16 32 H 0.07 1.68 7.92 -51.93 -0.41 1.27 16 33 H -0.01 -0.18 7.90 -51.93 -0.41 -0.59 16 34 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 35 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 36 H 0.07 1.68 8.14 -51.93 -0.42 1.25 16 37 H 0.08 2.15 8.14 -51.93 -0.42 1.73 16 38 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 39 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 40 H 0.10 1.95 7.52 -51.93 -0.39 1.55 16 41 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 42 H 0.07 0.98 7.68 -51.93 -0.40 0.58 16 43 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 44 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 45 H 0.07 0.77 5.94 -51.93 -0.31 0.47 16 46 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 47 H 0.07 0.72 4.89 -51.93 -0.25 0.47 16 48 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 LS Contribution 353.99 15.07 5.33 5.33 Total: -1.00 -27.89 353.99 -9.26 -37.16 By element: Atomic # 1 Polarization: 16.52 SS G_CDS: -8.55 Total: 7.97 kcal Atomic # 6 Polarization: -22.80 SS G_CDS: -0.87 Total: -23.67 kcal Atomic # 7 Polarization: -37.87 SS G_CDS: 0.17 Total: -37.70 kcal Atomic # 8 Polarization: -5.42 SS G_CDS: -0.32 Total: -5.74 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -27.89 -9.26 -37.16 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000421856787.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.539 kcal (2) G-P(sol) polarization free energy of solvation -27.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.156 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.43 seconds