Wall clock time and date at job start Tue Mar 31 2020 05:46:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42901 * 113.99827 * 2 1 4 4 C 1.53002 * 109.47310 * 64.12267 * 3 2 1 5 5 H 1.08997 * 109.47653 * 172.25184 * 4 3 2 6 6 C 1.52999 * 109.47207 * 52.24786 * 4 3 2 7 7 N 1.46907 * 109.46678 * 292.25071 * 4 3 2 8 8 C 1.46899 * 110.99607 * 232.25410 * 7 4 3 9 9 C 1.52999 * 109.47024 * 174.90661 * 8 7 4 10 10 C 1.50703 * 115.55009 * 296.43754 * 9 8 7 11 11 H 1.08008 * 119.99723 * 95.10898 * 10 9 8 12 12 C 1.37873 * 120.00028 * 274.83610 * 10 9 8 13 13 N 1.31512 * 120.00230 * 355.82205 * 12 10 9 14 14 Si 1.86802 * 120.00036 * 175.82612 * 12 10 9 15 15 H 1.48496 * 109.47432 * 89.99571 * 14 12 10 16 16 H 1.48497 * 109.47272 * 209.99900 * 14 12 10 17 17 H 1.48510 * 109.46943 * 329.99940 * 14 12 10 18 18 C 1.53001 * 117.49936 * 82.10806 * 9 8 7 19 19 C 1.52995 * 117.50310 * 150.76613 * 9 8 7 20 20 C 1.53008 * 109.46983 * 184.11674 * 3 2 1 21 21 C 1.53002 * 109.46613 * 60.00167 * 20 3 2 22 22 C 1.52993 * 109.47370 * 60.00045 * 21 20 3 23 23 C 1.53003 * 109.47349 * 300.00089 * 22 21 20 24 24 C 1.52993 * 109.47240 * 304.11776 * 3 2 1 25 25 H 1.09001 * 109.47382 * 171.04043 * 1 2 3 26 26 H 1.09007 * 109.46990 * 291.04295 * 1 2 3 27 27 H 1.09002 * 109.47427 * 51.03922 * 1 2 3 28 28 H 1.09000 * 109.47289 * 299.99772 * 6 4 3 29 29 H 1.08997 * 109.46810 * 60.00502 * 6 4 3 30 30 H 1.09000 * 109.47226 * 180.02562 * 6 4 3 31 31 H 1.00895 * 110.99868 * 108.30687 * 7 4 3 32 32 H 1.08999 * 109.47127 * 54.90820 * 8 7 4 33 33 H 1.08995 * 109.47527 * 294.90349 * 8 7 4 34 34 H 0.96999 * 120.00296 * 180.02562 * 13 12 10 35 35 H 1.08996 * 117.49891 * 215.00517 * 18 9 8 36 36 H 1.08994 * 117.49730 * 0.02562 * 18 9 8 37 37 H 1.09007 * 117.49861 * 359.97438 * 19 9 8 38 38 H 1.09000 * 117.50015 * 144.96929 * 19 9 8 39 39 H 1.09003 * 109.46857 * 180.02562 * 20 3 2 40 40 H 1.08997 * 109.47433 * 300.00330 * 20 3 2 41 41 H 1.08997 * 109.46991 * 299.99405 * 21 20 3 42 42 H 1.09005 * 109.46912 * 179.97438 * 21 20 3 43 43 H 1.09000 * 109.47348 * 179.97438 * 22 21 20 44 44 H 1.09003 * 109.47263 * 59.99404 * 22 21 20 45 45 H 1.09003 * 109.46379 * 299.99857 * 23 22 21 46 46 H 1.09000 * 109.47493 * 180.02562 * 23 22 21 47 47 H 1.09000 * 109.47243 * 60.00374 * 24 3 2 48 48 H 1.09003 * 109.47263 * 179.97438 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.6424 2.0275 1.2979 5 1 2.1948 2.9650 1.3612 6 6 2.0013 1.1424 2.4932 7 7 0.2003 2.3069 1.3110 8 6 -0.0584 3.7262 1.5881 9 6 -1.5582 4.0041 1.4685 10 6 -2.1503 3.7972 0.0982 11 1 -2.6189 2.8566 -0.1512 12 6 -2.0988 4.8106 -0.8352 13 7 -1.6073 5.9848 -0.5046 14 14 -2.7272 4.5160 -2.5695 15 1 -4.1696 4.8620 -2.6389 16 1 -1.9680 5.3653 -3.5221 17 1 -2.5435 3.0861 -2.9263 18 6 -2.4370 3.6701 2.6756 19 6 -2.1387 5.1302 2.3262 20 6 3.5321 1.1862 -0.1036 21 6 3.8998 0.4642 -1.4014 22 6 3.3681 1.2591 -2.5956 23 6 1.8462 1.3786 -2.4920 24 6 1.4785 2.1005 -1.1942 25 1 -0.3634 -1.0151 -0.1600 26 1 -0.3633 0.3690 0.9592 27 1 -0.3634 0.6462 -0.7991 28 1 1.4489 0.2049 2.4299 29 1 3.0713 0.9351 2.4834 30 1 1.7389 1.6566 3.4177 31 1 -0.2765 1.7161 1.9755 32 1 0.4835 4.3413 0.8697 33 1 0.2762 3.9662 2.5973 34 1 -1.5714 6.6979 -1.1612 35 1 -3.4434 3.3007 2.4786 36 1 -1.9466 3.2528 3.5550 37 1 -1.4521 5.6729 2.9761 38 1 -2.9485 5.7217 1.8992 39 1 3.9754 2.1820 -0.1031 40 1 3.9109 0.6198 0.7472 41 1 3.4565 -0.5316 -1.4013 42 1 4.9840 0.3796 -1.4755 43 1 3.6304 0.7450 -3.5202 44 1 3.8114 2.2550 -2.5956 45 1 1.4029 0.3827 -2.4920 46 1 1.4674 1.9445 -3.3430 47 1 0.3943 2.1855 -1.1204 48 1 1.9214 3.0964 -1.1939 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000421856788.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:23 Heat of formation + Delta-G solvation = -29.474436 kcal Electronic energy + Delta-G solvation = -24738.957951 eV Core-core repulsion = 21601.271639 eV Total energy + Delta-G solvation = -3137.686312 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -39.88469 -36.95602 -35.56220 -34.51105 -31.82690 -31.09822 -29.96227 -28.50035 -25.97651 -25.58970 -24.28923 -22.65205 -22.07460 -21.02570 -20.05867 -19.38344 -18.77680 -16.28875 -15.78560 -15.20819 -15.03378 -14.78479 -14.60872 -14.20895 -13.86015 -13.35705 -13.21970 -13.14645 -12.89979 -12.73690 -12.11452 -12.02296 -11.77924 -11.72075 -11.57443 -11.29676 -11.21791 -11.04911 -10.90075 -10.72317 -10.64237 -10.47233 -10.39139 -10.22222 -10.13883 -9.85951 -9.60392 -9.20161 -8.98122 -8.81140 -8.31649 -8.01409 -7.41954 -5.93676 -3.95895 3.33194 3.40952 3.44766 4.30596 4.47446 4.66222 5.05825 5.09079 5.18070 5.29878 5.36474 5.46252 5.47901 5.60048 5.63794 5.73978 5.85872 5.88041 5.90231 5.98276 6.05739 6.07773 6.15236 6.18161 6.25727 6.31104 6.32400 6.37113 6.39279 6.48812 6.51048 6.51915 6.57986 6.58329 6.70234 6.77057 6.83605 6.92071 7.16169 7.17522 7.53388 7.59128 7.82712 7.95519 7.98832 8.15628 8.57301 9.02825 9.67106 11.15328 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.015660 B = 0.007209 C = 0.005684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1787.614676 B = 3883.196512 C = 4925.163811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.382 6.382 3 C 0.140 3.860 4 C 0.058 3.942 5 H 0.066 0.934 6 C -0.165 4.165 7 N -0.659 5.659 8 C 0.106 3.894 9 C 0.051 3.949 10 C -0.465 4.465 11 H 0.057 0.943 12 C 0.069 3.931 13 N -0.885 5.885 14 Si 0.882 3.118 15 H -0.285 1.285 16 H -0.289 1.289 17 H -0.272 1.272 18 C -0.218 4.218 19 C -0.153 4.153 20 C -0.106 4.106 21 C -0.112 4.112 22 C -0.118 4.118 23 C -0.116 4.116 24 C -0.138 4.138 25 H 0.057 0.943 26 H 0.057 0.943 27 H 0.056 0.944 28 H 0.064 0.936 29 H 0.056 0.944 30 H 0.046 0.954 31 H 0.332 0.668 32 H 0.071 0.929 33 H -0.007 1.007 34 H 0.256 0.744 35 H 0.075 0.925 36 H 0.057 0.943 37 H 0.057 0.943 38 H 0.083 0.917 39 H 0.068 0.932 40 H 0.064 0.936 41 H 0.068 0.932 42 H 0.052 0.948 43 H 0.053 0.947 44 H 0.056 0.944 45 H 0.062 0.938 46 H 0.054 0.946 47 H 0.102 0.898 48 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.045 -8.984 1.275 12.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.301 6.301 3 C 0.099 3.901 4 C -0.053 4.053 5 H 0.084 0.916 6 C -0.223 4.223 7 N -0.291 5.291 8 C -0.022 4.022 9 C 0.051 3.949 10 C -0.503 4.503 11 H 0.076 0.924 12 C -0.132 4.132 13 N -0.523 5.523 14 Si 0.710 3.290 15 H -0.211 1.211 16 H -0.215 1.215 17 H -0.197 1.197 18 C -0.255 4.255 19 C -0.192 4.192 20 C -0.143 4.143 21 C -0.149 4.149 22 C -0.155 4.155 23 C -0.154 4.154 24 C -0.176 4.176 25 H 0.075 0.925 26 H 0.075 0.925 27 H 0.075 0.925 28 H 0.083 0.917 29 H 0.075 0.925 30 H 0.065 0.935 31 H 0.151 0.849 32 H 0.089 0.911 33 H 0.011 0.989 34 H 0.066 0.934 35 H 0.093 0.907 36 H 0.076 0.924 37 H 0.075 0.925 38 H 0.102 0.898 39 H 0.087 0.913 40 H 0.083 0.917 41 H 0.087 0.913 42 H 0.071 0.929 43 H 0.072 0.928 44 H 0.074 0.926 45 H 0.081 0.919 46 H 0.073 0.927 47 H 0.120 0.880 48 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 9.149 -8.876 0.517 12.758 hybrid contribution -0.323 0.429 0.041 0.539 sum 8.827 -8.447 0.559 12.230 Atomic orbital electron populations 1.22863 0.80769 0.99866 1.02726 1.87749 1.20234 1.27120 1.95019 1.21348 0.91699 0.83296 0.93730 1.22182 0.91024 0.97759 0.94341 0.91621 1.22272 1.01804 1.00712 0.97552 1.60829 1.06097 1.06439 1.55694 1.21640 0.97845 0.87263 0.95473 1.18832 0.88760 0.96977 0.90374 1.20241 1.36179 0.99033 0.94863 0.92437 1.24899 0.95285 0.95065 0.98000 1.70008 1.46089 1.02302 1.33888 0.86760 0.78585 0.78307 0.85328 1.21093 1.21455 1.19721 1.22988 1.01498 1.00445 1.00567 1.22482 1.03389 0.89974 1.03316 1.21559 0.94011 1.00704 0.98070 1.21416 0.99267 0.99889 0.94334 1.21535 0.96640 0.99816 0.97532 1.21481 0.95077 1.00913 0.97931 1.22007 1.04697 0.98000 0.92879 0.92456 0.92463 0.92531 0.91689 0.92513 0.93467 0.84853 0.91081 0.98874 0.93402 0.90667 0.92408 0.92468 0.89830 0.91319 0.91734 0.91309 0.92919 0.92830 0.92555 0.91901 0.92727 0.87953 0.92189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.53 9.44 101.05 0.95 1.49 16 2 O -0.38 -5.98 8.04 -35.23 -0.28 -6.26 16 3 C 0.14 2.11 0.36 -90.62 -0.03 2.08 16 4 C 0.06 0.90 2.01 -67.71 -0.14 0.76 16 5 H 0.07 1.08 7.50 -51.93 -0.39 0.69 16 6 C -0.17 -2.23 8.60 37.16 0.32 -1.91 16 7 N -0.66 -11.75 3.12 -106.72 -0.33 -12.09 16 8 C 0.11 2.23 5.22 -3.82 -0.02 2.21 16 9 C 0.05 1.20 1.63 -155.66 -0.25 0.94 16 10 C -0.47 -12.08 8.71 -34.44 -0.30 -12.38 16 11 H 0.06 1.52 7.82 -52.48 -0.41 1.11 16 12 C 0.07 1.85 5.43 -17.82 -0.10 1.75 16 13 N -0.88 -24.57 12.66 55.43 0.70 -23.87 16 14 Si 0.88 21.02 29.54 -169.99 -5.02 16.00 16 15 H -0.28 -6.82 7.11 56.52 0.40 -6.41 16 16 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 17 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 18 C -0.22 -4.63 9.96 -26.70 -0.27 -4.89 16 19 C -0.15 -3.58 9.15 -26.70 -0.24 -3.82 16 20 C -0.11 -1.39 4.74 -26.73 -0.13 -1.51 16 21 C -0.11 -1.38 5.78 -26.73 -0.15 -1.54 16 22 C -0.12 -1.52 5.92 -26.73 -0.16 -1.68 16 23 C -0.12 -1.77 5.78 -26.73 -0.15 -1.92 16 24 C -0.14 -2.35 4.01 -26.74 -0.11 -2.46 16 25 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 26 H 0.06 0.91 4.86 -51.92 -0.25 0.66 16 27 H 0.06 1.00 5.88 -51.93 -0.31 0.69 16 28 H 0.06 0.89 7.14 -51.93 -0.37 0.52 16 29 H 0.06 0.69 6.66 -51.93 -0.35 0.35 16 30 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.33 5.73 6.60 -39.29 -0.26 5.47 16 32 H 0.07 1.68 8.05 -51.93 -0.42 1.26 16 33 H -0.01 -0.14 8.10 -51.93 -0.42 -0.56 16 34 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 35 H 0.07 1.61 8.14 -51.93 -0.42 1.19 16 36 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 37 H 0.06 1.27 8.14 -51.92 -0.42 0.85 16 38 H 0.08 2.12 8.14 -51.93 -0.42 1.69 16 39 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 40 H 0.06 0.80 6.66 -51.93 -0.35 0.45 16 41 H 0.07 0.91 7.68 -51.93 -0.40 0.51 16 42 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 43 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 44 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 45 H 0.06 0.97 7.62 -51.93 -0.40 0.57 16 46 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 47 H 0.10 2.07 5.59 -51.93 -0.29 1.78 16 48 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 LS Contribution 357.61 15.07 5.39 5.39 Total: -1.00 -26.27 357.61 -9.14 -35.41 By element: Atomic # 1 Polarization: 17.10 SS G_CDS: -8.81 Total: 8.29 kcal Atomic # 6 Polarization: -22.10 SS G_CDS: -0.78 Total: -22.88 kcal Atomic # 7 Polarization: -36.32 SS G_CDS: 0.37 Total: -35.95 kcal Atomic # 8 Polarization: -5.98 SS G_CDS: -0.28 Total: -6.26 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -26.27 -9.14 -35.41 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000421856788.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.932 kcal (2) G-P(sol) polarization free energy of solvation -26.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.406 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds