Wall clock time and date at job start Tue Mar 31 2020 05:21:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09001 * 109.47372 * 2 1 4 4 C 1.52997 * 109.46975 * 239.99628 * 2 1 3 5 5 C 1.53006 * 109.47164 * 180.02562 * 4 2 1 6 6 C 1.52997 * 109.47127 * 59.99836 * 5 4 2 7 7 C 1.53000 * 109.47060 * 300.00449 * 6 5 4 8 8 C 1.52996 * 109.47328 * 60.00126 * 7 6 5 9 9 H 1.08992 * 109.47554 * 59.99639 * 8 7 6 10 10 C 1.50701 * 109.46990 * 180.02562 * 8 7 6 11 11 O 1.21289 * 119.99822 * 119.99794 * 10 8 7 12 12 N 1.34777 * 120.00115 * 299.99704 * 10 8 7 13 13 C 1.46492 * 120.00147 * 180.02562 * 12 10 8 14 14 C 1.52997 * 109.47244 * 180.02562 * 13 12 10 15 15 C 1.53002 * 109.47143 * 299.99793 * 14 13 12 16 16 C 1.53006 * 109.47269 * 60.00168 * 14 13 12 17 17 C 1.53005 * 109.47452 * 179.97438 * 14 13 12 18 18 C 1.50703 * 109.47304 * 179.97438 * 17 14 13 19 19 H 1.07996 * 119.99751 * 0.02562 * 18 17 14 20 20 C 1.37880 * 119.99788 * 180.02562 * 18 17 14 21 21 N 1.31510 * 119.99893 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 119.99425 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.47070 * 90.00397 * 22 20 18 24 24 H 1.48508 * 109.46790 * 209.99893 * 22 20 18 25 25 H 1.48498 * 109.47467 * 329.99399 * 22 20 18 26 26 H 1.08996 * 109.47261 * 300.00539 * 1 2 3 27 27 H 1.09004 * 109.47368 * 60.00155 * 1 2 3 28 28 H 1.09001 * 109.47372 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47375 * 300.00370 * 4 2 1 30 30 H 1.09000 * 109.47140 * 60.00388 * 4 2 1 31 31 H 1.08998 * 109.46505 * 299.99708 * 5 4 2 32 32 H 1.08996 * 109.46884 * 180.02562 * 5 4 2 33 33 H 1.09002 * 109.47153 * 180.02562 * 6 5 4 34 34 H 1.09001 * 109.46832 * 60.00321 * 6 5 4 35 35 H 1.09004 * 109.46724 * 180.02562 * 7 6 5 36 36 H 1.09001 * 109.47194 * 299.99650 * 7 6 5 37 37 H 0.97003 * 119.99640 * 0.02562 * 12 10 8 38 38 H 1.09001 * 109.47164 * 299.99749 * 13 12 10 39 39 H 1.09002 * 109.47696 * 60.00100 * 13 12 10 40 40 H 1.09004 * 109.46930 * 59.99935 * 15 14 13 41 41 H 1.09004 * 109.47059 * 179.97438 * 15 14 13 42 42 H 1.08992 * 109.47060 * 300.00021 * 15 14 13 43 43 H 1.08998 * 109.46876 * 59.99557 * 16 14 13 44 44 H 1.09000 * 109.47192 * 180.02562 * 16 14 13 45 45 H 1.09001 * 109.46289 * 300.00045 * 16 14 13 46 46 H 1.09001 * 109.46812 * 300.00216 * 17 14 13 47 47 H 1.09002 * 109.46935 * 59.99874 * 17 14 13 48 48 H 0.97000 * 119.99919 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 3.5700 -0.7219 -1.2489 6 6 4.0795 -1.4434 0.0004 7 6 3.5694 -0.7221 1.2496 8 6 2.0395 -0.7216 1.2493 9 1 1.6757 -1.7490 1.2491 10 6 1.5371 -0.0106 2.4794 11 8 0.8402 0.9758 2.3676 12 7 1.8623 -0.4707 3.7037 13 6 1.3736 0.2202 4.8995 14 6 1.8837 -0.5003 6.1491 15 6 1.3742 -1.9430 6.1497 16 6 3.4138 -0.4997 6.1494 17 6 1.3738 0.2216 7.3980 18 6 1.8757 -0.4885 8.6289 19 1 2.4967 -1.3666 8.5302 20 6 1.5422 -0.0171 9.8809 21 7 0.7856 1.0518 10.0010 22 14 2.1650 -0.8969 11.4065 23 1 3.4728 -0.3212 11.8107 24 1 1.1865 -0.7261 12.5105 25 1 2.3306 -2.3428 11.1112 26 1 -0.3633 0.5139 0.8899 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 1.6765 -1.7490 -1.2492 30 1 1.6766 -0.2075 -2.1392 31 1 3.9336 0.3056 -1.2488 32 1 3.9332 -1.2354 -2.1391 33 1 5.1695 -1.4434 0.0008 34 1 3.7158 -2.4709 0.0002 35 1 3.9328 -1.2359 2.1396 36 1 3.9331 0.3055 1.2498 37 1 2.4200 -1.2593 3.7931 38 1 1.7369 1.2479 4.8994 39 1 0.2836 0.2202 4.8992 40 1 1.7379 -2.4571 5.2599 41 1 1.7380 -2.4565 7.0397 42 1 0.2843 -1.9434 6.1495 43 1 3.7766 0.5281 6.1489 44 1 3.7772 -1.0134 7.0394 45 1 3.7773 -1.0138 5.2596 46 1 1.7371 1.2493 7.3974 47 1 0.2838 0.2215 7.3981 48 1 0.5513 1.3837 10.8818 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424855541.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:27 Heat of formation + Delta-G solvation = -88.567133 kcal Electronic energy + Delta-G solvation = -23139.136467 eV Core-core repulsion = 19998.887704 eV Total energy + Delta-G solvation = -3140.248763 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.35774 -38.12119 -36.86271 -33.74550 -32.54989 -32.15801 -31.08226 -27.25830 -26.82726 -26.51852 -25.84875 -23.66616 -22.66844 -21.42636 -20.38772 -19.73591 -18.27909 -16.87152 -16.32214 -15.64513 -15.24210 -14.70546 -14.60451 -14.53431 -14.29438 -14.13284 -13.78126 -13.15413 -12.96872 -12.85903 -12.57477 -12.40325 -12.13293 -12.06063 -11.90758 -11.59736 -11.36690 -11.13597 -11.04434 -11.01716 -10.86119 -10.70510 -10.64216 -10.57653 -10.41198 -10.28532 -10.22340 -9.87662 -9.45699 -9.09257 -8.91630 -8.65508 -8.36417 -6.00384 -4.01741 2.86299 3.30389 3.37388 3.38888 3.49017 4.43102 4.44631 4.51010 4.56521 4.92714 4.98461 5.11500 5.21448 5.21987 5.30534 5.35129 5.35691 5.51834 5.61076 5.62271 5.63340 5.74920 5.78061 5.82477 5.87980 5.89496 5.97167 6.05701 6.12448 6.16889 6.22825 6.30085 6.34878 6.39580 6.45473 6.62252 6.62430 6.81302 7.06097 7.06859 7.13059 7.63677 7.76101 7.80335 7.98416 8.39937 8.50756 9.03128 9.61417 11.11107 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.035212 B = 0.003307 C = 0.003142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 794.986527 B = 8463.642660 C = 8907.996240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.068 4.068 3 H 0.075 0.925 4 C -0.115 4.115 5 C -0.122 4.122 6 C -0.117 4.117 7 C -0.111 4.111 8 C -0.103 4.103 9 H 0.093 0.907 10 C 0.511 3.489 11 O -0.541 6.541 12 N -0.721 5.721 13 C 0.128 3.872 14 C -0.073 4.073 15 C -0.127 4.127 16 C -0.126 4.126 17 C 0.036 3.964 18 C -0.511 4.511 19 H 0.059 0.941 20 C 0.056 3.944 21 N -0.895 5.895 22 Si 0.889 3.111 23 H -0.281 1.281 24 H -0.287 1.287 25 H -0.274 1.274 26 H 0.085 0.915 27 H 0.048 0.952 28 H 0.044 0.956 29 H 0.061 0.939 30 H 0.063 0.937 31 H 0.062 0.938 32 H 0.060 0.940 33 H 0.064 0.936 34 H 0.063 0.937 35 H 0.067 0.933 36 H 0.068 0.932 37 H 0.397 0.603 38 H 0.062 0.938 39 H 0.062 0.938 40 H 0.028 0.972 41 H 0.066 0.934 42 H 0.047 0.953 43 H 0.047 0.953 44 H 0.066 0.934 45 H 0.028 0.972 46 H 0.018 0.982 47 H 0.018 0.982 48 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.264 -6.227 -20.849 22.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.087 4.087 3 H 0.093 0.907 4 C -0.152 4.152 5 C -0.159 4.159 6 C -0.155 4.155 7 C -0.149 4.149 8 C -0.124 4.124 9 H 0.111 0.889 10 C 0.297 3.703 11 O -0.419 6.419 12 N -0.373 5.373 13 C 0.005 3.995 14 C -0.073 4.073 15 C -0.184 4.184 16 C -0.184 4.184 17 C -0.001 4.001 18 C -0.550 4.550 19 H 0.077 0.923 20 C -0.145 4.145 21 N -0.534 5.534 22 Si 0.717 3.283 23 H -0.208 1.208 24 H -0.213 1.213 25 H -0.199 1.199 26 H 0.104 0.896 27 H 0.067 0.933 28 H 0.063 0.937 29 H 0.080 0.920 30 H 0.082 0.918 31 H 0.081 0.919 32 H 0.079 0.921 33 H 0.083 0.917 34 H 0.082 0.918 35 H 0.086 0.914 36 H 0.087 0.913 37 H 0.232 0.768 38 H 0.081 0.919 39 H 0.081 0.919 40 H 0.047 0.953 41 H 0.085 0.915 42 H 0.066 0.934 43 H 0.066 0.934 44 H 0.085 0.915 45 H 0.047 0.953 46 H 0.036 0.964 47 H 0.036 0.964 48 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 4.670 -5.400 -20.773 21.965 hybrid contribution 0.544 -0.799 1.064 1.437 sum 5.213 -6.199 -19.709 21.308 Atomic orbital electron populations 1.22073 0.94739 1.01373 1.03500 1.20874 0.96232 0.99440 0.92154 0.90659 1.21634 0.95281 1.00674 0.97636 1.21564 0.95870 1.00852 0.97637 1.21524 1.00323 0.99359 0.94257 1.21533 0.93132 1.01744 0.98523 1.21402 0.96781 1.00726 0.93484 0.88900 1.20592 0.80314 0.84758 0.84683 1.90621 1.38102 1.26564 1.86643 1.46251 1.53143 1.31911 1.05955 1.21603 0.98826 0.95994 0.83087 1.20904 0.95445 0.95836 0.95133 1.21756 1.00522 0.95919 1.00187 1.21756 0.95311 1.01117 1.00176 1.19087 0.96336 0.95191 0.89503 1.21186 1.31156 1.12080 0.90535 0.92268 1.25015 0.95300 0.95099 0.99089 1.69964 1.36892 1.23079 1.23455 0.86650 0.78569 0.80027 0.83075 1.20771 1.21337 1.19943 0.89603 0.93260 0.93656 0.92019 0.91841 0.91934 0.92101 0.91730 0.91810 0.91396 0.91322 0.76781 0.91933 0.91932 0.95290 0.91457 0.93393 0.93392 0.91473 0.95287 0.96386 0.96378 0.93035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.84 8.87 37.16 0.33 -1.51 16 2 C -0.07 -0.72 1.89 -90.62 -0.17 -0.90 16 3 H 0.07 0.91 8.10 -51.93 -0.42 0.49 16 4 C -0.11 -0.95 5.20 -26.73 -0.14 -1.08 16 5 C -0.12 -0.91 5.92 -26.73 -0.16 -1.07 16 6 C -0.12 -0.87 5.92 -26.73 -0.16 -1.03 16 7 C -0.11 -1.02 5.10 -26.73 -0.14 -1.15 16 8 C -0.10 -1.10 2.06 -91.77 -0.19 -1.29 16 9 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 10 C 0.51 7.41 6.86 -10.98 -0.08 7.33 16 11 O -0.54 -9.81 13.66 5.55 0.08 -9.73 16 12 N -0.72 -10.33 4.85 -60.30 -0.29 -10.62 16 13 C 0.13 2.26 4.56 -4.05 -0.02 2.24 16 14 C -0.07 -1.37 0.54 -154.50 -0.08 -1.46 16 15 C -0.13 -2.21 8.05 37.16 0.30 -1.91 16 16 C -0.13 -2.20 8.05 37.16 0.30 -1.90 16 17 C 0.04 0.89 4.04 -27.88 -0.11 0.78 16 18 C -0.51 -13.55 7.65 -34.44 -0.26 -13.81 16 19 H 0.06 1.51 5.68 -52.49 -0.30 1.21 16 20 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 21 N -0.89 -26.44 13.29 55.43 0.74 -25.70 16 22 Si 0.89 21.16 29.54 -169.99 -5.02 16.14 16 23 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 24 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 25 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 26 H 0.09 1.25 5.51 -51.93 -0.29 0.96 16 27 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.07 0.58 7.57 -51.93 -0.39 0.19 16 36 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.40 4.84 5.58 -40.82 -0.23 4.62 16 38 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 39 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 40 H 0.03 0.41 6.86 -51.93 -0.36 0.05 16 41 H 0.07 1.27 6.62 -51.93 -0.34 0.92 16 42 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 43 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 44 H 0.07 1.26 6.62 -51.93 -0.34 0.91 16 45 H 0.03 0.41 6.86 -51.93 -0.36 0.05 16 46 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 47 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 48 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 LS Contribution 360.80 15.07 5.44 5.44 Total: -1.00 -29.83 360.80 -8.66 -38.50 By element: Atomic # 1 Polarization: 10.20 SS G_CDS: -8.92 Total: 1.28 kcal Atomic # 6 Polarization: -14.62 SS G_CDS: -0.68 Total: -15.29 kcal Atomic # 7 Polarization: -36.77 SS G_CDS: 0.44 Total: -36.32 kcal Atomic # 8 Polarization: -9.81 SS G_CDS: 0.08 Total: -9.73 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -29.83 -8.66 -38.50 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424855541.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.070 kcal (2) G-P(sol) polarization free energy of solvation -29.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.497 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds