Wall clock time and date at job start Tue Mar 31 2020 05:21:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09001 * 109.47372 * 2 1 4 4 C 1.52997 * 109.46975 * 239.99628 * 2 1 3 5 5 C 1.53006 * 109.47164 * 180.02562 * 4 2 1 6 6 C 1.52997 * 109.47127 * 59.99836 * 5 4 2 7 7 C 1.53000 * 109.47060 * 300.00449 * 6 5 4 8 8 C 1.52996 * 109.47328 * 60.00126 * 7 6 5 9 9 H 1.08992 * 109.47554 * 59.99639 * 8 7 6 10 10 C 1.50701 * 109.46990 * 180.02562 * 8 7 6 11 11 O 1.21289 * 119.99822 * 119.99794 * 10 8 7 12 12 N 1.34777 * 120.00115 * 299.99704 * 10 8 7 13 13 C 1.46492 * 120.00147 * 180.02562 * 12 10 8 14 14 C 1.52997 * 109.47244 * 180.02562 * 13 12 10 15 15 C 1.53002 * 109.47143 * 299.99793 * 14 13 12 16 16 C 1.53006 * 109.47269 * 60.00168 * 14 13 12 17 17 C 1.53005 * 109.47452 * 179.97438 * 14 13 12 18 18 C 1.50703 * 109.47304 * 179.97438 * 17 14 13 19 19 H 1.07996 * 119.99751 * 0.02562 * 18 17 14 20 20 C 1.37880 * 119.99788 * 180.02562 * 18 17 14 21 21 N 1.31510 * 119.99893 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 119.99425 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.47070 * 90.00397 * 22 20 18 24 24 H 1.48508 * 109.46790 * 209.99893 * 22 20 18 25 25 H 1.48498 * 109.47467 * 329.99399 * 22 20 18 26 26 H 1.08996 * 109.47261 * 300.00539 * 1 2 3 27 27 H 1.09004 * 109.47368 * 60.00155 * 1 2 3 28 28 H 1.09001 * 109.47372 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47375 * 300.00370 * 4 2 1 30 30 H 1.09000 * 109.47140 * 60.00388 * 4 2 1 31 31 H 1.08998 * 109.46505 * 299.99708 * 5 4 2 32 32 H 1.08996 * 109.46884 * 180.02562 * 5 4 2 33 33 H 1.09002 * 109.47153 * 180.02562 * 6 5 4 34 34 H 1.09001 * 109.46832 * 60.00321 * 6 5 4 35 35 H 1.09004 * 109.46724 * 180.02562 * 7 6 5 36 36 H 1.09001 * 109.47194 * 299.99650 * 7 6 5 37 37 H 0.97003 * 119.99640 * 0.02562 * 12 10 8 38 38 H 1.09001 * 109.47164 * 299.99749 * 13 12 10 39 39 H 1.09002 * 109.47696 * 60.00100 * 13 12 10 40 40 H 1.09004 * 109.46930 * 59.99935 * 15 14 13 41 41 H 1.09004 * 109.47059 * 179.97438 * 15 14 13 42 42 H 1.08992 * 109.47060 * 300.00021 * 15 14 13 43 43 H 1.08998 * 109.46876 * 59.99557 * 16 14 13 44 44 H 1.09000 * 109.47192 * 180.02562 * 16 14 13 45 45 H 1.09001 * 109.46289 * 300.00045 * 16 14 13 46 46 H 1.09001 * 109.46812 * 300.00216 * 17 14 13 47 47 H 1.09002 * 109.46935 * 59.99874 * 17 14 13 48 48 H 0.97000 * 119.99919 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 3.5700 -0.7219 -1.2489 6 6 4.0795 -1.4434 0.0004 7 6 3.5694 -0.7221 1.2496 8 6 2.0395 -0.7216 1.2493 9 1 1.6757 -1.7490 1.2491 10 6 1.5371 -0.0106 2.4794 11 8 0.8402 0.9758 2.3676 12 7 1.8623 -0.4707 3.7037 13 6 1.3736 0.2202 4.8995 14 6 1.8837 -0.5003 6.1491 15 6 1.3742 -1.9430 6.1497 16 6 3.4138 -0.4997 6.1494 17 6 1.3738 0.2216 7.3980 18 6 1.8757 -0.4885 8.6289 19 1 2.4967 -1.3666 8.5302 20 6 1.5422 -0.0171 9.8809 21 7 0.7856 1.0518 10.0010 22 14 2.1650 -0.8969 11.4065 23 1 3.4728 -0.3212 11.8107 24 1 1.1865 -0.7261 12.5105 25 1 2.3306 -2.3428 11.1112 26 1 -0.3633 0.5139 0.8899 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 1.6765 -1.7490 -1.2492 30 1 1.6766 -0.2075 -2.1392 31 1 3.9336 0.3056 -1.2488 32 1 3.9332 -1.2354 -2.1391 33 1 5.1695 -1.4434 0.0008 34 1 3.7158 -2.4709 0.0002 35 1 3.9328 -1.2359 2.1396 36 1 3.9331 0.3055 1.2498 37 1 2.4200 -1.2593 3.7931 38 1 1.7369 1.2479 4.8994 39 1 0.2836 0.2202 4.8992 40 1 1.7379 -2.4571 5.2599 41 1 1.7380 -2.4565 7.0397 42 1 0.2843 -1.9434 6.1495 43 1 3.7766 0.5281 6.1489 44 1 3.7772 -1.0134 7.0394 45 1 3.7773 -1.0138 5.2596 46 1 1.7371 1.2493 7.3974 47 1 0.2838 0.2215 7.3981 48 1 0.5513 1.3837 10.8818 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424855541.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:23 Heat of formation + Delta-G solvation = -104.946734 kcal Electronic energy + Delta-G solvation = -23139.846740 eV Core-core repulsion = 19998.887704 eV Total energy + Delta-G solvation = -3140.959036 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 1.77 seconds Orbital eigenvalues (eV) -41.44199 -39.28340 -38.17671 -35.30368 -34.04851 -33.26888 -31.95928 -29.11479 -27.98450 -27.96150 -27.03985 -25.07356 -24.00125 -22.22437 -21.40710 -20.64681 -19.78227 -18.38181 -18.01489 -16.92024 -16.43219 -16.40880 -15.60753 -15.52365 -15.25151 -15.16816 -14.94343 -14.68354 -14.40777 -14.08875 -13.94153 -13.61996 -13.47723 -13.11928 -12.87285 -12.73837 -12.69145 -12.57336 -12.38882 -12.33986 -12.23064 -12.09683 -11.97930 -11.75759 -11.54005 -11.50193 -11.32755 -11.06270 -10.94687 -10.86803 -10.51834 -10.36403 -9.98863 -8.14293 -6.22366 1.42531 1.43027 1.53419 1.70370 2.28033 2.45396 3.20202 3.63101 3.73277 3.81547 3.98222 4.08266 4.19482 4.23080 4.27340 4.36209 4.47738 4.52640 4.59767 4.62249 4.69938 4.72382 4.80307 4.81425 4.95411 4.96343 5.04174 5.09127 5.10582 5.12437 5.21756 5.26259 5.34435 5.38384 5.40488 5.42139 5.47069 5.49754 5.53327 5.56069 5.60797 5.66070 5.80079 5.89618 6.30009 6.64922 6.93094 7.34880 7.45619 8.98365 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.035212 B = 0.003307 C = 0.003142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 794.986527 B = 8463.642660 C = 8907.996240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.068 4.068 3 H 0.053 0.947 4 C -0.108 4.108 5 C -0.122 4.122 6 C -0.113 4.113 7 C -0.110 4.110 8 C -0.093 4.093 9 H 0.116 0.884 10 C 0.506 3.494 11 O -0.582 6.582 12 N -0.710 5.710 13 C 0.142 3.858 14 C -0.065 4.065 15 C -0.121 4.121 16 C -0.121 4.121 17 C 0.040 3.960 18 C -0.513 4.513 19 H 0.074 0.926 20 C -0.006 4.006 21 N -0.940 5.940 22 Si 0.959 3.041 23 H -0.276 1.276 24 H -0.290 1.290 25 H -0.258 1.258 26 H 0.051 0.949 27 H 0.056 0.944 28 H 0.057 0.943 29 H 0.074 0.926 30 H 0.067 0.933 31 H 0.054 0.946 32 H 0.077 0.923 33 H 0.075 0.925 34 H 0.077 0.923 35 H 0.079 0.921 36 H 0.053 0.947 37 H 0.412 0.588 38 H 0.042 0.958 39 H 0.042 0.958 40 H 0.070 0.930 41 H 0.056 0.944 42 H 0.035 0.965 43 H 0.035 0.965 44 H 0.056 0.944 45 H 0.071 0.929 46 H -0.016 1.016 47 H -0.016 1.016 48 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.278 -9.307 -22.445 25.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.087 4.087 3 H 0.071 0.929 4 C -0.146 4.146 5 C -0.159 4.159 6 C -0.150 4.150 7 C -0.148 4.148 8 C -0.114 4.114 9 H 0.133 0.867 10 C 0.295 3.705 11 O -0.463 6.463 12 N -0.362 5.362 13 C 0.018 3.982 14 C -0.065 4.065 15 C -0.178 4.178 16 C -0.178 4.178 17 C 0.003 3.997 18 C -0.551 4.551 19 H 0.092 0.908 20 C -0.203 4.203 21 N -0.581 5.581 22 Si 0.784 3.216 23 H -0.201 1.201 24 H -0.216 1.216 25 H -0.182 1.182 26 H 0.070 0.930 27 H 0.075 0.925 28 H 0.076 0.924 29 H 0.092 0.908 30 H 0.086 0.914 31 H 0.072 0.928 32 H 0.095 0.905 33 H 0.093 0.907 34 H 0.096 0.904 35 H 0.098 0.902 36 H 0.072 0.928 37 H 0.250 0.750 38 H 0.060 0.940 39 H 0.061 0.939 40 H 0.089 0.911 41 H 0.075 0.925 42 H 0.054 0.946 43 H 0.054 0.946 44 H 0.075 0.925 45 H 0.089 0.911 46 H 0.002 0.998 47 H 0.002 0.998 48 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 6.714 -8.517 -22.388 24.877 hybrid contribution -0.138 0.233 1.509 1.533 sum 6.576 -8.284 -20.879 23.405 Atomic orbital electron populations 1.22018 0.95632 1.01722 1.02142 1.20871 0.95484 0.98751 0.93615 0.92887 1.21588 0.95938 1.00914 0.96143 1.21580 0.95095 1.00739 0.98533 1.21519 1.00976 0.99626 0.92894 1.21562 0.91502 1.01472 1.00266 1.21436 0.98035 1.01021 0.90943 0.86652 1.21405 0.79314 0.84281 0.85547 1.90624 1.39844 1.28576 1.87207 1.46039 1.53212 1.32097 1.04871 1.21160 0.97548 0.95265 0.84267 1.20709 0.96768 0.96304 0.92746 1.21687 0.99841 0.94593 1.01684 1.21688 0.93505 1.00892 1.01706 1.18968 0.94169 0.94124 0.92475 1.21601 1.30388 1.12120 0.91039 0.90821 1.25967 0.95638 0.95880 1.02793 1.70126 1.38775 1.25074 1.24112 0.85530 0.77820 0.79510 0.78701 1.20134 1.21624 1.18212 0.93045 0.92524 0.92370 0.90769 0.91423 0.92757 0.90465 0.90651 0.90442 0.90220 0.92778 0.75022 0.94002 0.93941 0.91079 0.92541 0.94555 0.94579 0.92510 0.91058 0.99782 0.99766 0.93184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.55 8.87 71.98 0.64 -2.91 16 2 C -0.07 -1.36 1.89 -10.80 -0.02 -1.38 16 3 H 0.05 1.29 8.10 -2.39 -0.02 1.27 16 4 C -0.11 -1.49 5.20 30.60 0.16 -1.33 16 5 C -0.12 -1.44 5.92 30.60 0.18 -1.26 16 6 C -0.11 -1.25 5.92 30.59 0.18 -1.06 16 7 C -0.11 -1.69 5.10 30.59 0.16 -1.53 16 8 C -0.09 -1.79 2.06 -11.54 -0.02 -1.82 16 9 H 0.12 1.77 8.14 -2.39 -0.02 1.75 16 10 C 0.51 14.37 6.86 87.66 0.60 14.98 16 11 O -0.58 -21.80 13.66 -3.06 -0.04 -21.84 16 12 N -0.71 -19.35 4.85 -463.07 -2.25 -21.60 16 13 C 0.14 5.13 4.56 86.38 0.39 5.52 16 14 C -0.06 -2.45 0.54 -52.18 -0.03 -2.47 16 15 C -0.12 -4.02 8.05 71.98 0.58 -3.44 16 16 C -0.12 -4.00 8.05 71.98 0.58 -3.42 16 17 C 0.04 2.06 4.04 29.85 0.12 2.18 16 18 C -0.51 -27.53 7.65 25.60 0.20 -27.34 16 19 H 0.07 3.67 5.68 -2.91 -0.02 3.66 16 20 C -0.01 -0.34 5.46 84.66 0.46 0.12 16 21 N -0.94 -57.50 13.29 21.45 0.28 -57.21 16 22 Si 0.96 43.54 29.54 68.60 2.03 45.57 16 23 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 24 H -0.29 -13.22 7.11 99.48 0.71 -12.51 16 25 H -0.26 -10.95 7.11 99.48 0.71 -10.25 16 26 H 0.05 1.53 5.51 -2.39 -0.01 1.52 16 27 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 28 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 29 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 30 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 31 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 32 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 33 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 34 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 35 H 0.08 1.04 7.57 -2.39 -0.02 1.03 16 36 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 37 H 0.41 8.63 5.58 -92.71 -0.52 8.11 16 38 H 0.04 1.67 8.14 -2.39 -0.02 1.66 16 39 H 0.04 1.69 8.14 -2.39 -0.02 1.68 16 40 H 0.07 1.76 6.86 -2.38 -0.02 1.74 16 41 H 0.06 2.01 6.62 -2.39 -0.02 1.99 16 42 H 0.04 1.27 8.14 -2.39 -0.02 1.25 16 43 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16 44 H 0.06 2.01 6.62 -2.39 -0.02 2.00 16 45 H 0.07 1.75 6.86 -2.39 -0.02 1.73 16 46 H -0.02 -0.93 8.14 -2.39 -0.02 -0.95 16 47 H -0.02 -0.92 8.14 -2.39 -0.02 -0.94 16 48 H 0.26 15.06 8.31 -92.71 -0.77 14.29 16 Total: -1.00 -68.35 360.80 4.59 -63.76 By element: Atomic # 1 Polarization: 16.11 SS G_CDS: 0.39 Total: 16.50 kcal Atomic # 6 Polarization: -29.35 SS G_CDS: 4.18 Total: -25.17 kcal Atomic # 7 Polarization: -76.85 SS G_CDS: -1.96 Total: -78.81 kcal Atomic # 8 Polarization: -21.80 SS G_CDS: -0.04 Total: -21.84 kcal Atomic # 14 Polarization: 43.54 SS G_CDS: 2.03 Total: 45.57 kcal Total: -68.35 4.59 -63.76 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424855541.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.189 kcal (2) G-P(sol) polarization free energy of solvation -68.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.758 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.77 seconds