Wall clock time and date at job start Tue Mar 31 2020 05:21:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.08998 * 109.46862 * 2 1 4 4 C 1.52997 * 109.47482 * 239.99435 * 2 1 3 5 5 C 1.53000 * 109.47060 * 180.02562 * 4 2 1 6 6 C 1.52996 * 109.47328 * 60.00126 * 5 4 2 7 7 C 1.53002 * 109.46891 * 299.99597 * 6 5 4 8 8 C 1.52997 * 109.46978 * 60.00410 * 7 6 5 9 9 H 1.09000 * 109.47140 * 179.97438 * 8 7 6 10 10 C 1.50699 * 109.47265 * 59.99674 * 8 7 6 11 11 O 1.21282 * 120.00040 * 239.99701 * 10 8 7 12 12 N 1.34779 * 120.00033 * 60.00305 * 10 8 7 13 13 C 1.46500 * 120.00165 * 179.97438 * 12 10 8 14 14 C 1.52996 * 109.46993 * 179.97438 * 13 12 10 15 15 C 1.52997 * 109.47165 * 300.00048 * 14 13 12 16 16 C 1.52997 * 109.47131 * 60.00215 * 14 13 12 17 17 C 1.53002 * 109.46969 * 180.02562 * 14 13 12 18 18 C 1.50696 * 109.47300 * 180.02562 * 17 14 13 19 19 H 1.07999 * 119.99822 * 0.02562 * 18 17 14 20 20 C 1.37876 * 120.00339 * 179.97438 * 18 17 14 21 21 N 1.31514 * 120.00355 * 179.97438 * 20 18 17 22 22 Si 1.86803 * 119.99771 * 0.02562 * 20 18 17 23 23 H 1.48498 * 109.47174 * 89.99890 * 22 20 18 24 24 H 1.48501 * 109.47062 * 209.99841 * 22 20 18 25 25 H 1.48504 * 109.46913 * 329.99640 * 22 20 18 26 26 H 1.09001 * 109.47066 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.47747 * 300.00400 * 1 2 3 28 28 H 1.09002 * 109.47103 * 60.00812 * 1 2 3 29 29 H 1.09002 * 109.47153 * 59.99783 * 4 2 1 30 30 H 1.09001 * 109.46832 * 299.99974 * 4 2 1 31 31 H 1.09004 * 109.46724 * 180.02562 * 5 4 2 32 32 H 1.09001 * 109.47194 * 299.99650 * 5 4 2 33 33 H 1.08992 * 109.47554 * 59.99639 * 6 5 4 34 34 H 1.09004 * 109.47108 * 179.97438 * 6 5 4 35 35 H 1.09002 * 109.47097 * 180.02562 * 7 6 5 36 36 H 1.09001 * 109.47142 * 300.00176 * 7 6 5 37 37 H 0.96996 * 119.99850 * 359.97438 * 12 10 8 38 38 H 1.08996 * 109.47197 * 300.00087 * 13 12 10 39 39 H 1.09004 * 109.46923 * 59.99390 * 13 12 10 40 40 H 1.08992 * 109.47280 * 59.99807 * 15 14 13 41 41 H 1.09002 * 109.46777 * 180.02562 * 15 14 13 42 42 H 1.09000 * 109.47140 * 299.99954 * 15 14 13 43 43 H 1.09004 * 109.47261 * 59.99694 * 16 14 13 44 44 H 1.09002 * 109.47153 * 179.97438 * 16 14 13 45 45 H 1.09001 * 109.46832 * 299.99675 * 16 14 13 46 46 H 1.09004 * 109.46930 * 300.00004 * 17 14 13 47 47 H 1.09000 * 109.47312 * 60.00061 * 17 14 13 48 48 H 0.96996 * 120.00393 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 3.5700 -0.7218 -1.2487 6 6 4.0795 -1.4433 0.0006 7 6 3.5694 -0.7219 1.2497 8 6 2.0395 -0.7214 1.2494 9 1 1.6761 -0.2079 2.1395 10 6 1.5367 -2.1421 1.2492 11 8 0.8394 -2.5385 0.3395 12 7 1.8617 -2.9721 2.2601 13 6 1.3725 -4.3530 2.2602 14 6 1.8826 -5.0746 3.5092 15 6 3.4126 -5.0756 3.5086 16 6 1.3736 -4.3531 4.7587 17 6 1.3722 -6.5170 3.5090 18 6 1.8740 -7.2276 4.7395 19 1 2.4946 -6.7029 5.4508 20 6 1.5401 -8.5474 4.9578 21 7 1.9785 -9.1677 6.0314 22 14 0.4661 -9.4548 3.7279 23 1 1.3247 -10.1002 2.7025 24 1 -0.3267 -10.4930 4.4343 25 1 -0.4535 -8.4927 3.0693 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5137 -0.8901 29 1 1.6767 -0.2076 -2.1392 30 1 1.6767 -1.7490 -1.2490 31 1 3.9334 -1.2354 -2.1389 32 1 3.9337 0.3057 -1.2486 33 1 3.7158 -2.4708 0.0005 34 1 5.1695 -1.4441 0.0006 35 1 3.9328 -1.2356 2.1398 36 1 3.9331 0.3056 1.2498 37 1 2.4196 -2.6552 2.9875 38 1 0.2825 -4.3523 2.2602 39 1 1.7354 -4.8671 1.3702 40 1 3.7765 -4.0482 3.5084 41 1 3.7759 -5.5901 4.3982 42 1 3.7752 -5.5896 2.6184 43 1 0.2835 -4.3524 4.7591 44 1 1.7366 -4.8675 5.6485 45 1 1.7376 -3.3257 4.7586 46 1 0.2821 -6.5166 3.5093 47 1 1.7352 -7.0308 2.6189 48 1 1.7439 -10.0963 6.1849 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424855546.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:33 Heat of formation + Delta-G solvation = -79.135962 kcal Electronic energy + Delta-G solvation = -23630.667219 eV Core-core repulsion = 20490.827422 eV Total energy + Delta-G solvation = -3139.839797 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 3.04 seconds Orbital eigenvalues (eV) -40.71012 -38.00533 -36.64904 -33.87210 -32.53492 -32.16682 -31.00100 -27.85157 -26.87877 -26.56805 -25.94582 -23.52395 -22.35563 -21.39767 -20.87622 -19.59950 -17.98325 -16.89824 -16.45976 -15.85454 -15.51012 -15.07686 -14.45759 -14.25752 -14.17049 -13.77263 -13.57903 -13.47023 -13.25254 -12.74511 -12.59769 -12.40821 -12.28218 -12.18051 -12.06490 -11.58407 -11.49524 -11.23993 -11.12307 -11.01389 -10.97612 -10.72853 -10.61682 -10.49316 -10.21111 -10.15543 -9.97049 -9.76711 -9.62571 -9.15839 -8.99313 -8.71834 -8.54223 -6.05009 -4.02291 2.81306 3.30912 3.38915 3.43025 3.43266 4.45022 4.45691 4.58856 4.60533 4.95219 5.03402 5.12797 5.25954 5.27659 5.31107 5.37383 5.40217 5.45993 5.53013 5.61614 5.64803 5.70687 5.77580 5.86121 5.88395 6.04133 6.10182 6.10851 6.11882 6.14905 6.18759 6.22751 6.31268 6.41734 6.44786 6.58493 6.59367 6.77756 6.91833 7.00558 7.04353 7.19598 7.36090 7.71371 7.80367 8.45116 8.52459 8.99010 9.57806 11.07746 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.028433 B = 0.003841 C = 0.003744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 984.548981 B = 7288.273286 C = 7477.425087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.065 4.065 3 H 0.068 0.932 4 C -0.130 4.130 5 C -0.118 4.118 6 C -0.123 4.123 7 C -0.110 4.110 8 C -0.106 4.106 9 H 0.092 0.908 10 C 0.516 3.484 11 O -0.538 6.538 12 N -0.721 5.721 13 C 0.126 3.874 14 C -0.063 4.063 15 C -0.128 4.128 16 C -0.128 4.128 17 C -0.002 4.002 18 C -0.511 4.511 19 H 0.078 0.922 20 C 0.067 3.933 21 N -0.904 5.904 22 Si 0.874 3.126 23 H -0.278 1.278 24 H -0.289 1.289 25 H -0.265 1.265 26 H 0.086 0.914 27 H 0.044 0.956 28 H 0.048 0.952 29 H 0.055 0.945 30 H 0.094 0.906 31 H 0.058 0.942 32 H 0.056 0.944 33 H 0.064 0.936 34 H 0.063 0.937 35 H 0.067 0.933 36 H 0.071 0.929 37 H 0.398 0.602 38 H 0.062 0.938 39 H 0.062 0.938 40 H 0.031 0.969 41 H 0.072 0.928 42 H 0.046 0.954 43 H 0.046 0.954 44 H 0.072 0.928 45 H 0.031 0.969 46 H 0.018 0.982 47 H 0.013 0.987 48 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.486 19.520 -10.366 22.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.084 4.084 3 H 0.086 0.914 4 C -0.167 4.167 5 C -0.155 4.155 6 C -0.161 4.161 7 C -0.147 4.147 8 C -0.128 4.128 9 H 0.111 0.889 10 C 0.303 3.697 11 O -0.416 6.416 12 N -0.373 5.373 13 C 0.003 3.997 14 C -0.063 4.063 15 C -0.185 4.185 16 C -0.186 4.186 17 C -0.040 4.040 18 C -0.549 4.549 19 H 0.096 0.904 20 C -0.134 4.134 21 N -0.543 5.543 22 Si 0.702 3.298 23 H -0.204 1.204 24 H -0.215 1.215 25 H -0.190 1.190 26 H 0.104 0.896 27 H 0.063 0.937 28 H 0.067 0.933 29 H 0.073 0.927 30 H 0.112 0.888 31 H 0.077 0.923 32 H 0.075 0.925 33 H 0.083 0.917 34 H 0.081 0.919 35 H 0.085 0.915 36 H 0.090 0.910 37 H 0.233 0.767 38 H 0.080 0.920 39 H 0.080 0.920 40 H 0.050 0.950 41 H 0.091 0.909 42 H 0.065 0.935 43 H 0.066 0.934 44 H 0.091 0.909 45 H 0.050 0.950 46 H 0.036 0.964 47 H 0.031 0.969 48 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 1.974 19.042 -10.916 22.038 hybrid contribution -0.273 -0.477 -0.142 0.568 sum 1.701 18.565 -11.058 21.675 Atomic orbital electron populations 1.22093 0.94905 1.04354 1.00516 1.20841 0.96057 0.97973 0.93494 0.91386 1.21864 0.94649 1.03638 0.96532 1.21528 0.96392 1.00040 0.97563 1.21563 1.00198 0.99868 0.94442 1.21525 0.92983 1.01549 0.98688 1.21429 0.96939 0.93762 1.00648 0.88946 1.20493 0.80029 0.87398 0.81781 1.90546 1.38222 1.77257 1.35586 1.46230 1.53207 1.12958 1.24885 1.21600 0.98761 0.80197 0.99123 1.20681 0.95783 0.97398 0.92469 1.21768 0.94837 0.98984 1.02949 1.21769 1.00424 0.97414 0.98951 1.19586 0.96248 0.90349 0.97769 1.21081 1.31834 0.96064 1.05914 0.90413 1.24994 0.95690 0.97577 0.95132 1.69898 1.45934 1.11589 1.26888 0.86864 0.81347 0.79829 0.81767 1.20373 1.21494 1.19006 0.89580 0.93673 0.93264 0.92656 0.88761 0.92283 0.92500 0.91722 0.91871 0.91467 0.90989 0.76675 0.91975 0.91999 0.95030 0.90926 0.93459 0.93442 0.90909 0.95033 0.96421 0.96866 0.92792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.78 8.89 37.15 0.33 -1.45 16 2 C -0.06 -0.66 2.47 -90.62 -0.22 -0.89 16 3 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 4 C -0.13 -1.42 4.93 -26.73 -0.13 -1.55 16 5 C -0.12 -1.13 5.92 -26.73 -0.16 -1.28 16 6 C -0.12 -1.22 5.70 -26.73 -0.15 -1.37 16 7 C -0.11 -0.96 5.36 -26.73 -0.14 -1.11 16 8 C -0.11 -1.08 2.55 -91.77 -0.23 -1.32 16 9 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 10 C 0.52 6.94 5.35 -10.99 -0.06 6.89 16 11 O -0.54 -8.85 11.35 5.56 0.06 -8.79 16 12 N -0.72 -9.66 4.85 -60.30 -0.29 -9.96 16 13 C 0.13 2.07 4.56 -4.04 -0.02 2.05 16 14 C -0.06 -1.13 0.54 -154.51 -0.08 -1.22 16 15 C -0.13 -2.18 8.05 37.16 0.30 -1.88 16 16 C -0.13 -2.19 8.05 37.16 0.30 -1.89 16 17 C 0.00 -0.04 3.11 -27.88 -0.09 -0.13 16 18 C -0.51 -13.61 8.20 -34.44 -0.28 -13.89 16 19 H 0.08 2.19 5.92 -52.49 -0.31 1.88 16 20 C 0.07 1.89 5.47 -17.82 -0.10 1.79 16 21 N -0.90 -27.15 13.96 55.43 0.77 -26.38 16 22 Si 0.87 21.48 27.47 -169.99 -4.67 16.81 16 23 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 24 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 25 H -0.27 -6.32 6.54 56.52 0.37 -5.95 16 26 H 0.09 1.18 5.51 -51.93 -0.29 0.90 16 27 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.09 1.31 5.51 -51.93 -0.29 1.02 16 31 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 33 H 0.06 0.78 7.22 -51.93 -0.37 0.41 16 34 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 35 H 0.07 0.56 7.57 -51.93 -0.39 0.16 16 36 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.40 4.61 5.58 -40.82 -0.23 4.38 16 38 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 39 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 40 H 0.03 0.43 6.86 -51.93 -0.36 0.08 16 41 H 0.07 1.40 6.62 -51.93 -0.34 1.05 16 42 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 43 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 44 H 0.07 1.40 6.62 -51.93 -0.34 1.06 16 45 H 0.03 0.44 6.86 -51.93 -0.36 0.08 16 46 H 0.02 0.41 7.20 -51.93 -0.37 0.04 16 47 H 0.01 0.30 7.57 -51.93 -0.39 -0.09 16 48 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 LS Contribution 350.71 15.07 5.29 5.29 Total: -1.00 -29.58 350.71 -8.29 -37.87 By element: Atomic # 1 Polarization: 11.11 SS G_CDS: -8.71 Total: 2.40 kcal Atomic # 6 Polarization: -16.50 SS G_CDS: -0.74 Total: -17.24 kcal Atomic # 7 Polarization: -36.82 SS G_CDS: 0.48 Total: -36.33 kcal Atomic # 8 Polarization: -8.85 SS G_CDS: 0.06 Total: -8.79 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -4.67 Total: 16.81 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -29.58 -8.29 -37.87 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424855546.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.265 kcal (2) G-P(sol) polarization free energy of solvation -29.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.871 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.04 seconds