Wall clock time and date at job start Tue Mar 31 2020 05:21:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08996 * 109.47462 * 2 1 4 4 C 1.53005 * 109.47431 * 120.00332 * 2 1 3 5 5 C 1.52990 * 109.47213 * 179.97438 * 4 2 1 6 6 C 1.52996 * 109.47429 * 299.99597 * 5 4 2 7 7 C 1.53004 * 109.46906 * 59.99806 * 6 5 4 8 8 C 1.52998 * 109.47453 * 300.00309 * 7 6 5 9 9 H 1.08998 * 109.47126 * 179.97438 * 8 7 6 10 10 C 1.50700 * 109.47092 * 300.00030 * 8 7 6 11 11 O 1.21283 * 119.99803 * 119.99700 * 10 8 7 12 12 N 1.34777 * 119.99675 * 300.27576 * 10 8 7 13 13 C 1.46497 * 119.99525 * 179.72583 * 12 10 8 14 14 C 1.52999 * 109.46992 * 179.97438 * 13 12 10 15 15 C 1.53006 * 109.47258 * 300.00045 * 14 13 12 16 16 C 1.52995 * 109.47338 * 60.00083 * 14 13 12 17 17 C 1.52998 * 109.47306 * 180.02562 * 14 13 12 18 18 C 1.50698 * 109.47245 * 180.02562 * 17 14 13 19 19 H 1.08001 * 120.00092 * 359.97438 * 18 17 14 20 20 C 1.37882 * 120.00154 * 180.02562 * 18 17 14 21 21 N 1.31511 * 119.99696 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 119.99906 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.47349 * 90.00122 * 22 20 18 24 24 H 1.48500 * 109.46994 * 209.99450 * 22 20 18 25 25 H 1.48495 * 109.47601 * 329.99645 * 22 20 18 26 26 H 1.09005 * 109.46870 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.46783 * 299.99698 * 1 2 3 28 28 H 1.08998 * 109.47156 * 60.00100 * 1 2 3 29 29 H 1.08996 * 109.47069 * 59.99427 * 4 2 1 30 30 H 1.09004 * 109.46658 * 300.00048 * 4 2 1 31 31 H 1.09006 * 109.47240 * 179.97438 * 5 4 2 32 32 H 1.09005 * 109.47428 * 59.99981 * 5 4 2 33 33 H 1.09005 * 109.47129 * 300.00567 * 6 5 4 34 34 H 1.09000 * 109.47764 * 180.02562 * 6 5 4 35 35 H 1.09004 * 109.46970 * 180.02562 * 7 6 5 36 36 H 1.09005 * 109.46605 * 60.00440 * 7 6 5 37 37 H 0.97000 * 119.99894 * 359.71837 * 12 10 8 38 38 H 1.08995 * 109.47421 * 299.99467 * 13 12 10 39 39 H 1.09001 * 109.47621 * 60.00103 * 13 12 10 40 40 H 1.08998 * 109.46912 * 59.99446 * 15 14 13 41 41 H 1.08994 * 109.47328 * 180.02562 * 15 14 13 42 42 H 1.09007 * 109.46697 * 300.00044 * 15 14 13 43 43 H 1.09003 * 109.47465 * 59.99650 * 16 14 13 44 44 H 1.09001 * 109.47749 * 180.02562 * 16 14 13 45 45 H 1.09003 * 109.46864 * 300.00020 * 16 14 13 46 46 H 1.08995 * 109.47215 * 299.99822 * 17 14 13 47 47 H 1.09001 * 109.47513 * 60.00266 * 17 14 13 48 48 H 0.97008 * 120.00088 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 3.5700 -0.7219 1.2488 6 6 4.0795 -1.4435 -0.0004 7 6 3.5694 -0.7222 -1.2496 8 6 2.0394 -0.7217 -1.2493 9 1 1.6761 -0.2074 -2.1390 10 6 1.5366 -2.1423 -1.2489 11 8 0.8394 -2.5385 -0.3391 12 7 1.8663 -2.9740 -2.2569 13 6 1.3824 -4.3568 -2.2535 14 6 1.8959 -5.0798 -3.5002 15 6 1.3848 -4.3637 -4.7520 16 6 3.4258 -5.0750 -3.4988 17 6 1.3901 -6.5238 -3.4971 18 6 1.8964 -7.2361 -4.7247 19 1 2.5166 -6.7114 -5.4363 20 6 1.5670 -8.5576 -4.9401 21 7 0.8114 -9.1965 -4.0738 22 14 2.1940 -9.4404 -6.4622 23 1 3.5034 -10.0738 -6.1630 24 1 1.2192 -10.4856 -6.8650 25 1 2.3580 -8.4637 -7.5687 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8901 28 1 -0.3633 0.5138 -0.8900 29 1 1.6767 -1.7489 1.2492 30 1 1.6767 -0.2075 2.1392 31 1 3.9334 -1.2354 2.1391 32 1 3.9337 0.3057 1.2487 33 1 3.7157 -2.4710 -0.0002 34 1 5.1695 -1.4443 -0.0004 35 1 3.9320 -1.2366 -2.1396 36 1 3.9332 0.3053 -1.2498 37 1 2.4238 -2.6570 -2.9846 38 1 1.7462 -4.8668 -1.3616 39 1 0.2924 -4.3604 -2.2550 40 1 1.7447 -3.3349 -4.7545 41 1 1.7502 -4.8791 -5.6402 42 1 0.2947 -4.3673 -4.7530 43 1 3.7900 -5.5851 -2.6070 44 1 3.7918 -5.5897 -4.3872 45 1 3.7859 -4.0461 -3.5013 46 1 1.7538 -7.0342 -2.6054 47 1 0.3000 -6.5270 -3.4984 48 1 0.5799 -10.1263 -4.2251 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424855547.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:42 Heat of formation + Delta-G solvation = -82.574166 kcal Electronic energy + Delta-G solvation = -23577.309670 eV Core-core repulsion = 20437.320781 eV Total energy + Delta-G solvation = -3139.988889 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.64957 -37.90460 -36.55971 -33.81224 -32.51231 -32.15054 -30.92903 -27.20714 -26.76744 -26.51848 -25.89153 -23.57670 -22.62179 -21.36450 -20.87320 -19.53503 -17.99901 -16.43303 -16.35856 -15.79745 -15.37349 -15.02283 -14.55104 -14.33857 -14.11264 -13.83361 -13.49090 -13.25618 -13.05410 -12.79612 -12.50100 -12.32655 -12.10725 -12.06038 -12.01093 -11.54078 -11.44872 -11.13598 -11.02163 -10.93384 -10.85566 -10.69130 -10.62239 -10.40622 -10.25974 -10.16933 -10.11151 -9.87251 -9.37397 -9.04535 -8.90804 -8.62935 -8.36502 -6.00526 -4.01844 2.88175 3.30278 3.37371 3.38866 3.51011 4.44547 4.49806 4.63363 4.64603 4.99662 5.07399 5.17837 5.29900 5.34735 5.35225 5.41372 5.47888 5.53330 5.62910 5.66730 5.74461 5.75306 5.81207 5.90000 5.92069 6.08307 6.14571 6.16800 6.18762 6.23189 6.25620 6.30084 6.39463 6.47157 6.51554 6.62290 6.66825 6.85435 7.06274 7.06798 7.13355 7.63491 7.75951 7.81717 7.98251 8.39923 8.53265 9.03002 9.61339 11.10933 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.032632 B = 0.003584 C = 0.003502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 857.853155 B = 7811.120346 C = 7993.943383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.065 4.065 3 H 0.067 0.933 4 C -0.130 4.130 5 C -0.117 4.117 6 C -0.123 4.123 7 C -0.109 4.109 8 C -0.107 4.107 9 H 0.092 0.908 10 C 0.516 3.484 11 O -0.537 6.537 12 N -0.722 5.722 13 C 0.129 3.871 14 C -0.072 4.072 15 C -0.127 4.127 16 C -0.126 4.126 17 C 0.036 3.964 18 C -0.511 4.511 19 H 0.059 0.941 20 C 0.056 3.944 21 N -0.894 5.894 22 Si 0.888 3.112 23 H -0.282 1.282 24 H -0.287 1.287 25 H -0.274 1.274 26 H 0.086 0.914 27 H 0.048 0.952 28 H 0.044 0.956 29 H 0.095 0.905 30 H 0.055 0.945 31 H 0.058 0.942 32 H 0.056 0.944 33 H 0.065 0.935 34 H 0.062 0.938 35 H 0.066 0.934 36 H 0.071 0.929 37 H 0.396 0.604 38 H 0.062 0.938 39 H 0.062 0.938 40 H 0.028 0.972 41 H 0.066 0.934 42 H 0.047 0.953 43 H 0.047 0.953 44 H 0.066 0.934 45 H 0.028 0.972 46 H 0.018 0.982 47 H 0.018 0.982 48 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.052 19.287 5.936 20.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.083 4.083 3 H 0.086 0.914 4 C -0.167 4.167 5 C -0.155 4.155 6 C -0.161 4.161 7 C -0.147 4.147 8 C -0.128 4.128 9 H 0.110 0.890 10 C 0.302 3.698 11 O -0.415 6.415 12 N -0.373 5.373 13 C 0.006 3.994 14 C -0.073 4.073 15 C -0.184 4.184 16 C -0.183 4.183 17 C -0.001 4.001 18 C -0.550 4.550 19 H 0.077 0.923 20 C -0.145 4.145 21 N -0.534 5.534 22 Si 0.717 3.283 23 H -0.208 1.208 24 H -0.213 1.213 25 H -0.199 1.199 26 H 0.105 0.895 27 H 0.067 0.933 28 H 0.063 0.937 29 H 0.113 0.887 30 H 0.073 0.927 31 H 0.077 0.923 32 H 0.075 0.925 33 H 0.083 0.917 34 H 0.081 0.919 35 H 0.085 0.915 36 H 0.090 0.910 37 H 0.232 0.768 38 H 0.080 0.920 39 H 0.080 0.920 40 H 0.047 0.953 41 H 0.085 0.915 42 H 0.066 0.934 43 H 0.066 0.934 44 H 0.085 0.915 45 H 0.047 0.953 46 H 0.036 0.964 47 H 0.036 0.964 48 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 4.460 18.809 6.613 20.430 hybrid contribution 0.577 -0.444 -1.250 1.447 sum 5.036 18.364 5.363 19.783 Atomic orbital electron populations 1.22097 0.94896 1.04411 1.00473 1.20840 0.96070 0.97917 0.93518 0.91450 1.21863 0.94619 1.03689 0.96512 1.21525 0.96424 0.99988 0.97565 1.21565 1.00144 0.99936 0.94440 1.21522 0.93042 1.01466 0.98671 1.21431 0.96891 0.93894 1.00605 0.89025 1.20473 0.80102 0.87366 0.81856 1.90549 1.38208 1.77283 1.35481 1.46264 1.53178 1.12924 1.24937 1.21588 0.98840 0.79767 0.99233 1.20895 0.95403 0.98811 0.92170 1.21759 1.00521 0.97209 0.98912 1.21752 0.95334 0.98664 1.02595 1.19083 0.96337 0.87270 0.97426 1.21186 1.31170 0.95765 1.06849 0.92282 1.25011 0.95290 0.97736 0.96430 1.69965 1.36975 1.10769 1.35674 0.86654 0.78588 0.79583 0.83521 1.20775 1.21333 1.19945 0.89514 0.93283 0.93701 0.88709 0.92668 0.92277 0.92547 0.91658 0.91920 0.91527 0.91049 0.76840 0.91972 0.91968 0.95288 0.91469 0.93407 0.93409 0.91500 0.95281 0.96400 0.96389 0.93039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.85 8.89 37.16 0.33 -1.52 16 2 C -0.06 -0.69 2.47 -90.62 -0.22 -0.91 16 3 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 4 C -0.13 -1.47 4.93 -26.73 -0.13 -1.61 16 5 C -0.12 -1.17 5.92 -26.74 -0.16 -1.32 16 6 C -0.12 -1.26 5.70 -26.73 -0.15 -1.42 16 7 C -0.11 -1.00 5.35 -26.73 -0.14 -1.14 16 8 C -0.11 -1.13 2.55 -91.77 -0.23 -1.37 16 9 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 10 C 0.52 7.23 5.35 -10.98 -0.06 7.17 16 11 O -0.54 -9.20 11.34 5.55 0.06 -9.14 16 12 N -0.72 -10.13 4.85 -60.30 -0.29 -10.42 16 13 C 0.13 2.24 4.56 -4.04 -0.02 2.22 16 14 C -0.07 -1.36 0.54 -154.51 -0.08 -1.44 16 15 C -0.13 -2.20 8.05 37.16 0.30 -1.90 16 16 C -0.13 -2.18 8.05 37.15 0.30 -1.88 16 17 C 0.04 0.89 4.04 -27.88 -0.11 0.77 16 18 C -0.51 -13.52 7.65 -34.44 -0.26 -13.78 16 19 H 0.06 1.50 5.68 -52.49 -0.30 1.20 16 20 C 0.06 1.56 5.46 -17.82 -0.10 1.47 16 21 N -0.89 -26.37 13.29 55.43 0.74 -25.64 16 22 Si 0.89 21.12 29.54 -169.99 -5.02 16.10 16 23 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 24 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 25 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 26 H 0.09 1.23 5.51 -51.93 -0.29 0.95 16 27 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.09 1.36 5.51 -51.93 -0.29 1.08 16 30 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 32 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.06 0.82 7.22 -51.93 -0.37 0.45 16 34 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.07 0.57 7.55 -51.93 -0.39 0.18 16 36 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 37 H 0.40 4.80 5.57 -40.82 -0.23 4.57 16 38 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 39 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 40 H 0.03 0.41 6.86 -51.93 -0.36 0.05 16 41 H 0.07 1.26 6.62 -51.93 -0.34 0.92 16 42 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 43 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 44 H 0.07 1.25 6.62 -51.93 -0.34 0.90 16 45 H 0.03 0.40 6.86 -51.93 -0.36 0.05 16 46 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 47 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 48 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 LS Contribution 354.29 15.07 5.34 5.34 Total: -1.00 -29.27 354.29 -8.66 -37.93 By element: Atomic # 1 Polarization: 11.22 SS G_CDS: -8.74 Total: 2.48 kcal Atomic # 6 Polarization: -15.91 SS G_CDS: -0.75 Total: -16.65 kcal Atomic # 7 Polarization: -36.50 SS G_CDS: 0.44 Total: -36.06 kcal Atomic # 8 Polarization: -9.20 SS G_CDS: 0.06 Total: -9.14 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -29.27 -8.66 -37.93 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424855547.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.641 kcal (2) G-P(sol) polarization free energy of solvation -29.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.933 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds