Wall clock time and date at job start Tue Mar 31 2020 05:21:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08996 * 109.47847 * 2 1 4 4 C 1.53000 * 109.46638 * 120.00405 * 2 1 3 5 5 C 1.53003 * 109.47009 * 180.02562 * 4 2 1 6 6 C 1.53001 * 109.46978 * 299.99536 * 5 4 2 7 7 C 1.53001 * 109.47132 * 59.99891 * 6 5 4 8 8 C 1.52996 * 109.47353 * 300.00409 * 7 6 5 9 9 H 1.09007 * 109.46860 * 300.00114 * 8 7 6 10 10 C 1.50692 * 109.47290 * 179.97438 * 8 7 6 11 11 O 1.21282 * 120.00217 * 239.99645 * 10 8 7 12 12 N 1.34777 * 120.00138 * 59.99948 * 10 8 7 13 13 C 1.46498 * 120.00346 * 179.97438 * 12 10 8 14 14 C 1.53001 * 109.47311 * 179.97438 * 13 12 10 15 15 C 1.52994 * 109.46984 * 60.00251 * 14 13 12 16 16 C 1.53003 * 109.46978 * 300.00069 * 14 13 12 17 17 C 1.53000 * 109.46872 * 180.02562 * 14 13 12 18 18 C 1.50708 * 109.46973 * 180.02562 * 17 14 13 19 19 H 1.07991 * 119.99789 * 0.02562 * 18 17 14 20 20 C 1.37877 * 120.00008 * 179.97438 * 18 17 14 21 21 N 1.31514 * 120.00089 * 180.02562 * 20 18 17 22 22 Si 1.86798 * 119.99938 * 0.02562 * 20 18 17 23 23 H 1.48506 * 109.47297 * 269.99556 * 22 20 18 24 24 H 1.48503 * 109.47261 * 149.99737 * 22 20 18 25 25 H 1.48500 * 109.47454 * 29.99730 * 22 20 18 26 26 H 1.08990 * 109.47422 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.46827 * 300.00224 * 1 2 3 28 28 H 1.09001 * 109.46373 * 59.99520 * 1 2 3 29 29 H 1.08998 * 109.46998 * 299.99266 * 4 2 1 30 30 H 1.08994 * 109.48028 * 59.99521 * 4 2 1 31 31 H 1.08996 * 109.47696 * 59.99460 * 5 4 2 32 32 H 1.09003 * 109.47241 * 179.97438 * 5 4 2 33 33 H 1.09000 * 109.47186 * 180.02562 * 6 5 4 34 34 H 1.09007 * 109.46821 * 299.99936 * 6 5 4 35 35 H 1.09000 * 109.47113 * 179.97438 * 7 6 5 36 36 H 1.09004 * 109.46757 * 60.00152 * 7 6 5 37 37 H 0.97000 * 120.00165 * 359.97438 * 12 10 8 38 38 H 1.09007 * 109.47173 * 59.99932 * 13 12 10 39 39 H 1.09000 * 109.47353 * 300.00047 * 13 12 10 40 40 H 1.08998 * 109.47229 * 179.97438 * 15 14 13 41 41 H 1.09003 * 109.47307 * 299.99648 * 15 14 13 42 42 H 1.09000 * 109.47006 * 60.00077 * 15 14 13 43 43 H 1.09001 * 109.46867 * 299.99636 * 16 14 13 44 44 H 1.08993 * 109.47365 * 60.00455 * 16 14 13 45 45 H 1.08998 * 109.46607 * 179.97438 * 16 14 13 46 46 H 1.08994 * 109.48028 * 60.00123 * 17 14 13 47 47 H 1.09000 * 109.47206 * 299.99977 * 17 14 13 48 48 H 0.96997 * 119.99848 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0399 -0.7214 1.2492 5 6 3.5699 -0.7209 1.2496 6 6 4.0805 -1.4418 0.0004 7 6 3.5705 -0.7205 -1.2489 8 6 2.0406 -0.7209 -1.2492 9 1 1.6775 -1.7488 -1.2494 10 6 1.5383 -0.0100 -2.4793 11 8 0.8407 0.9758 -2.3677 12 7 1.8643 -0.4697 -3.7036 13 6 1.3756 0.2211 -4.8995 14 6 1.8867 -0.4989 -6.1491 15 6 1.3782 -1.9418 -6.1501 16 6 3.4167 -0.4973 -6.1486 17 6 1.3768 0.2230 -7.3980 18 6 1.8797 -0.4865 -8.6288 19 1 2.5005 -1.3647 -8.5301 20 6 1.5464 -0.0151 -9.8809 21 7 1.9848 -0.6346 -10.9550 22 14 0.4720 1.5034 -10.0516 23 1 -0.9557 1.0972 -10.0971 24 1 0.8229 2.2198 -11.3042 25 1 0.6945 2.4005 -8.8893 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3632 0.5139 -0.8900 29 1 1.6766 -0.2075 2.1392 30 1 1.6766 -1.7490 1.2493 31 1 3.9330 0.3069 1.2499 32 1 3.9332 -1.2344 2.1398 33 1 5.1705 -1.4418 0.0009 34 1 3.7174 -2.4696 0.0002 35 1 3.9346 -1.2338 -2.1388 36 1 3.9336 0.3073 -1.2486 37 1 2.4225 -1.2579 -3.7930 38 1 1.7382 1.2491 -4.8991 39 1 0.2856 0.2204 -4.8997 40 1 1.7419 -2.4546 -7.0405 41 1 1.7418 -2.4559 -5.2603 42 1 0.2882 -1.9429 -6.1504 43 1 3.7789 0.5308 -6.1479 44 1 3.7804 -1.0113 -5.2589 45 1 3.7808 -1.0106 -7.0386 46 1 1.7393 1.2509 -7.3972 47 1 0.2868 0.2223 -7.3985 48 1 1.7506 -0.3027 -11.8358 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424855549.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:45 Heat of formation + Delta-G solvation = -85.112046 kcal Electronic energy + Delta-G solvation = -23190.276665 eV Core-core repulsion = 20050.177726 eV Total energy + Delta-G solvation = -3140.098939 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 2.59 seconds Orbital eigenvalues (eV) -40.41834 -38.19887 -36.96601 -33.80353 -32.57147 -32.17051 -31.14646 -27.86850 -26.96961 -26.56807 -25.90074 -23.63268 -22.37447 -21.43182 -20.41967 -19.78695 -18.26177 -17.06164 -16.68906 -15.76611 -15.30532 -14.78193 -14.65085 -14.39646 -14.28332 -14.01115 -13.88099 -13.47027 -13.07760 -12.79819 -12.63863 -12.47590 -12.27571 -12.22738 -11.96404 -11.63594 -11.40579 -11.23777 -11.12441 -11.07039 -11.01325 -10.74588 -10.63672 -10.60173 -10.49560 -10.28939 -9.97458 -9.76921 -9.66597 -9.25179 -8.99519 -8.74432 -8.54091 -6.04910 -4.02163 2.79442 3.31140 3.39019 3.41428 3.43389 4.39689 4.45216 4.47445 4.52944 4.89513 4.94982 5.07067 5.18101 5.18665 5.27354 5.27855 5.31601 5.41599 5.52765 5.57728 5.58541 5.63887 5.75052 5.79088 5.85175 5.86400 5.94185 6.02827 6.08441 6.10688 6.11915 6.20011 6.30594 6.31809 6.39384 6.53927 6.58650 6.73687 6.90987 7.00624 7.04363 7.19804 7.36259 7.70404 7.80050 8.42640 8.52499 8.99146 9.57919 11.07854 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.032313 B = 0.003505 C = 0.003306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 866.323282 B = 7986.621263 C = 8467.390542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.068 4.068 3 H 0.075 0.925 4 C -0.115 4.115 5 C -0.122 4.122 6 C -0.117 4.117 7 C -0.112 4.112 8 C -0.102 4.102 9 H 0.094 0.906 10 C 0.511 3.489 11 O -0.542 6.542 12 N -0.721 5.721 13 C 0.125 3.875 14 C -0.063 4.063 15 C -0.129 4.129 16 C -0.128 4.128 17 C -0.002 4.002 18 C -0.511 4.511 19 H 0.078 0.922 20 C 0.067 3.933 21 N -0.904 5.904 22 Si 0.875 3.125 23 H -0.278 1.278 24 H -0.289 1.289 25 H -0.265 1.265 26 H 0.045 0.955 27 H 0.048 0.952 28 H 0.085 0.915 29 H 0.063 0.937 30 H 0.061 0.939 31 H 0.062 0.938 32 H 0.061 0.939 33 H 0.064 0.936 34 H 0.063 0.937 35 H 0.068 0.932 36 H 0.068 0.932 37 H 0.398 0.602 38 H 0.062 0.938 39 H 0.062 0.938 40 H 0.072 0.928 41 H 0.031 0.969 42 H 0.046 0.954 43 H 0.047 0.953 44 H 0.031 0.969 45 H 0.072 0.928 46 H 0.018 0.982 47 H 0.013 0.987 48 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.668 -2.516 23.265 23.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.087 4.087 3 H 0.093 0.907 4 C -0.152 4.152 5 C -0.159 4.159 6 C -0.155 4.155 7 C -0.149 4.149 8 C -0.124 4.124 9 H 0.112 0.888 10 C 0.298 3.702 11 O -0.420 6.420 12 N -0.372 5.372 13 C 0.002 3.998 14 C -0.064 4.064 15 C -0.186 4.186 16 C -0.185 4.185 17 C -0.040 4.040 18 C -0.549 4.549 19 H 0.096 0.904 20 C -0.134 4.134 21 N -0.543 5.543 22 Si 0.702 3.298 23 H -0.204 1.204 24 H -0.215 1.215 25 H -0.190 1.190 26 H 0.064 0.936 27 H 0.068 0.932 28 H 0.103 0.897 29 H 0.082 0.918 30 H 0.080 0.920 31 H 0.081 0.919 32 H 0.079 0.921 33 H 0.083 0.917 34 H 0.082 0.918 35 H 0.087 0.913 36 H 0.087 0.913 37 H 0.234 0.766 38 H 0.081 0.919 39 H 0.080 0.920 40 H 0.091 0.909 41 H 0.050 0.950 42 H 0.066 0.934 43 H 0.066 0.934 44 H 0.050 0.950 45 H 0.091 0.909 46 H 0.036 0.964 47 H 0.031 0.969 48 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 2.159 -1.795 23.126 23.296 hybrid contribution -0.342 0.393 -0.396 0.655 sum 1.817 -1.402 22.729 22.845 Atomic orbital electron populations 1.22070 0.94749 1.01390 1.03461 1.20876 0.96210 0.99437 0.92181 0.90680 1.21632 0.95306 1.00689 0.97600 1.21566 0.95839 1.00855 0.97671 1.21525 1.00367 0.99375 0.94213 1.21535 0.93062 1.01752 0.98593 1.21401 0.96833 1.00753 0.93388 0.88832 1.20604 0.80243 0.84710 0.84679 1.90616 1.38107 1.26616 1.86663 1.46218 1.53168 1.32010 1.05846 1.21617 0.98790 0.96016 0.83344 1.20686 0.95822 0.95868 0.93976 1.21772 1.00431 0.95634 1.00740 1.21766 0.94808 1.01221 1.00730 1.19588 0.95891 0.95843 0.92644 1.21082 1.31885 1.13285 0.88628 0.90402 1.24997 0.95750 0.96699 0.95982 1.69900 1.45981 1.40558 0.97882 0.86860 0.81181 0.84084 0.77652 1.20373 1.21496 1.18999 0.93625 0.93246 0.89668 0.91841 0.91985 0.91941 0.92069 0.91687 0.91779 0.91344 0.91334 0.76616 0.91946 0.91954 0.90894 0.95033 0.93440 0.93428 0.95038 0.90904 0.96393 0.96856 0.92793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.77 8.87 37.16 0.33 -1.44 16 2 C -0.07 -0.70 1.89 -90.62 -0.17 -0.87 16 3 H 0.07 0.88 8.10 -51.93 -0.42 0.46 16 4 C -0.11 -0.91 5.20 -26.73 -0.14 -1.05 16 5 C -0.12 -0.88 5.92 -26.73 -0.16 -1.04 16 6 C -0.12 -0.85 5.92 -26.73 -0.16 -1.01 16 7 C -0.11 -0.98 5.10 -26.73 -0.14 -1.12 16 8 C -0.10 -1.05 2.06 -91.78 -0.19 -1.24 16 9 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 10 C 0.51 7.12 6.86 -10.99 -0.08 7.04 16 11 O -0.54 -9.44 13.65 5.56 0.08 -9.36 16 12 N -0.72 -9.86 4.85 -60.30 -0.29 -10.15 16 13 C 0.13 2.09 4.56 -4.04 -0.02 2.07 16 14 C -0.06 -1.14 0.54 -154.51 -0.08 -1.23 16 15 C -0.13 -2.20 8.05 37.15 0.30 -1.90 16 16 C -0.13 -2.19 8.05 37.16 0.30 -1.89 16 17 C 0.00 -0.04 3.11 -27.88 -0.09 -0.13 16 18 C -0.51 -13.64 8.20 -34.44 -0.28 -13.92 16 19 H 0.08 2.19 5.92 -52.49 -0.31 1.88 16 20 C 0.07 1.88 5.47 -17.82 -0.10 1.79 16 21 N -0.90 -27.20 13.96 55.43 0.77 -26.43 16 22 Si 0.87 21.53 27.47 -169.99 -4.67 16.86 16 23 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 24 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 25 H -0.27 -6.33 6.54 56.52 0.37 -5.97 16 26 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.08 1.19 5.51 -51.93 -0.29 0.91 16 29 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 30 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.07 0.57 7.57 -51.93 -0.39 0.17 16 36 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 37 H 0.40 4.66 5.58 -40.82 -0.23 4.43 16 38 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 39 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 40 H 0.07 1.41 6.62 -51.93 -0.34 1.07 16 41 H 0.03 0.44 6.86 -51.93 -0.36 0.08 16 42 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 43 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 44 H 0.03 0.43 6.86 -51.93 -0.36 0.08 16 45 H 0.07 1.40 6.62 -51.93 -0.34 1.06 16 46 H 0.02 0.42 7.20 -51.93 -0.37 0.04 16 47 H 0.01 0.31 7.57 -51.93 -0.39 -0.09 16 48 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 LS Contribution 357.20 15.07 5.38 5.38 Total: -1.00 -30.11 357.20 -8.29 -38.40 By element: Atomic # 1 Polarization: 10.13 SS G_CDS: -8.89 Total: 1.24 kcal Atomic # 6 Polarization: -15.28 SS G_CDS: -0.67 Total: -15.94 kcal Atomic # 7 Polarization: -37.06 SS G_CDS: 0.48 Total: -36.58 kcal Atomic # 8 Polarization: -9.44 SS G_CDS: 0.08 Total: -9.36 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -4.67 Total: 16.86 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -30.11 -8.29 -38.40 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424855549.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.716 kcal (2) G-P(sol) polarization free energy of solvation -30.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.396 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.59 seconds