Wall clock time and date at job start Tue Mar 31 2020 05:21:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08996 * 109.47847 * 2 1 4 4 C 1.53000 * 109.46638 * 120.00405 * 2 1 3 5 5 C 1.53003 * 109.47009 * 180.02562 * 4 2 1 6 6 C 1.53001 * 109.46978 * 299.99536 * 5 4 2 7 7 C 1.53001 * 109.47132 * 59.99891 * 6 5 4 8 8 C 1.52996 * 109.47353 * 300.00409 * 7 6 5 9 9 H 1.09007 * 109.46860 * 300.00114 * 8 7 6 10 10 C 1.50692 * 109.47290 * 179.97438 * 8 7 6 11 11 O 1.21282 * 120.00217 * 239.99645 * 10 8 7 12 12 N 1.34777 * 120.00138 * 59.99948 * 10 8 7 13 13 C 1.46498 * 120.00346 * 179.97438 * 12 10 8 14 14 C 1.53001 * 109.47311 * 179.97438 * 13 12 10 15 15 C 1.52994 * 109.46984 * 60.00251 * 14 13 12 16 16 C 1.53003 * 109.46978 * 300.00069 * 14 13 12 17 17 C 1.53000 * 109.46872 * 180.02562 * 14 13 12 18 18 C 1.50708 * 109.46973 * 180.02562 * 17 14 13 19 19 H 1.07991 * 119.99789 * 0.02562 * 18 17 14 20 20 C 1.37877 * 120.00008 * 179.97438 * 18 17 14 21 21 N 1.31514 * 120.00089 * 180.02562 * 20 18 17 22 22 Si 1.86798 * 119.99938 * 0.02562 * 20 18 17 23 23 H 1.48506 * 109.47297 * 269.99556 * 22 20 18 24 24 H 1.48503 * 109.47261 * 149.99737 * 22 20 18 25 25 H 1.48500 * 109.47454 * 29.99730 * 22 20 18 26 26 H 1.08990 * 109.47422 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.46827 * 300.00224 * 1 2 3 28 28 H 1.09001 * 109.46373 * 59.99520 * 1 2 3 29 29 H 1.08998 * 109.46998 * 299.99266 * 4 2 1 30 30 H 1.08994 * 109.48028 * 59.99521 * 4 2 1 31 31 H 1.08996 * 109.47696 * 59.99460 * 5 4 2 32 32 H 1.09003 * 109.47241 * 179.97438 * 5 4 2 33 33 H 1.09000 * 109.47186 * 180.02562 * 6 5 4 34 34 H 1.09007 * 109.46821 * 299.99936 * 6 5 4 35 35 H 1.09000 * 109.47113 * 179.97438 * 7 6 5 36 36 H 1.09004 * 109.46757 * 60.00152 * 7 6 5 37 37 H 0.97000 * 120.00165 * 359.97438 * 12 10 8 38 38 H 1.09007 * 109.47173 * 59.99932 * 13 12 10 39 39 H 1.09000 * 109.47353 * 300.00047 * 13 12 10 40 40 H 1.08998 * 109.47229 * 179.97438 * 15 14 13 41 41 H 1.09003 * 109.47307 * 299.99648 * 15 14 13 42 42 H 1.09000 * 109.47006 * 60.00077 * 15 14 13 43 43 H 1.09001 * 109.46867 * 299.99636 * 16 14 13 44 44 H 1.08993 * 109.47365 * 60.00455 * 16 14 13 45 45 H 1.08998 * 109.46607 * 179.97438 * 16 14 13 46 46 H 1.08994 * 109.48028 * 60.00123 * 17 14 13 47 47 H 1.09000 * 109.47206 * 299.99977 * 17 14 13 48 48 H 0.96997 * 119.99848 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0399 -0.7214 1.2492 5 6 3.5699 -0.7209 1.2496 6 6 4.0805 -1.4418 0.0004 7 6 3.5705 -0.7205 -1.2489 8 6 2.0406 -0.7209 -1.2492 9 1 1.6775 -1.7488 -1.2494 10 6 1.5383 -0.0100 -2.4793 11 8 0.8407 0.9758 -2.3677 12 7 1.8643 -0.4697 -3.7036 13 6 1.3756 0.2211 -4.8995 14 6 1.8867 -0.4989 -6.1491 15 6 1.3782 -1.9418 -6.1501 16 6 3.4167 -0.4973 -6.1486 17 6 1.3768 0.2230 -7.3980 18 6 1.8797 -0.4865 -8.6288 19 1 2.5005 -1.3647 -8.5301 20 6 1.5464 -0.0151 -9.8809 21 7 1.9848 -0.6346 -10.9550 22 14 0.4720 1.5034 -10.0516 23 1 -0.9557 1.0972 -10.0971 24 1 0.8229 2.2198 -11.3042 25 1 0.6945 2.4005 -8.8893 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3632 0.5139 -0.8900 29 1 1.6766 -0.2075 2.1392 30 1 1.6766 -1.7490 1.2493 31 1 3.9330 0.3069 1.2499 32 1 3.9332 -1.2344 2.1398 33 1 5.1705 -1.4418 0.0009 34 1 3.7174 -2.4696 0.0002 35 1 3.9346 -1.2338 -2.1388 36 1 3.9336 0.3073 -1.2486 37 1 2.4225 -1.2579 -3.7930 38 1 1.7382 1.2491 -4.8991 39 1 0.2856 0.2204 -4.8997 40 1 1.7419 -2.4546 -7.0405 41 1 1.7418 -2.4559 -5.2603 42 1 0.2882 -1.9429 -6.1504 43 1 3.7789 0.5308 -6.1479 44 1 3.7804 -1.0113 -5.2589 45 1 3.7808 -1.0106 -7.0386 46 1 1.7393 1.2509 -7.3972 47 1 0.2868 0.2223 -7.3985 48 1 1.7506 -0.3027 -11.8358 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424855549.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:44 Heat of formation + Delta-G solvation = -102.020207 kcal Electronic energy + Delta-G solvation = -23191.009858 eV Core-core repulsion = 20050.177726 eV Total energy + Delta-G solvation = -3140.832132 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.43960 -39.31604 -38.19618 -35.27097 -34.09110 -33.27162 -31.98843 -29.72018 -27.99628 -27.98724 -27.01443 -24.77810 -23.84474 -22.21051 -21.39290 -20.64203 -19.71857 -18.91173 -17.99603 -16.95123 -16.40405 -16.20291 -15.55689 -15.54250 -15.38321 -15.20285 -14.98893 -14.92510 -14.26351 -14.19969 -14.11570 -13.66605 -13.48276 -13.13200 -12.93734 -12.84639 -12.71205 -12.58920 -12.38761 -12.31157 -12.17049 -12.10026 -11.78187 -11.75686 -11.53516 -11.48810 -11.33161 -11.23368 -10.96298 -10.90843 -10.71453 -10.37006 -9.97411 -8.23416 -6.23395 1.34553 1.37492 1.47391 1.70872 2.29714 2.38006 3.12060 3.63520 3.73286 3.81483 3.93236 4.05545 4.15753 4.20066 4.27083 4.35928 4.48137 4.52519 4.59437 4.61500 4.65422 4.70943 4.79308 4.81726 4.94443 4.95629 5.01261 5.04957 5.08418 5.09610 5.21168 5.25722 5.29179 5.33746 5.37516 5.38265 5.39888 5.41962 5.47507 5.55131 5.60427 5.65840 5.68964 5.76065 6.37214 6.64456 6.83545 7.34368 7.39494 8.92194 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.032313 B = 0.003505 C = 0.003306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 866.323282 B = 7986.621263 C = 8467.390542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.068 4.068 3 H 0.054 0.946 4 C -0.109 4.109 5 C -0.122 4.122 6 C -0.114 4.114 7 C -0.110 4.110 8 C -0.094 4.094 9 H 0.114 0.886 10 C 0.509 3.491 11 O -0.580 6.580 12 N -0.712 5.712 13 C 0.139 3.861 14 C -0.058 4.058 15 C -0.123 4.123 16 C -0.123 4.123 17 C -0.003 4.003 18 C -0.502 4.502 19 H 0.053 0.947 20 C 0.006 3.994 21 N -0.951 5.951 22 Si 0.933 3.067 23 H -0.272 1.272 24 H -0.288 1.288 25 H -0.253 1.253 26 H 0.056 0.944 27 H 0.055 0.945 28 H 0.053 0.947 29 H 0.067 0.933 30 H 0.073 0.927 31 H 0.054 0.946 32 H 0.076 0.924 33 H 0.074 0.926 34 H 0.076 0.924 35 H 0.078 0.922 36 H 0.055 0.945 37 H 0.411 0.589 38 H 0.051 0.949 39 H 0.052 0.948 40 H 0.045 0.955 41 H 0.069 0.931 42 H 0.043 0.957 43 H 0.043 0.957 44 H 0.069 0.931 45 H 0.045 0.955 46 H 0.013 0.987 47 H 0.011 0.989 48 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.974 -3.199 25.915 26.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.087 4.087 3 H 0.072 0.928 4 C -0.146 4.146 5 C -0.159 4.159 6 C -0.151 4.151 7 C -0.148 4.148 8 C -0.115 4.115 9 H 0.132 0.868 10 C 0.297 3.703 11 O -0.460 6.460 12 N -0.364 5.364 13 C 0.015 3.985 14 C -0.059 4.059 15 C -0.181 4.181 16 C -0.180 4.180 17 C -0.041 4.041 18 C -0.540 4.540 19 H 0.071 0.929 20 C -0.190 4.190 21 N -0.592 5.592 22 Si 0.758 3.242 23 H -0.197 1.197 24 H -0.214 1.214 25 H -0.177 1.177 26 H 0.075 0.925 27 H 0.074 0.926 28 H 0.072 0.928 29 H 0.086 0.914 30 H 0.091 0.909 31 H 0.073 0.927 32 H 0.094 0.906 33 H 0.092 0.908 34 H 0.094 0.906 35 H 0.096 0.904 36 H 0.074 0.926 37 H 0.249 0.751 38 H 0.069 0.931 39 H 0.070 0.930 40 H 0.064 0.936 41 H 0.088 0.912 42 H 0.062 0.938 43 H 0.062 0.938 44 H 0.088 0.912 45 H 0.064 0.936 46 H 0.031 0.969 47 H 0.030 0.970 48 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 2.479 -2.495 25.800 26.039 hybrid contribution -0.421 0.577 -1.182 1.381 sum 2.058 -1.918 24.618 24.779 Atomic orbital electron populations 1.22014 0.95540 1.01696 1.02213 1.20868 0.95533 0.98766 0.93515 0.92761 1.21589 0.95880 1.00902 0.96266 1.21578 0.95155 1.00744 0.98455 1.21521 1.00941 0.99618 0.93031 1.21554 0.91632 1.01482 1.00128 1.21430 0.97925 1.01038 0.91146 0.86811 1.21311 0.79322 0.84252 0.85448 1.90617 1.39740 1.28454 1.87180 1.46056 1.53218 1.32188 1.04977 1.21232 0.98079 0.95460 0.83773 1.20553 0.96531 0.96114 0.92665 1.21698 1.00202 0.94867 1.01285 1.21693 0.93862 1.01154 1.01294 1.19564 0.95666 0.95617 0.93271 1.21371 1.30296 1.12258 0.90057 0.92859 1.25815 0.97471 0.99785 0.95910 1.70036 1.48163 1.42604 0.98431 0.85914 0.79576 0.80800 0.77881 1.19717 1.21394 1.17735 0.92471 0.92565 0.92822 0.91424 0.90872 0.92679 0.90579 0.90757 0.90580 0.90352 0.92647 0.75133 0.93098 0.92971 0.93575 0.91212 0.93774 0.93827 0.91191 0.93574 0.96879 0.97026 0.92842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.31 8.87 71.98 0.64 -2.68 16 2 C -0.07 -1.28 1.89 -10.79 -0.02 -1.30 16 3 H 0.05 1.24 8.10 -2.39 -0.02 1.22 16 4 C -0.11 -1.42 5.20 30.60 0.16 -1.26 16 5 C -0.12 -1.39 5.92 30.60 0.18 -1.21 16 6 C -0.11 -1.23 5.92 30.59 0.18 -1.05 16 7 C -0.11 -1.62 5.10 30.59 0.16 -1.46 16 8 C -0.09 -1.70 2.06 -11.54 -0.02 -1.73 16 9 H 0.11 1.65 8.14 -2.38 -0.02 1.64 16 10 C 0.51 13.36 6.86 87.65 0.60 13.96 16 11 O -0.58 -20.05 13.65 -3.04 -0.04 -20.09 16 12 N -0.71 -17.87 4.85 -463.06 -2.25 -20.12 16 13 C 0.14 4.45 4.56 86.38 0.39 4.85 16 14 C -0.06 -2.05 0.54 -52.18 -0.03 -2.08 16 15 C -0.12 -4.06 8.05 71.98 0.58 -3.48 16 16 C -0.12 -4.05 8.05 71.98 0.58 -3.47 16 17 C 0.00 -0.15 3.11 29.85 0.09 -0.06 16 18 C -0.50 -27.26 8.20 25.60 0.21 -27.05 16 19 H 0.05 3.11 5.92 -2.92 -0.02 3.09 16 20 C 0.01 0.37 5.47 84.65 0.46 0.83 16 21 N -0.95 -58.65 13.96 21.45 0.30 -58.35 16 22 Si 0.93 44.65 27.47 68.60 1.88 46.54 16 23 H -0.27 -12.66 7.11 99.48 0.71 -11.95 16 24 H -0.29 -13.65 7.11 99.48 0.71 -12.94 16 25 H -0.25 -11.52 6.54 99.48 0.65 -10.87 16 26 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 27 H 0.06 1.06 8.14 -2.39 -0.02 1.05 16 28 H 0.05 1.50 5.51 -2.39 -0.01 1.48 16 29 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 30 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 31 H 0.05 0.71 8.14 -2.39 -0.02 0.70 16 32 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 33 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 34 H 0.08 0.68 8.14 -2.38 -0.02 0.67 16 35 H 0.08 1.00 7.57 -2.39 -0.02 0.98 16 36 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 37 H 0.41 8.15 5.58 -92.71 -0.52 7.63 16 38 H 0.05 1.76 8.14 -2.38 -0.02 1.74 16 39 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 40 H 0.05 1.77 6.62 -2.39 -0.02 1.75 16 41 H 0.07 1.74 6.86 -2.39 -0.02 1.72 16 42 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 43 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 44 H 0.07 1.74 6.86 -2.39 -0.02 1.72 16 45 H 0.05 1.77 6.62 -2.39 -0.02 1.75 16 46 H 0.01 0.60 7.20 -2.39 -0.02 0.58 16 47 H 0.01 0.52 7.57 -2.39 -0.02 0.51 16 48 H 0.26 15.32 8.31 -92.71 -0.77 14.55 16 Total: -1.00 -66.98 357.20 4.40 -62.59 By element: Atomic # 1 Polarization: 16.28 SS G_CDS: 0.34 Total: 16.61 kcal Atomic # 6 Polarization: -31.34 SS G_CDS: 4.16 Total: -27.17 kcal Atomic # 7 Polarization: -76.52 SS G_CDS: -1.95 Total: -78.47 kcal Atomic # 8 Polarization: -20.05 SS G_CDS: -0.04 Total: -20.09 kcal Atomic # 14 Polarization: 44.65 SS G_CDS: 1.88 Total: 46.54 kcal Total: -66.98 4.40 -62.59 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424855549.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.433 kcal (2) G-P(sol) polarization free energy of solvation -66.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.587 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds