Wall clock time and date at job start Tue Mar 31 2020 05:24:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30995 * 1 3 3 C 1.50703 * 119.99910 * 2 1 4 4 N 1.46906 * 109.47052 * 235.97826 * 3 2 1 5 5 C 1.46900 * 111.00151 * 66.86076 * 4 3 2 6 6 C 1.50700 * 109.47169 * 71.92419 * 5 4 3 7 7 H 1.08001 * 119.99894 * 5.04075 * 6 5 4 8 8 C 1.37870 * 120.00399 * 185.03687 * 6 5 4 9 9 N 1.31523 * 119.99558 * 0.02562 * 8 6 5 10 10 Si 1.86797 * 120.00518 * 180.02562 * 8 6 5 11 11 H 1.48499 * 109.47028 * 59.99728 * 10 8 6 12 12 H 1.48500 * 109.47494 * 180.02562 * 10 8 6 13 13 H 1.48498 * 109.47206 * 300.00154 * 10 8 6 14 14 C 1.46901 * 110.99746 * 302.90892 * 4 3 2 15 15 C 1.53008 * 109.46896 * 282.48777 * 14 4 3 16 16 O 1.42902 * 109.46904 * 66.67530 * 15 14 4 17 17 C 1.42900 * 113.99763 * 177.63417 * 16 15 14 18 18 H 1.09003 * 109.46849 * 336.16120 * 17 16 15 19 19 C 1.52993 * 109.47320 * 96.16524 * 17 16 15 20 20 C 1.53002 * 109.47271 * 59.99657 * 19 17 16 21 21 C 1.53003 * 109.47066 * 60.00206 * 20 19 17 22 22 C 1.53003 * 109.46787 * 300.00060 * 21 20 19 23 23 C 1.52996 * 109.47066 * 60.00213 * 22 21 20 24 24 H 1.08998 * 109.47413 * 60.00106 * 23 22 21 25 25 C 1.53006 * 109.46726 * 179.97438 * 23 22 21 26 26 H 1.08001 * 120.00498 * 354.97763 * 1 2 3 27 27 H 1.08004 * 119.99875 * 174.70199 * 1 2 3 28 28 H 1.07999 * 120.00100 * 180.02562 * 2 1 3 29 29 H 1.09000 * 109.46880 * 355.97296 * 3 2 1 30 30 H 1.08995 * 109.47134 * 115.97970 * 3 2 1 31 31 H 1.08997 * 109.46945 * 191.92588 * 5 4 3 32 32 H 1.09004 * 109.47219 * 311.92532 * 5 4 3 33 33 H 0.97007 * 119.99505 * 180.02562 * 9 8 6 34 34 H 1.08996 * 109.47389 * 42.49108 * 14 4 3 35 35 H 1.09002 * 109.46800 * 162.49568 * 14 4 3 36 36 H 1.08997 * 109.46612 * 186.67452 * 15 14 4 37 37 H 1.08997 * 109.47312 * 306.68027 * 15 14 4 38 38 H 1.08996 * 109.47702 * 180.02562 * 19 17 16 39 39 H 1.09002 * 109.46657 * 300.00013 * 19 17 16 40 40 H 1.09002 * 109.46811 * 300.00177 * 20 19 17 41 41 H 1.08998 * 109.46948 * 180.02562 * 20 19 17 42 42 H 1.08993 * 109.46622 * 180.02562 * 21 20 19 43 43 H 1.08992 * 109.46725 * 59.99795 * 21 20 19 44 44 H 1.09001 * 109.47036 * 299.99500 * 22 21 20 45 45 H 1.08996 * 109.46584 * 180.02562 * 22 21 20 46 46 H 1.09001 * 109.46830 * 180.02562 * 25 23 22 47 47 H 1.09002 * 109.46797 * 299.99492 * 25 23 22 48 48 H 1.08998 * 109.46997 * 59.99962 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 2.9794 1.3417 -1.1480 5 6 2.2355 1.3872 -2.4138 6 6 1.6048 2.7461 -2.5774 7 1 1.8089 3.5261 -1.8589 8 6 0.7674 2.9936 -3.6443 9 7 0.5186 2.0435 -4.5191 10 14 -0.0137 4.6782 -3.8475 11 1 1.0510 5.7046 -3.9815 12 1 -0.8651 4.6856 -5.0641 13 1 -0.8485 4.9835 -2.6579 14 6 3.9032 0.1998 -1.1209 15 6 5.0065 0.4607 -0.0934 16 8 4.4410 0.4771 1.2188 17 6 5.3997 0.6613 2.2625 18 1 6.3812 0.3387 1.9152 19 6 5.4558 2.1407 2.6481 20 6 4.0780 2.5935 3.1355 21 6 3.6703 1.7638 4.3547 22 6 3.6141 0.2842 3.9690 23 6 4.9920 -0.1684 3.4817 24 1 5.7231 -0.0280 4.2777 25 6 4.9359 -1.6481 3.0966 26 1 -0.5401 0.9317 0.0819 27 1 -0.5400 -0.9314 -0.0864 28 1 1.8500 -0.9353 -0.0004 29 1 1.3573 2.1323 -0.0722 30 1 2.6349 1.3947 0.9238 31 1 2.9179 1.2011 -3.2431 32 1 1.4571 0.6241 -2.4055 33 1 -0.0703 2.2178 -5.2700 34 1 3.3572 -0.7028 -0.8467 35 1 4.3486 0.0695 -2.1072 36 1 5.7555 -0.3286 -0.1565 37 1 5.4746 1.4232 -0.2994 38 1 6.1873 2.2814 3.4439 39 1 5.7462 2.7318 1.7795 40 1 3.3468 2.4530 2.3394 41 1 4.1179 3.6476 3.4098 42 1 2.6885 2.0860 4.7015 43 1 4.4015 1.9042 5.1506 44 1 2.8829 0.1438 3.1729 45 1 3.3232 -0.3067 4.8374 46 1 5.9176 -1.9707 2.7498 47 1 4.6457 -2.2389 3.9654 48 1 4.2046 -1.7889 2.3006 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000428857786.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:00 Heat of formation + Delta-G solvation = -44.764658 kcal Electronic energy + Delta-G solvation = -23983.641119 eV Core-core repulsion = 20845.291774 eV Total energy + Delta-G solvation = -3138.349345 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.51793 -37.40986 -35.62584 -32.75159 -32.54938 -32.06703 -30.17071 -28.78798 -26.67803 -26.13874 -24.45200 -22.45104 -22.09283 -21.22524 -20.70314 -19.51079 -18.54026 -16.18305 -16.15308 -15.79958 -15.53948 -14.86943 -14.65057 -14.37924 -13.99065 -13.81177 -13.44554 -13.31326 -12.96733 -12.81032 -12.58825 -12.10432 -12.05594 -11.72864 -11.61688 -11.51577 -11.28866 -11.06516 -11.00073 -10.83067 -10.74630 -10.63717 -10.42930 -10.33074 -10.24421 -10.16338 -9.85354 -9.79973 -9.18293 -9.00099 -8.50429 -8.34521 -7.09072 -5.94360 -3.94740 3.01865 3.37675 3.41417 3.44640 3.96799 4.48775 4.71140 4.78675 4.84839 5.09673 5.20465 5.21496 5.35716 5.40701 5.49407 5.53001 5.54626 5.63939 5.66549 5.71121 5.78771 5.81700 5.83631 5.85464 5.96763 5.97890 6.04240 6.16916 6.19661 6.26827 6.33926 6.36528 6.39365 6.43781 6.51552 6.58934 6.72603 7.00728 7.32454 7.35793 7.46438 7.56602 7.60351 7.91435 8.20728 8.34197 8.66175 9.13526 9.68787 11.16149 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.021264 B = 0.004619 C = 0.004479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1316.457397 B = 6060.604613 C = 6250.562311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.169 4.169 3 C 0.086 3.914 4 N -0.523 5.523 5 C 0.188 3.812 6 C -0.500 4.500 7 H 0.061 0.939 8 C 0.055 3.945 9 N -0.900 5.900 10 Si 0.894 3.106 11 H -0.277 1.277 12 H -0.289 1.289 13 H -0.278 1.278 14 C 0.049 3.951 15 C 0.071 3.929 16 O -0.360 6.360 17 C 0.093 3.907 18 H 0.052 0.948 19 C -0.135 4.135 20 C -0.117 4.117 21 C -0.116 4.116 22 C -0.110 4.110 23 C -0.086 4.086 24 H 0.071 0.929 25 C -0.145 4.145 26 H 0.093 0.907 27 H 0.082 0.918 28 H 0.096 0.904 29 H 0.074 0.926 30 H 0.088 0.912 31 H 0.020 0.980 32 H 0.003 0.997 33 H 0.260 0.740 34 H 0.039 0.961 35 H 0.076 0.924 36 H 0.038 0.962 37 H 0.053 0.947 38 H 0.061 0.939 39 H 0.065 0.935 40 H 0.080 0.920 41 H 0.054 0.946 42 H 0.058 0.942 43 H 0.052 0.948 44 H 0.075 0.925 45 H 0.053 0.947 46 H 0.047 0.953 47 H 0.049 0.951 48 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.284 -5.107 16.331 19.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.189 4.189 3 C -0.041 4.041 4 N -0.246 5.246 5 C 0.063 3.937 6 C -0.538 4.538 7 H 0.079 0.921 8 C -0.146 4.146 9 N -0.540 5.540 10 Si 0.723 3.277 11 H -0.203 1.203 12 H -0.215 1.215 13 H -0.204 1.204 14 C -0.080 4.080 15 C -0.007 4.007 16 O -0.279 6.279 17 C 0.034 3.966 18 H 0.070 0.930 19 C -0.173 4.173 20 C -0.154 4.154 21 C -0.154 4.154 22 C -0.148 4.148 23 C -0.105 4.105 24 H 0.089 0.911 25 C -0.202 4.202 26 H 0.112 0.888 27 H 0.100 0.900 28 H 0.114 0.886 29 H 0.092 0.908 30 H 0.106 0.894 31 H 0.038 0.962 32 H 0.020 0.980 33 H 0.069 0.931 34 H 0.057 0.943 35 H 0.094 0.906 36 H 0.056 0.944 37 H 0.071 0.929 38 H 0.079 0.921 39 H 0.083 0.917 40 H 0.098 0.902 41 H 0.073 0.927 42 H 0.077 0.923 43 H 0.071 0.929 44 H 0.094 0.906 45 H 0.072 0.928 46 H 0.066 0.934 47 H 0.068 0.932 48 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 9.284 -4.715 16.202 19.260 hybrid contribution -0.667 0.089 -0.479 0.826 sum 8.616 -4.626 15.723 18.517 Atomic orbital electron populations 1.23658 0.96182 1.00855 1.02299 1.23600 0.96320 1.00311 0.98675 1.21426 0.94528 0.93349 0.94807 1.62403 1.19241 1.38315 1.04648 1.19782 0.92066 0.97141 0.84684 1.21107 1.26313 0.97205 1.09207 0.92116 1.24963 0.96697 0.96890 0.96027 1.69960 1.37561 1.32529 1.13957 0.86620 0.79225 0.84614 0.77283 1.20275 1.21478 1.20359 1.22165 0.94649 0.94154 0.97047 1.22676 0.95740 0.99460 0.82775 1.88011 1.32755 1.93382 1.13796 1.22019 0.91889 0.94120 0.88529 0.92951 1.21943 0.97867 0.96614 1.00897 1.21472 0.97469 0.98253 0.98242 1.21506 1.00771 0.95486 0.97625 1.21503 0.97098 0.95427 1.00741 1.21229 0.98043 0.94994 0.96215 0.91083 1.21766 1.01730 0.95128 1.01560 0.88843 0.89969 0.88627 0.90750 0.89380 0.96223 0.97953 0.93067 0.94323 0.90600 0.94429 0.92907 0.92082 0.91664 0.90196 0.92735 0.92305 0.92889 0.90602 0.92834 0.93370 0.93174 0.91621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.55 14.31 29.02 0.42 -3.14 16 2 C -0.17 -3.19 7.64 -36.02 -0.28 -3.47 16 3 C 0.09 1.72 5.39 -4.97 -0.03 1.69 16 4 N -0.52 -11.21 4.58 -237.51 -1.09 -12.30 16 5 C 0.19 4.92 4.62 -4.98 -0.02 4.90 16 6 C -0.50 -14.15 8.43 -34.44 -0.29 -14.44 16 7 H 0.06 1.72 7.70 -52.49 -0.40 1.31 16 8 C 0.05 1.58 5.46 -17.82 -0.10 1.48 16 9 N -0.90 -27.05 13.29 55.43 0.74 -26.31 16 10 Si 0.89 21.98 29.54 -169.99 -5.02 16.96 16 11 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 12 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 13 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 14 C 0.05 0.87 5.40 -3.82 -0.02 0.85 16 15 C 0.07 1.03 6.08 37.16 0.23 1.26 16 16 O -0.36 -5.06 5.35 -35.23 -0.19 -5.25 16 17 C 0.09 1.07 2.39 -26.73 -0.06 1.01 16 18 H 0.05 0.57 7.69 -51.93 -0.40 0.17 16 19 C -0.14 -1.54 5.66 -26.73 -0.15 -1.69 16 20 C -0.12 -1.41 5.78 -26.73 -0.15 -1.56 16 21 C -0.12 -1.24 5.92 -26.73 -0.16 -1.39 16 22 C -0.11 -1.21 5.06 -26.73 -0.14 -1.34 16 23 C -0.09 -0.89 2.55 -90.62 -0.23 -1.13 16 24 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 25 C -0.14 -1.46 9.05 37.16 0.34 -1.13 16 26 H 0.09 1.77 7.85 -52.49 -0.41 1.36 16 27 H 0.08 1.37 8.06 -52.48 -0.42 0.95 16 28 H 0.10 1.72 6.42 -52.49 -0.34 1.39 16 29 H 0.07 1.65 6.90 -51.93 -0.36 1.29 16 30 H 0.09 1.61 3.90 -51.93 -0.20 1.41 16 31 H 0.02 0.55 7.67 -51.93 -0.40 0.15 16 32 H 0.00 0.07 7.00 -51.93 -0.36 -0.29 16 33 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 34 H 0.04 0.69 5.64 -51.93 -0.29 0.39 16 35 H 0.08 1.35 7.61 -51.93 -0.40 0.96 16 36 H 0.04 0.47 8.05 -51.93 -0.42 0.06 16 37 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 40 H 0.08 1.16 5.91 -51.93 -0.31 0.85 16 41 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 43 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 44 H 0.08 0.99 7.68 -51.93 -0.40 0.60 16 45 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 46 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 47 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 48 H 0.06 0.77 7.68 -51.93 -0.40 0.37 16 LS Contribution 363.31 15.07 5.48 5.48 Total: -1.00 -29.32 363.31 -9.61 -38.92 By element: Atomic # 1 Polarization: 9.49 SS G_CDS: -8.87 Total: 0.61 kcal Atomic # 6 Polarization: -17.46 SS G_CDS: -0.65 Total: -18.11 kcal Atomic # 7 Polarization: -38.26 SS G_CDS: -0.35 Total: -38.61 kcal Atomic # 8 Polarization: -5.06 SS G_CDS: -0.19 Total: -5.25 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -29.32 -9.61 -38.92 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000428857786.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.842 kcal (2) G-P(sol) polarization free energy of solvation -29.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.923 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds