Wall clock time and date at job start Tue Mar 31 2020 05:24:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30991 * 1 3 3 C 1.50699 * 120.00168 * 2 1 4 4 N 1.46901 * 109.47151 * 234.77430 * 3 2 1 5 5 C 1.46901 * 110.99803 * 68.47814 * 4 3 2 6 6 C 1.50699 * 109.47078 * 72.01635 * 5 4 3 7 7 H 1.08002 * 120.00281 * 5.01035 * 6 5 4 8 8 C 1.37882 * 120.00018 * 185.01197 * 6 5 4 9 9 N 1.31513 * 119.99760 * 180.02562 * 8 6 5 10 10 Si 1.86792 * 120.00047 * 359.97438 * 8 6 5 11 11 H 1.48506 * 109.47001 * 90.00083 * 10 8 6 12 12 H 1.48495 * 109.47434 * 210.00332 * 10 8 6 13 13 H 1.48506 * 109.47279 * 330.00465 * 10 8 6 14 14 C 1.46895 * 111.00356 * 304.52691 * 4 3 2 15 15 C 1.53011 * 109.46982 * 283.56147 * 14 4 3 16 16 O 1.42898 * 109.46980 * 66.53639 * 15 14 4 17 17 C 1.42903 * 113.99802 * 180.02562 * 16 15 14 18 18 H 1.08993 * 109.46990 * 329.99835 * 17 16 15 19 19 C 1.53002 * 109.46944 * 89.99921 * 17 16 15 20 20 C 1.52996 * 109.47042 * 179.97438 * 19 17 16 21 21 C 1.52996 * 109.47251 * 300.00381 * 20 19 17 22 22 C 1.53002 * 109.47409 * 59.99843 * 21 20 19 23 23 C 1.53001 * 109.46803 * 299.99823 * 22 21 20 24 24 H 1.08993 * 109.47249 * 300.00159 * 23 22 21 25 25 C 1.53000 * 109.46840 * 179.97438 * 23 22 21 26 26 H 1.08007 * 119.99934 * 0.02562 * 1 2 3 27 27 H 1.07997 * 120.00460 * 180.02562 * 1 2 3 28 28 H 1.08007 * 120.00234 * 179.72729 * 2 1 3 29 29 H 1.09000 * 109.47257 * 354.77715 * 3 2 1 30 30 H 1.08996 * 109.47250 * 114.77833 * 3 2 1 31 31 H 1.09004 * 109.47162 * 192.00915 * 5 4 3 32 32 H 1.08994 * 109.47461 * 312.01394 * 5 4 3 33 33 H 0.97004 * 119.99971 * 179.97438 * 9 8 6 34 34 H 1.08998 * 109.47374 * 43.55541 * 14 4 3 35 35 H 1.09003 * 109.47646 * 163.56261 * 14 4 3 36 36 H 1.09000 * 109.47155 * 186.53978 * 15 14 4 37 37 H 1.09004 * 109.46747 * 306.53563 * 15 14 4 38 38 H 1.08993 * 109.47101 * 299.99908 * 19 17 16 39 39 H 1.09000 * 109.47126 * 60.00454 * 19 17 16 40 40 H 1.08999 * 109.47261 * 179.97438 * 20 19 17 41 41 H 1.09007 * 109.47242 * 60.00250 * 20 19 17 42 42 H 1.09000 * 109.47303 * 299.99552 * 21 20 19 43 43 H 1.09008 * 109.47378 * 179.97438 * 21 20 19 44 44 H 1.09002 * 109.47025 * 180.02562 * 22 21 20 45 45 H 1.08993 * 109.46916 * 60.00240 * 22 21 20 46 46 H 1.08993 * 109.47647 * 300.00305 * 25 23 22 47 47 H 1.09002 * 109.46688 * 60.00732 * 25 23 22 48 48 H 1.08999 * 109.46822 * 179.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 3.0001 1.3297 -1.1314 5 6 2.2798 1.4005 -2.4097 6 6 1.6839 2.7747 -2.5751 7 1 1.8930 3.5452 -1.8476 8 6 0.8717 3.0486 -3.6551 9 7 0.3521 4.2481 -3.7997 10 14 0.5105 1.7164 -4.9137 11 1 -0.7047 0.9666 -4.5059 12 1 0.2853 2.3390 -6.2428 13 1 1.6639 0.7843 -4.9928 14 6 3.8981 0.1677 -1.0969 15 6 4.9728 0.3852 -0.0297 16 8 4.3651 0.3927 1.2636 17 6 5.2867 0.5907 2.3377 18 1 6.2591 0.1828 2.0619 19 6 5.4238 2.0877 2.6225 20 6 6.4101 2.2997 3.7728 21 6 5.8942 1.5874 5.0248 22 6 5.7571 0.0904 4.7399 23 6 4.7707 -0.1215 3.5896 24 1 3.7983 0.2865 3.8650 25 6 4.6341 -1.6185 3.3043 26 1 -0.5400 0.9354 -0.0004 27 1 -0.5401 -0.9352 0.0004 28 1 1.8500 -0.9353 0.0045 29 1 1.3589 2.1315 -0.0935 30 1 2.6181 1.4044 0.9330 31 1 2.9722 1.2038 -3.2283 32 1 1.4840 0.6558 -2.4201 33 1 -0.2190 4.4409 -4.5597 34 1 3.3245 -0.7278 -0.8576 35 1 4.3725 0.0459 -2.0707 36 1 5.7054 -0.4202 -0.0823 37 1 5.4693 1.3399 -0.2034 38 1 5.7910 2.5951 1.7305 39 1 4.4514 2.4956 2.8984 40 1 6.5081 3.3662 3.9755 41 1 7.3827 1.8917 3.4975 42 1 4.9217 1.9954 5.3002 43 1 6.5971 1.7381 5.8442 44 1 5.3891 -0.4169 5.6317 45 1 6.7296 -0.3175 4.4646 46 1 5.6067 -2.0262 3.0288 47 1 4.2667 -2.1262 4.1962 48 1 3.9311 -1.7695 2.4852 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000428857787.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:02 Heat of formation + Delta-G solvation = -42.908778 kcal Electronic energy + Delta-G solvation = -23475.867051 eV Core-core repulsion = 20337.598182 eV Total energy + Delta-G solvation = -3138.268868 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.48588 -37.69171 -35.98813 -32.75693 -32.68052 -32.16862 -30.28970 -28.96015 -27.14014 -26.21244 -24.51296 -22.51981 -21.81666 -21.31734 -20.66652 -19.90575 -18.58992 -16.74735 -16.64651 -15.67331 -15.18541 -15.12212 -14.68078 -14.41734 -14.08150 -13.94643 -13.83064 -13.36940 -13.18223 -12.84787 -12.67383 -12.34932 -12.20915 -11.97969 -11.80493 -11.54553 -11.36290 -11.22348 -11.01045 -10.96882 -10.88115 -10.66798 -10.63323 -10.51785 -10.36033 -10.20976 -10.05698 -9.73382 -9.26767 -9.08669 -8.66326 -8.49990 -7.23772 -5.99009 -3.94691 2.90128 3.32233 3.39420 3.41708 3.82960 4.47596 4.57908 4.61879 4.81291 4.91007 5.03153 5.09114 5.21989 5.33332 5.35238 5.36811 5.41478 5.50684 5.54637 5.59123 5.64448 5.67763 5.70815 5.78328 5.85075 5.90772 5.92992 6.00856 6.03645 6.11079 6.19284 6.21008 6.27990 6.30254 6.38665 6.42854 6.53376 6.88581 6.93115 7.09566 7.23566 7.38098 7.53185 7.71000 8.03704 8.16789 8.74946 9.11909 9.64146 11.14478 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.025060 B = 0.004073 C = 0.003886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1117.051642 B = 6873.249738 C = 7203.805620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.171 4.171 3 C 0.086 3.914 4 N -0.515 5.515 5 C 0.159 3.841 6 C -0.501 4.501 7 H 0.080 0.920 8 C 0.068 3.932 9 N -0.903 5.903 10 Si 0.874 3.126 11 H -0.278 1.278 12 H -0.287 1.287 13 H -0.269 1.269 14 C 0.046 3.954 15 C 0.072 3.928 16 O -0.367 6.367 17 C 0.096 3.904 18 H 0.052 0.948 19 C -0.142 4.142 20 C -0.117 4.117 21 C -0.122 4.122 22 C -0.111 4.111 23 C -0.087 4.087 24 H 0.077 0.923 25 C -0.143 4.143 26 H 0.098 0.902 27 H 0.082 0.918 28 H 0.098 0.902 29 H 0.081 0.919 30 H 0.089 0.911 31 H 0.021 0.979 32 H -0.009 1.009 33 H 0.262 0.738 34 H 0.040 0.960 35 H 0.077 0.923 36 H 0.039 0.961 37 H 0.055 0.945 38 H 0.067 0.933 39 H 0.071 0.929 40 H 0.063 0.937 41 H 0.058 0.942 42 H 0.063 0.937 43 H 0.059 0.941 44 H 0.064 0.936 45 H 0.060 0.940 46 H 0.047 0.953 47 H 0.050 0.950 48 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.356 -10.322 15.830 22.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.190 4.190 3 C -0.041 4.041 4 N -0.237 5.237 5 C 0.032 3.968 6 C -0.540 4.540 7 H 0.098 0.902 8 C -0.133 4.133 9 N -0.542 5.542 10 Si 0.701 3.299 11 H -0.204 1.204 12 H -0.213 1.213 13 H -0.194 1.194 14 C -0.083 4.083 15 C -0.005 4.005 16 O -0.286 6.286 17 C 0.038 3.962 18 H 0.070 0.930 19 C -0.179 4.179 20 C -0.154 4.154 21 C -0.159 4.159 22 C -0.149 4.149 23 C -0.106 4.106 24 H 0.096 0.904 25 C -0.200 4.200 26 H 0.116 0.884 27 H 0.101 0.899 28 H 0.116 0.884 29 H 0.100 0.900 30 H 0.107 0.893 31 H 0.039 0.961 32 H 0.008 0.992 33 H 0.072 0.928 34 H 0.058 0.942 35 H 0.095 0.905 36 H 0.057 0.943 37 H 0.074 0.926 38 H 0.085 0.915 39 H 0.090 0.910 40 H 0.081 0.919 41 H 0.077 0.923 42 H 0.082 0.918 43 H 0.078 0.922 44 H 0.082 0.918 45 H 0.079 0.921 46 H 0.067 0.933 47 H 0.069 0.931 48 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 11.354 -9.797 15.753 21.750 hybrid contribution -0.542 -1.397 -1.023 1.815 sum 10.811 -11.194 14.729 21.428 Atomic orbital electron populations 1.23755 0.96218 1.01072 1.02370 1.23655 0.96347 1.00410 0.98602 1.21432 0.94333 0.93624 0.94747 1.62233 1.20186 1.37213 1.04076 1.20226 0.92416 0.97586 0.86524 1.21030 1.27626 0.95659 1.09637 0.90220 1.24883 0.95635 0.95185 0.97625 1.69898 1.33612 1.20294 1.30422 0.86888 0.79077 0.82564 0.81350 1.20367 1.21323 1.19395 1.22222 0.95114 0.93981 0.96987 1.22623 0.95313 0.99662 0.82940 1.88000 1.33636 1.93170 1.13829 1.22025 0.92364 0.94223 0.87596 0.92978 1.22031 1.00397 0.96949 0.98560 1.21494 0.98635 1.00330 0.94967 1.21570 1.01405 0.95414 0.97537 1.21578 0.99215 0.96307 0.97806 1.21180 0.99757 0.95925 0.93722 0.90435 1.21749 1.01656 0.94972 1.01659 0.88409 0.89916 0.88449 0.90025 0.89288 0.96115 0.99168 0.92811 0.94178 0.90509 0.94259 0.92649 0.91470 0.90978 0.91852 0.92293 0.91776 0.92189 0.91765 0.92125 0.93342 0.93130 0.91677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.48 14.32 29.02 0.42 -3.06 16 2 C -0.17 -3.11 7.70 -36.02 -0.28 -3.38 16 3 C 0.09 1.71 5.33 -4.98 -0.03 1.68 16 4 N -0.51 -10.82 4.58 -237.52 -1.09 -11.91 16 5 C 0.16 3.90 3.69 -4.98 -0.02 3.88 16 6 C -0.50 -14.41 8.96 -34.44 -0.31 -14.71 16 7 H 0.08 2.51 7.96 -52.49 -0.42 2.09 16 8 C 0.07 1.98 5.47 -17.82 -0.10 1.89 16 9 N -0.90 -27.99 13.96 55.43 0.77 -27.21 16 10 Si 0.87 21.97 27.37 -169.99 -4.65 17.32 16 11 H -0.28 -6.92 7.11 56.52 0.40 -6.51 16 12 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 13 H -0.27 -6.52 6.69 56.52 0.38 -6.14 16 14 C 0.05 0.78 5.39 -3.82 -0.02 0.76 16 15 C 0.07 1.03 6.06 37.16 0.23 1.25 16 16 O -0.37 -5.24 6.57 -35.23 -0.23 -5.47 16 17 C 0.10 1.12 2.04 -26.73 -0.05 1.06 16 18 H 0.05 0.58 7.79 -51.93 -0.40 0.17 16 19 C -0.14 -1.63 5.54 -26.73 -0.15 -1.78 16 20 C -0.12 -1.08 5.92 -26.74 -0.16 -1.24 16 21 C -0.12 -1.02 5.92 -26.73 -0.16 -1.18 16 22 C -0.11 -0.94 5.20 -26.73 -0.14 -1.08 16 23 C -0.09 -0.90 2.46 -90.62 -0.22 -1.12 16 24 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 25 C -0.14 -1.43 9.05 37.16 0.34 -1.09 16 26 H 0.10 1.82 7.84 -52.48 -0.41 1.41 16 27 H 0.08 1.29 8.06 -52.49 -0.42 0.87 16 28 H 0.10 1.67 6.37 -52.48 -0.33 1.33 16 29 H 0.08 1.85 6.88 -51.93 -0.36 1.49 16 30 H 0.09 1.67 5.75 -51.93 -0.30 1.37 16 31 H 0.02 0.52 7.08 -51.93 -0.37 0.15 16 32 H -0.01 -0.24 6.23 -51.93 -0.32 -0.56 16 33 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 34 H 0.04 0.67 5.58 -51.93 -0.29 0.38 16 35 H 0.08 1.27 7.63 -51.93 -0.40 0.87 16 36 H 0.04 0.48 8.09 -51.93 -0.42 0.06 16 37 H 0.06 0.83 7.87 -51.93 -0.41 0.43 16 38 H 0.07 0.84 7.87 -51.93 -0.41 0.43 16 39 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 40 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.06 0.51 8.14 -51.92 -0.42 0.09 16 42 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 43 H 0.06 0.44 8.14 -51.92 -0.42 0.01 16 44 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 45 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 46 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 47 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 48 H 0.06 0.75 7.68 -51.93 -0.40 0.35 16 LS Contribution 364.84 15.07 5.50 5.50 Total: -1.00 -30.24 364.84 -9.40 -39.64 By element: Atomic # 1 Polarization: 9.31 SS G_CDS: -9.05 Total: 0.26 kcal Atomic # 6 Polarization: -17.48 SS G_CDS: -0.65 Total: -18.13 kcal Atomic # 7 Polarization: -38.81 SS G_CDS: -0.31 Total: -39.12 kcal Atomic # 8 Polarization: -5.24 SS G_CDS: -0.23 Total: -5.47 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -4.65 Total: 17.32 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -30.24 -9.40 -39.64 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000428857787.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.268 kcal (2) G-P(sol) polarization free energy of solvation -30.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.641 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds