Wall clock time and date at job start Tue Mar 31 2020 05:24:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31006 * 1 3 3 C 1.50702 * 119.99632 * 2 1 4 4 N 1.46906 * 109.46831 * 124.12221 * 3 2 1 5 5 C 1.46904 * 110.99653 * 298.67792 * 4 3 2 6 6 C 1.50700 * 109.46998 * 288.10805 * 5 4 3 7 7 H 1.07998 * 119.99897 * 354.70728 * 6 5 4 8 8 C 1.37877 * 120.00090 * 174.71162 * 6 5 4 9 9 N 1.31514 * 119.99638 * 359.97438 * 8 6 5 10 10 Si 1.86797 * 119.99935 * 180.02562 * 8 6 5 11 11 H 1.48499 * 109.47153 * 89.99806 * 10 8 6 12 12 H 1.48506 * 109.46701 * 209.99453 * 10 8 6 13 13 H 1.48500 * 109.47181 * 329.99189 * 10 8 6 14 14 C 1.46900 * 111.00062 * 62.63054 * 4 3 2 15 15 C 1.52999 * 109.47243 * 66.04519 * 14 4 3 16 16 O 1.42899 * 109.46868 * 64.99849 * 15 14 4 17 17 C 1.42897 * 113.99832 * 179.97438 * 16 15 14 18 18 H 1.08994 * 109.47250 * 30.00578 * 17 16 15 19 19 C 1.52999 * 109.47542 * 270.00208 * 17 16 15 20 20 C 1.53000 * 109.46931 * 300.00449 * 19 17 16 21 21 C 1.52999 * 109.46777 * 299.99317 * 20 19 17 22 22 C 1.52999 * 109.47190 * 60.00509 * 21 20 19 23 23 C 1.52997 * 109.47113 * 299.99915 * 22 21 20 24 24 H 1.09004 * 109.46992 * 299.99614 * 23 22 21 25 25 C 1.52999 * 109.47113 * 180.02562 * 23 22 21 26 26 H 1.07994 * 119.99892 * 179.97438 * 1 2 3 27 27 H 1.08000 * 120.00128 * 0.02562 * 1 2 3 28 28 H 1.07995 * 119.99834 * 180.02562 * 2 1 3 29 29 H 1.08997 * 109.47291 * 4.12507 * 3 2 1 30 30 H 1.09003 * 109.46935 * 244.11548 * 3 2 1 31 31 H 1.08994 * 109.47178 * 48.11174 * 5 4 3 32 32 H 1.09002 * 109.46711 * 168.11074 * 5 4 3 33 33 H 0.96998 * 119.99992 * 180.02562 * 9 8 6 34 34 H 1.09002 * 109.47179 * 186.05012 * 14 4 3 35 35 H 1.09009 * 109.47044 * 306.04708 * 14 4 3 36 36 H 1.08999 * 109.47430 * 185.00078 * 15 14 4 37 37 H 1.08995 * 109.46853 * 304.99994 * 15 14 4 38 38 H 1.08999 * 109.46775 * 60.00035 * 19 17 16 39 39 H 1.08997 * 109.47287 * 179.97438 * 19 17 16 40 40 H 1.09002 * 109.46968 * 180.02562 * 20 19 17 41 41 H 1.08990 * 109.47580 * 59.99868 * 20 19 17 42 42 H 1.08996 * 109.47861 * 299.99973 * 21 20 19 43 43 H 1.09010 * 109.47070 * 180.02562 * 21 20 19 44 44 H 1.08999 * 109.47134 * 179.97438 * 22 21 20 45 45 H 1.09004 * 109.46876 * 59.99600 * 22 21 20 46 46 H 1.08996 * 109.47155 * 299.99117 * 25 23 22 47 47 H 1.09000 * 109.47568 * 60.00092 * 25 23 22 48 48 H 1.09010 * 109.46886 * 179.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 7 2.9812 1.3408 1.1466 5 6 2.2436 1.2526 2.4140 6 6 1.5129 2.5472 2.6611 7 1 1.6560 3.3840 1.9935 8 6 0.6616 2.6634 3.7394 9 7 0.4870 1.6443 4.5521 10 14 -0.2447 4.2679 4.0452 11 1 -1.5486 4.2430 3.3349 12 1 -0.4779 4.4347 5.5023 13 1 0.5718 5.4014 3.5416 14 6 3.9881 0.2757 1.0483 15 6 4.8967 0.5422 -0.1535 16 8 5.6378 1.7440 0.0669 17 6 6.5225 2.0856 -1.0019 18 1 6.1130 1.7198 -1.9435 19 6 7.8898 1.4441 -0.7571 20 6 8.4646 1.9576 0.5646 21 6 8.6195 3.4782 0.4969 22 6 7.2522 4.1197 0.2520 23 6 6.6774 3.6062 -1.0696 24 1 7.3522 3.8668 -1.8850 25 6 5.3104 4.2482 -1.3148 26 1 -0.5400 -0.9353 -0.0004 27 1 -0.5400 0.9353 -0.0004 28 1 1.8500 -0.9353 -0.0004 29 1 1.3575 2.1323 0.0739 30 1 2.6337 1.3955 -0.9246 31 1 1.5255 0.4345 2.3603 32 1 2.9433 1.0689 3.2295 33 1 -0.1122 1.7259 5.3105 34 1 4.5866 0.2563 1.9591 35 1 3.4894 -0.6852 0.9207 36 1 5.5866 -0.2921 -0.2796 37 1 4.2888 0.6498 -1.0517 38 1 7.7795 0.3608 -0.7089 39 1 8.5645 1.7043 -1.5726 40 1 9.4389 1.5009 0.7389 41 1 7.7899 1.6970 1.3799 42 1 9.2944 3.7388 -0.3184 43 1 9.0294 3.8440 1.4384 44 1 7.3625 5.2030 0.2042 45 1 6.5774 3.8591 1.0674 46 1 4.6353 3.9880 -0.4996 47 1 5.4211 5.3315 -1.3633 48 1 4.9010 3.8827 -2.2567 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000428857791.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:07 Heat of formation + Delta-G solvation = -44.856132 kcal Electronic energy + Delta-G solvation = -23608.436098 eV Core-core repulsion = 20470.082786 eV Total energy + Delta-G solvation = -3138.353312 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.41844 -37.53742 -35.59837 -32.75414 -32.48351 -32.11257 -30.12206 -28.78032 -26.63811 -25.95868 -24.78426 -22.44149 -21.99008 -21.14655 -20.71114 -19.41124 -18.63116 -16.23255 -16.03427 -15.81297 -15.48084 -14.88217 -14.56179 -14.29476 -14.16240 -13.91793 -13.49126 -13.27507 -12.96384 -12.86927 -12.46546 -12.10867 -12.00048 -11.71635 -11.52764 -11.42948 -11.22036 -11.16738 -10.93246 -10.77769 -10.69232 -10.64787 -10.46101 -10.40097 -10.28305 -10.14118 -9.84895 -9.77151 -9.13175 -9.04463 -8.66808 -8.33595 -7.08760 -5.93523 -3.93445 2.90855 3.36196 3.42531 3.47453 4.02396 4.49468 4.76100 4.82776 4.91893 5.05819 5.25240 5.27012 5.38356 5.41845 5.51618 5.53102 5.56348 5.57718 5.65369 5.69272 5.72234 5.73377 5.85974 5.91629 5.98618 6.06617 6.08548 6.16048 6.20048 6.27297 6.32414 6.40065 6.43259 6.44559 6.47415 6.60528 6.72502 6.78330 7.18588 7.33384 7.39062 7.51179 7.68344 7.91931 8.21237 8.29994 8.65784 9.14799 9.69903 11.17115 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.016092 B = 0.004886 C = 0.004319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1739.600674 B = 5729.814104 C = 6481.969536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.183 4.183 3 C 0.089 3.911 4 N -0.516 5.516 5 C 0.190 3.810 6 C -0.496 4.496 7 H 0.062 0.938 8 C 0.054 3.946 9 N -0.900 5.900 10 Si 0.893 3.107 11 H -0.283 1.283 12 H -0.288 1.288 13 H -0.273 1.273 14 C 0.053 3.947 15 C 0.069 3.931 16 O -0.347 6.347 17 C 0.092 3.908 18 H 0.051 0.949 19 C -0.140 4.140 20 C -0.114 4.114 21 C -0.116 4.116 22 C -0.112 4.112 23 C -0.081 4.081 24 H 0.068 0.932 25 C -0.147 4.147 26 H 0.084 0.916 27 H 0.097 0.903 28 H 0.094 0.906 29 H 0.083 0.917 30 H 0.060 0.940 31 H 0.003 0.997 32 H 0.021 0.979 33 H 0.259 0.741 34 H 0.074 0.926 35 H 0.037 0.963 36 H 0.037 0.963 37 H 0.044 0.956 38 H 0.059 0.941 39 H 0.062 0.938 40 H 0.052 0.948 41 H 0.073 0.927 42 H 0.052 0.948 43 H 0.058 0.942 44 H 0.055 0.945 45 H 0.080 0.920 46 H 0.078 0.922 47 H 0.048 0.952 48 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.695 -0.875 -12.636 17.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.203 4.203 3 C -0.039 4.039 4 N -0.239 5.239 5 C 0.066 3.934 6 C -0.535 4.535 7 H 0.080 0.920 8 C -0.146 4.146 9 N -0.541 5.541 10 Si 0.721 3.279 11 H -0.209 1.209 12 H -0.214 1.214 13 H -0.198 1.198 14 C -0.076 4.076 15 C -0.008 4.008 16 O -0.265 6.265 17 C 0.033 3.967 18 H 0.069 0.931 19 C -0.177 4.177 20 C -0.151 4.151 21 C -0.154 4.154 22 C -0.150 4.150 23 C -0.100 4.100 24 H 0.086 0.914 25 C -0.205 4.205 26 H 0.102 0.898 27 H 0.115 0.885 28 H 0.112 0.888 29 H 0.101 0.899 30 H 0.078 0.922 31 H 0.021 0.979 32 H 0.039 0.961 33 H 0.069 0.931 34 H 0.092 0.908 35 H 0.055 0.945 36 H 0.055 0.945 37 H 0.062 0.938 38 H 0.077 0.923 39 H 0.081 0.919 40 H 0.071 0.929 41 H 0.092 0.908 42 H 0.071 0.929 43 H 0.077 0.923 44 H 0.073 0.927 45 H 0.098 0.902 46 H 0.097 0.903 47 H 0.067 0.933 48 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 12.850 -0.340 -12.286 17.781 hybrid contribution -0.967 -0.344 0.086 1.030 sum 11.883 -0.683 -12.199 17.044 Atomic orbital electron populations 1.23698 0.96073 1.01087 1.00849 1.23604 0.96740 0.99945 0.99995 1.21282 0.94602 0.94124 0.93917 1.62378 1.14469 1.43151 1.03853 1.19760 0.92101 0.97051 0.84537 1.21133 1.23856 0.98276 1.10258 0.92029 1.24957 0.96999 0.96438 0.96209 1.69961 1.37906 1.30342 1.15849 0.86576 0.79978 0.84164 0.77173 1.20893 1.21403 1.19806 1.22075 0.94215 0.93603 0.97695 1.22596 0.92992 0.86737 0.98470 1.88114 1.55592 1.41920 1.40885 1.22016 0.89516 0.94816 0.90329 0.93132 1.22018 0.97306 1.00056 0.98350 1.21404 1.00108 0.95486 0.98108 1.21504 0.97320 0.95647 1.00892 1.21519 0.96466 0.98810 0.98164 1.21150 0.97500 0.93412 0.97891 0.91358 1.21792 0.96943 0.99429 1.02306 0.89799 0.88477 0.88774 0.89894 0.92216 0.97897 0.96054 0.93149 0.90765 0.94462 0.94528 0.93782 0.92268 0.91888 0.92933 0.90786 0.92885 0.92337 0.92671 0.90177 0.90269 0.93334 0.93590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.19 14.32 29.01 0.42 -2.77 16 2 C -0.18 -3.31 7.46 -36.03 -0.27 -3.58 16 3 C 0.09 1.71 5.47 -4.97 -0.03 1.68 16 4 N -0.52 -10.99 4.61 -237.50 -1.09 -12.09 16 5 C 0.19 4.96 4.60 -4.97 -0.02 4.94 16 6 C -0.50 -14.01 8.50 -34.44 -0.29 -14.30 16 7 H 0.06 1.74 7.67 -52.49 -0.40 1.34 16 8 C 0.05 1.56 5.46 -17.82 -0.10 1.46 16 9 N -0.90 -27.02 13.29 55.43 0.74 -26.29 16 10 Si 0.89 21.97 29.54 -169.99 -5.02 16.95 16 11 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 12 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 13 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 14 C 0.05 0.95 5.17 -3.82 -0.02 0.93 16 15 C 0.07 1.03 5.81 37.16 0.22 1.24 16 16 O -0.35 -5.41 7.91 -35.23 -0.28 -5.69 16 17 C 0.09 1.15 2.35 -26.73 -0.06 1.09 16 18 H 0.05 0.60 7.79 -51.93 -0.40 0.20 16 19 C -0.14 -1.53 5.63 -26.73 -0.15 -1.68 16 20 C -0.11 -1.30 5.78 -26.73 -0.15 -1.46 16 21 C -0.12 -1.28 5.92 -26.73 -0.16 -1.44 16 22 C -0.11 -1.41 5.06 -26.73 -0.14 -1.54 16 23 C -0.08 -0.98 2.55 -90.62 -0.23 -1.21 16 24 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 25 C -0.15 -1.93 9.05 37.16 0.34 -1.59 16 26 H 0.08 1.34 8.06 -52.49 -0.42 0.91 16 27 H 0.10 1.78 7.84 -52.49 -0.41 1.37 16 28 H 0.09 1.59 6.75 -52.49 -0.35 1.23 16 29 H 0.08 1.75 7.01 -51.93 -0.36 1.39 16 30 H 0.06 1.02 6.26 -51.93 -0.32 0.69 16 31 H 0.00 0.09 6.77 -51.93 -0.35 -0.26 16 32 H 0.02 0.60 7.81 -51.93 -0.41 0.20 16 33 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 34 H 0.07 1.40 7.86 -51.93 -0.41 0.99 16 35 H 0.04 0.64 6.27 -51.92 -0.33 0.32 16 36 H 0.04 0.47 7.87 -51.93 -0.41 0.06 16 37 H 0.04 0.64 6.23 -51.93 -0.32 0.31 16 38 H 0.06 0.64 7.87 -51.93 -0.41 0.23 16 39 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.07 1.01 7.68 -51.93 -0.40 0.61 16 42 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 43 H 0.06 0.62 8.14 -51.92 -0.42 0.20 16 44 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 45 H 0.08 1.23 7.68 -51.93 -0.40 0.84 16 46 H 0.08 1.28 7.68 -51.93 -0.40 0.88 16 47 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 48 H 0.04 0.56 8.14 -51.92 -0.42 0.13 16 LS Contribution 368.32 15.07 5.55 5.55 Total: -1.00 -29.59 368.32 -9.79 -39.38 By element: Atomic # 1 Polarization: 9.46 SS G_CDS: -9.03 Total: 0.43 kcal Atomic # 6 Polarization: -17.59 SS G_CDS: -0.65 Total: -18.24 kcal Atomic # 7 Polarization: -38.02 SS G_CDS: -0.36 Total: -38.37 kcal Atomic # 8 Polarization: -5.41 SS G_CDS: -0.28 Total: -5.69 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -29.59 -9.79 -39.38 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000428857791.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.477 kcal (2) G-P(sol) polarization free energy of solvation -29.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.379 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds