Wall clock time and date at job start Tue Mar 31 2020 05:50:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08992 * 109.47304 * 2 1 4 4 C 1.53005 * 109.47123 * 120.00178 * 2 1 3 5 5 N 1.46898 * 109.46804 * 294.65943 * 4 2 1 6 6 C 1.46897 * 110.99895 * 185.80337 * 5 4 2 7 7 C 1.52999 * 109.47095 * 174.84254 * 6 5 4 8 8 C 1.50694 * 115.55225 * 304.45590 * 7 6 5 9 9 H 1.08002 * 120.00248 * 87.42455 * 8 7 6 10 10 C 1.37877 * 119.99895 * 267.42228 * 8 7 6 11 11 N 1.31513 * 120.00069 * 6.12983 * 10 8 7 12 12 Si 1.86805 * 120.00139 * 186.12834 * 10 8 7 13 13 H 1.48507 * 109.46974 * 90.00004 * 12 10 8 14 14 H 1.48501 * 109.47284 * 210.00135 * 12 10 8 15 15 H 1.48498 * 109.46965 * 330.00205 * 12 10 8 16 16 C 1.52999 * 117.50058 * 158.78290 * 7 6 5 17 17 C 1.53007 * 117.49844 * 90.12372 * 7 6 5 18 18 C 1.53002 * 109.46771 * 239.99756 * 2 1 3 19 19 C 1.53003 * 109.46770 * 174.53052 * 18 2 1 20 20 C 1.53182 * 109.54404 * 294.12149 * 19 18 2 21 21 C 1.53098 * 109.15949 * 183.24380 * 20 19 18 22 22 O 1.42900 * 109.48703 * 57.47261 * 21 20 19 23 23 C 1.42904 * 114.10168 * 298.89358 * 22 21 20 24 24 C 1.53090 * 109.41721 * 61.15241 * 23 22 21 25 25 H 1.09001 * 109.47204 * 65.52904 * 1 2 3 26 26 H 1.08998 * 109.47074 * 185.52577 * 1 2 3 27 27 H 1.08998 * 109.46949 * 305.52450 * 1 2 3 28 28 H 1.08992 * 109.46817 * 174.66332 * 4 2 1 29 29 H 1.09000 * 109.46815 * 54.66100 * 4 2 1 30 30 H 1.00904 * 111.00129 * 61.85302 * 5 4 2 31 31 H 1.09001 * 109.47157 * 294.84436 * 6 5 4 32 32 H 1.09004 * 109.46964 * 54.84577 * 6 5 4 33 33 H 0.97002 * 120.00207 * 184.99870 * 11 10 8 34 34 H 1.09006 * 117.50006 * 0.02562 * 16 7 6 35 35 H 1.08999 * 117.50171 * 145.01992 * 16 7 6 36 36 H 1.08998 * 117.49845 * 214.97919 * 17 7 6 37 37 H 1.09001 * 117.49675 * 359.97438 * 17 7 6 38 38 H 1.08996 * 109.47307 * 294.52611 * 18 2 1 39 39 H 1.08998 * 109.47308 * 54.53238 * 18 2 1 40 40 H 1.08998 * 109.54347 * 54.29954 * 19 18 2 41 41 H 1.09004 * 109.52047 * 303.06105 * 20 19 18 42 42 H 1.09004 * 109.51770 * 63.24477 * 20 19 18 43 43 H 1.09003 * 109.40639 * 297.49796 * 21 20 19 44 44 H 1.09001 * 109.48619 * 177.50840 * 21 20 19 45 45 H 1.09004 * 109.47840 * 301.17148 * 23 22 21 46 46 H 1.08998 * 109.49001 * 181.14941 * 23 22 21 47 47 H 1.08996 * 109.52483 * 182.48645 * 24 23 22 48 48 H 1.09007 * 109.57129 * 62.33167 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7213 1.2493 5 7 1.6584 0.0416 2.4452 6 6 2.2482 -0.5466 3.6552 7 6 1.9365 0.3443 4.8593 8 6 2.3661 1.7831 4.7319 9 1 1.7061 2.5053 4.2745 10 6 3.6018 2.1775 5.1994 11 7 4.4531 1.2800 5.6458 12 14 4.0669 3.9867 5.1986 13 1 3.6591 4.6032 6.4866 14 1 5.5362 4.1201 5.0292 15 1 3.3751 4.6751 4.0793 16 6 2.0083 -0.2940 6.2479 17 6 0.6499 0.0575 5.6362 18 6 2.0400 -0.7213 -1.2493 19 6 3.5638 -0.6033 -1.3199 20 6 3.9549 0.8621 -1.5344 21 6 5.4754 0.9595 -1.6847 22 8 5.9007 0.1352 -2.7718 23 6 5.6040 -1.2524 -2.6027 24 6 4.0886 -1.4390 -2.4915 25 1 -0.3634 0.4257 -0.9354 26 1 -0.3633 -1.0229 0.0990 27 1 -0.3633 0.5971 0.8364 28 1 3.1258 -0.8048 1.2027 29 1 1.6007 -1.7176 1.2983 30 1 0.6549 0.1073 2.5273 31 1 1.8278 -1.5389 3.8188 32 1 3.3283 -0.6254 3.5315 33 1 5.2926 1.5623 6.0414 34 1 2.2781 -1.3487 6.3037 35 1 2.3661 0.3267 7.0694 36 1 0.1145 0.9094 6.0554 37 1 0.0253 -0.7657 5.2891 38 1 1.7589 -1.7733 -1.2016 39 1 1.5989 -0.2672 -2.1365 40 1 4.0010 -0.9650 -0.3893 41 1 3.4759 1.2384 -2.4383 42 1 3.6335 1.4540 -0.6773 43 1 5.9527 0.6223 -0.7646 44 1 5.7557 1.9943 -1.8817 45 1 6.0830 -1.6185 -1.6946 46 1 5.9771 -1.8112 -3.4610 47 1 3.8629 -2.4912 -2.3183 48 1 3.6116 -1.1113 -3.4152 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000430066249.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:20 Heat of formation + Delta-G solvation = -50.668396 kcal Electronic energy + Delta-G solvation = -23079.387784 eV Core-core repulsion = 19940.782433 eV Total energy + Delta-G solvation = -3138.605351 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.60439 -37.50996 -36.43803 -34.13563 -32.01719 -31.66590 -31.09105 -27.53200 -26.44278 -25.19049 -23.81068 -23.39511 -22.43935 -20.96881 -20.31082 -19.43012 -18.82863 -16.28983 -16.18159 -15.99114 -15.47834 -14.93152 -14.71587 -14.45291 -14.14953 -13.87519 -13.67648 -13.37751 -13.25238 -12.84233 -12.51317 -12.23642 -12.06028 -11.90835 -11.58405 -11.40074 -11.32785 -11.20701 -10.99730 -10.91241 -10.64177 -10.57448 -10.38817 -10.29142 -10.14737 -10.06796 -10.05429 -9.46665 -9.35751 -8.76156 -8.28584 -7.99654 -7.46232 -5.89876 -3.91793 3.36816 3.43825 3.47735 3.85079 4.51777 4.57290 4.66163 4.81504 4.89397 4.99616 5.15552 5.21284 5.31275 5.35299 5.36893 5.40651 5.49945 5.53746 5.62522 5.67782 5.73487 5.82932 5.83622 5.92378 5.94022 5.99859 6.07286 6.15457 6.17154 6.21584 6.26189 6.37004 6.40622 6.50953 6.55149 6.63482 6.69775 6.79216 6.94395 7.16284 7.18682 7.55410 7.59494 8.01980 8.03884 8.23707 8.61528 9.07624 9.71059 11.19393 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.014611 B = 0.004660 C = 0.003970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1915.951348 B = 6007.423597 C = 7051.358011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.091 4.091 3 H 0.083 0.917 4 C 0.065 3.935 5 N -0.666 5.666 6 C 0.108 3.892 7 C 0.047 3.953 8 C -0.461 4.461 9 H 0.059 0.941 10 C 0.066 3.934 11 N -0.887 5.887 12 Si 0.885 3.115 13 H -0.284 1.284 14 H -0.289 1.289 15 H -0.274 1.274 16 C -0.151 4.151 17 C -0.220 4.220 18 C -0.104 4.104 19 C -0.093 4.093 20 C -0.151 4.151 21 C 0.058 3.942 22 O -0.388 6.388 23 C 0.060 3.940 24 C -0.150 4.150 25 H 0.049 0.951 26 H 0.046 0.954 27 H 0.061 0.939 28 H 0.067 0.933 29 H 0.012 0.988 30 H 0.330 0.670 31 H -0.008 1.008 32 H 0.069 0.931 33 H 0.256 0.744 34 H 0.058 0.942 35 H 0.084 0.916 36 H 0.076 0.924 37 H 0.058 0.942 38 H 0.058 0.942 39 H 0.060 0.940 40 H 0.077 0.923 41 H 0.067 0.933 42 H 0.084 0.916 43 H 0.052 0.948 44 H 0.092 0.908 45 H 0.049 0.951 46 H 0.089 0.911 47 H 0.070 0.930 48 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.404 -5.738 -14.707 15.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.110 4.110 3 H 0.101 0.899 4 C -0.065 4.065 5 N -0.295 5.295 6 C -0.021 4.021 7 C 0.046 3.954 8 C -0.499 4.499 9 H 0.077 0.923 10 C -0.135 4.135 11 N -0.525 5.525 12 Si 0.713 3.287 13 H -0.210 1.210 14 H -0.215 1.215 15 H -0.199 1.199 16 C -0.189 4.189 17 C -0.257 4.257 18 C -0.142 4.142 19 C -0.111 4.111 20 C -0.189 4.189 21 C -0.018 4.018 22 O -0.306 6.306 23 C -0.017 4.017 24 C -0.188 4.188 25 H 0.068 0.932 26 H 0.065 0.935 27 H 0.080 0.920 28 H 0.086 0.914 29 H 0.030 0.970 30 H 0.147 0.853 31 H 0.010 0.990 32 H 0.087 0.913 33 H 0.066 0.934 34 H 0.076 0.924 35 H 0.102 0.898 36 H 0.094 0.906 37 H 0.076 0.924 38 H 0.077 0.923 39 H 0.079 0.921 40 H 0.095 0.905 41 H 0.085 0.915 42 H 0.102 0.898 43 H 0.071 0.929 44 H 0.110 0.890 45 H 0.068 0.932 46 H 0.107 0.893 47 H 0.088 0.912 48 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -1.584 -5.223 -14.931 15.897 hybrid contribution -0.370 -0.068 0.552 0.668 sum -1.954 -5.291 -14.379 15.445 Atomic orbital electron populations 1.21829 0.95763 1.01192 1.01630 1.21196 0.95262 1.00921 0.93615 0.89852 1.22008 1.00259 0.93590 0.90651 1.60241 1.14622 1.53108 1.01578 1.21520 0.98976 0.92012 0.89587 1.18869 0.93479 0.95308 0.87737 1.20287 1.00111 0.91387 1.38106 0.92288 1.24917 0.95964 0.96787 0.95835 1.70037 1.09035 1.32400 1.41060 0.86707 0.77416 0.86315 0.78240 1.21021 1.21549 1.19858 1.22430 0.98089 0.98169 1.00180 1.23081 0.91686 1.01265 1.09662 1.21627 0.94305 1.00407 0.97863 1.21275 0.96233 0.95250 0.98356 1.22280 0.96412 0.97144 1.03020 1.22620 0.94209 0.95161 0.89828 1.87894 1.80961 1.17858 1.43935 1.22554 0.94759 0.82859 1.01527 1.22244 0.96597 1.00490 0.99423 0.93196 0.93478 0.91967 0.91437 0.96968 0.85294 0.98990 0.91277 0.93449 0.92352 0.89787 0.90584 0.92387 0.92296 0.92118 0.90479 0.91457 0.89757 0.92932 0.88987 0.93236 0.89317 0.91159 0.91315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.77 8.84 37.16 0.33 -1.44 16 2 C -0.09 -1.19 2.47 -90.61 -0.22 -1.42 16 3 H 0.08 1.22 6.44 -51.93 -0.33 0.88 16 4 C 0.06 1.02 5.02 -3.82 -0.02 1.00 16 5 N -0.67 -12.79 6.13 -113.78 -0.70 -13.49 16 6 C 0.11 2.38 5.57 -3.83 -0.02 2.36 16 7 C 0.05 1.14 1.75 -155.66 -0.27 0.87 16 8 C -0.46 -12.49 8.58 -34.44 -0.30 -12.79 16 9 H 0.06 1.63 7.82 -52.49 -0.41 1.22 16 10 C 0.07 1.82 5.36 -17.82 -0.10 1.73 16 11 N -0.89 -25.28 12.51 55.43 0.69 -24.59 16 12 Si 0.89 21.46 29.55 -169.99 -5.02 16.44 16 13 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 14 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 15 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 16 C -0.15 -3.59 9.03 -26.69 -0.24 -3.83 16 17 C -0.22 -4.82 9.93 -26.69 -0.27 -5.08 16 18 C -0.10 -1.15 4.15 -26.73 -0.11 -1.26 16 19 C -0.09 -1.05 2.15 -90.43 -0.19 -1.24 16 20 C -0.15 -1.79 5.13 -26.59 -0.14 -1.92 16 21 C 0.06 0.71 6.84 37.21 0.25 0.96 16 22 O -0.39 -4.96 10.77 -35.23 -0.38 -5.34 16 23 C 0.06 0.62 6.84 37.20 0.25 0.88 16 24 C -0.15 -1.48 5.43 -26.59 -0.14 -1.63 16 25 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.06 0.81 7.09 -51.93 -0.37 0.44 16 28 H 0.07 1.12 6.18 -51.93 -0.32 0.80 16 29 H 0.01 0.19 8.14 -51.93 -0.42 -0.24 16 30 H 0.33 6.02 7.40 -39.29 -0.29 5.73 16 31 H -0.01 -0.17 8.10 -51.93 -0.42 -0.59 16 32 H 0.07 1.69 8.08 -51.93 -0.42 1.27 16 33 H 0.26 7.03 8.32 -40.82 -0.34 6.70 16 34 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 35 H 0.08 2.16 8.06 -51.93 -0.42 1.74 16 36 H 0.08 1.67 8.14 -51.93 -0.42 1.24 16 37 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 38 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.08 0.98 6.24 -51.93 -0.32 0.65 16 41 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 42 H 0.08 1.09 6.65 -51.93 -0.35 0.75 16 43 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 44 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 45 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 46 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 47 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 48 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 LS Contribution 369.83 15.07 5.57 5.57 Total: -1.00 -28.43 369.83 -10.14 -38.57 By element: Atomic # 1 Polarization: 14.79 SS G_CDS: -9.13 Total: 5.66 kcal Atomic # 6 Polarization: -21.64 SS G_CDS: -1.18 Total: -22.82 kcal Atomic # 7 Polarization: -38.07 SS G_CDS: 0.00 Total: -38.07 kcal Atomic # 8 Polarization: -4.96 SS G_CDS: -0.38 Total: -5.34 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -28.43 -10.14 -38.57 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430066249.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.097 kcal (2) G-P(sol) polarization free energy of solvation -28.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.571 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds