Wall clock time and date at job start Tue Mar 31 2020 05:50:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50698 * 120.00144 * 2 1 4 4 N 1.46899 * 109.47085 * 124.99717 * 3 2 1 5 5 C 1.46901 * 111.00073 * 66.82355 * 4 3 2 6 6 C 1.50695 * 109.47320 * 71.61396 * 5 4 3 7 7 H 1.08002 * 120.00184 * 5.03731 * 6 5 4 8 8 C 1.37882 * 120.00269 * 185.03478 * 6 5 4 9 9 N 1.31512 * 119.99785 * 0.02562 * 8 6 5 10 10 Si 1.86794 * 119.99981 * 180.02562 * 8 6 5 11 11 H 1.48500 * 109.47190 * 90.00491 * 10 8 6 12 12 H 1.48499 * 109.47115 * 210.00082 * 10 8 6 13 13 H 1.48503 * 109.47423 * 330.00078 * 10 8 6 14 14 C 1.46893 * 111.00283 * 302.86907 * 4 3 2 15 15 C 1.52996 * 109.47286 * 287.25743 * 14 4 3 16 16 H 1.08996 * 109.47147 * 52.90826 * 15 14 4 17 17 C 1.53003 * 109.47432 * 172.91206 * 15 14 4 18 18 C 1.53006 * 109.47193 * 292.91169 * 15 14 4 19 19 C 1.52997 * 109.47025 * 67.39699 * 18 15 14 20 20 C 1.53178 * 109.54168 * 66.11640 * 19 18 15 21 21 C 1.53280 * 109.06567 * 176.85189 * 20 19 18 22 22 O 1.42909 * 109.45725 * 302.44238 * 21 20 19 23 23 C 1.42903 * 114.09565 * 61.15990 * 22 21 20 24 24 C 1.53093 * 109.41678 * 298.83833 * 23 22 21 25 25 H 1.07997 * 119.99857 * 0.02562 * 1 2 3 26 26 H 1.07998 * 120.00097 * 180.02562 * 1 2 3 27 27 H 1.08011 * 119.99715 * 179.97438 * 2 1 3 28 28 H 1.09001 * 109.47131 * 5.00245 * 3 2 1 29 29 H 1.08998 * 109.47359 * 244.99729 * 3 2 1 30 30 H 1.09003 * 109.47590 * 191.61908 * 5 4 3 31 31 H 1.09004 * 109.46794 * 311.61746 * 5 4 3 32 32 H 0.97003 * 119.99791 * 180.02562 * 9 8 6 33 33 H 1.09001 * 109.47692 * 167.25465 * 14 4 3 34 34 H 1.09000 * 109.47143 * 47.25449 * 14 4 3 35 35 H 1.08996 * 109.46532 * 304.93364 * 17 15 14 36 36 H 1.08996 * 109.47296 * 64.93970 * 17 15 14 37 37 H 1.09003 * 109.46646 * 184.93941 * 17 15 14 38 38 H 1.09003 * 109.46700 * 307.39998 * 18 15 14 39 39 H 1.08995 * 109.47297 * 187.40679 * 18 15 14 40 40 H 1.09002 * 109.54892 * 305.93825 * 19 18 15 41 41 H 1.08999 * 109.52007 * 296.83986 * 20 19 18 42 42 H 1.09005 * 109.52512 * 57.02574 * 20 19 18 43 43 H 1.09004 * 109.45929 * 182.44967 * 21 20 19 44 44 H 1.09000 * 109.47094 * 62.44235 * 21 20 19 45 45 H 1.08999 * 109.48070 * 178.85559 * 23 22 21 46 46 H 1.08994 * 109.48963 * 58.83044 * 23 22 21 47 47 H 1.09000 * 109.52242 * 297.70813 * 24 23 22 48 48 H 1.08988 * 109.57587 * 177.54852 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9963 1.3319 1.1345 5 6 4.0599 0.3328 0.9654 6 6 4.9989 0.7785 -0.1257 7 1 4.8711 1.7472 -0.5859 8 6 6.0214 -0.0503 -0.5365 9 7 6.1768 -1.2300 0.0236 10 14 7.1857 0.5025 -1.8885 11 1 8.3402 1.2164 -1.2863 12 1 7.6732 -0.6835 -2.6375 13 1 6.4695 1.4141 -2.8166 14 6 2.2858 1.1345 2.4050 15 6 1.4922 2.3970 2.7470 16 1 0.8613 2.6699 1.9011 17 6 0.6154 2.1319 3.9726 18 6 2.4608 3.5417 3.0510 19 6 3.2081 3.9301 1.7737 20 6 2.2218 4.5247 0.7637 21 6 2.9930 4.9820 -0.4795 22 8 3.9927 5.9292 -0.0979 23 6 4.9687 5.4136 0.8097 24 6 4.2786 4.9749 2.1040 25 1 -0.5400 0.9353 -0.0004 26 1 -0.5400 -0.9353 0.0004 27 1 1.8500 -0.9354 0.0004 28 1 1.3586 2.1316 0.0896 29 1 2.6214 1.4026 -0.9313 30 1 4.6119 0.2280 1.8995 31 1 3.6178 -0.6262 0.6951 32 1 6.8964 -1.8129 -0.2652 33 1 3.0069 0.9329 3.1972 34 1 1.6029 0.2901 2.3120 35 1 -0.0135 1.2611 3.7878 36 1 1.2493 1.9451 4.8393 37 1 -0.0144 3.0009 4.1635 38 1 3.1769 3.2205 3.8075 39 1 1.9025 4.4015 3.4212 40 1 3.6810 3.0466 1.3448 41 1 1.4885 3.7689 0.4825 42 1 1.7129 5.3787 1.2109 43 1 2.3031 5.4458 -1.1845 44 1 3.4685 4.1210 -0.9492 45 1 5.7021 6.1883 1.0335 46 1 5.4702 4.5582 0.3572 47 1 3.8111 5.8379 2.5781 48 1 5.0142 4.5412 2.7812 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000430099495.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:25 Heat of formation + Delta-G solvation = -40.002634 kcal Electronic energy + Delta-G solvation = -24533.147552 eV Core-core repulsion = 21395.004703 eV Total energy + Delta-G solvation = -3138.142848 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.39129 -37.84214 -35.26348 -33.00726 -32.76752 -31.65406 -30.65115 -27.30047 -27.16804 -26.13125 -23.92979 -23.10820 -22.53586 -21.13703 -19.94467 -19.31088 -18.49217 -16.31343 -15.84766 -15.54582 -15.42030 -15.19585 -14.76336 -14.36068 -13.95872 -13.87002 -13.41476 -13.33664 -13.07986 -12.86066 -12.32914 -12.15229 -11.95864 -11.61097 -11.45460 -11.26414 -11.20102 -11.10723 -10.93875 -10.88234 -10.60539 -10.54988 -10.44157 -10.23487 -10.07635 -9.81488 -9.70095 -9.63190 -9.23623 -8.97807 -8.89845 -8.44768 -7.05672 -6.05648 -4.07110 2.69515 3.29469 3.36499 3.39429 4.28988 4.39295 4.90681 5.03761 5.18949 5.29727 5.36877 5.39550 5.43597 5.46861 5.52711 5.61684 5.72551 5.74924 5.84256 5.87536 5.91804 5.98540 6.05097 6.08013 6.15299 6.20736 6.22209 6.31085 6.36464 6.37152 6.41346 6.48431 6.56101 6.60256 6.66409 6.69487 6.84609 7.03667 7.06863 7.30815 7.33228 7.59313 7.61153 7.77919 8.06308 8.12861 8.48958 9.00760 9.57516 11.04509 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.011563 B = 0.007944 C = 0.005775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2420.928701 B = 3523.731578 C = 4847.341795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.159 4.159 3 C 0.080 3.920 4 N -0.515 5.515 5 C 0.186 3.814 6 C -0.503 4.503 7 H 0.062 0.938 8 C 0.057 3.943 9 N -0.897 5.897 10 Si 0.892 3.108 11 H -0.281 1.281 12 H -0.288 1.288 13 H -0.273 1.273 14 C 0.055 3.945 15 C -0.089 4.089 16 H 0.068 0.932 17 C -0.145 4.145 18 C -0.089 4.089 19 C -0.123 4.123 20 C -0.140 4.140 21 C 0.061 3.939 22 O -0.393 6.393 23 C 0.061 3.939 24 C -0.145 4.145 25 H 0.089 0.911 26 H 0.086 0.914 27 H 0.109 0.891 28 H 0.065 0.935 29 H 0.089 0.911 30 H 0.024 0.976 31 H 0.002 0.998 32 H 0.260 0.740 33 H 0.064 0.936 34 H 0.030 0.970 35 H 0.050 0.950 36 H 0.051 0.949 37 H 0.049 0.951 38 H 0.054 0.946 39 H 0.042 0.958 40 H 0.155 0.845 41 H 0.072 0.928 42 H 0.049 0.951 43 H 0.079 0.921 44 H 0.058 0.942 45 H 0.081 0.919 46 H 0.058 0.942 47 H 0.051 0.949 48 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.205 8.134 3.953 12.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.251 4.251 2 C -0.179 4.179 3 C -0.048 4.048 4 N -0.237 5.237 5 C 0.061 3.939 6 C -0.542 4.542 7 H 0.080 0.920 8 C -0.144 4.144 9 N -0.537 5.537 10 Si 0.720 3.280 11 H -0.207 1.207 12 H -0.214 1.214 13 H -0.198 1.198 14 C -0.073 4.073 15 C -0.108 4.108 16 H 0.087 0.913 17 C -0.203 4.203 18 C -0.127 4.127 19 C -0.141 4.141 20 C -0.177 4.177 21 C -0.016 4.016 22 O -0.312 6.312 23 C -0.016 4.016 24 C -0.182 4.182 25 H 0.107 0.893 26 H 0.104 0.896 27 H 0.127 0.873 28 H 0.083 0.917 29 H 0.107 0.893 30 H 0.042 0.958 31 H 0.020 0.980 32 H 0.070 0.930 33 H 0.083 0.917 34 H 0.048 0.952 35 H 0.069 0.931 36 H 0.070 0.930 37 H 0.068 0.932 38 H 0.073 0.927 39 H 0.060 0.940 40 H 0.172 0.828 41 H 0.090 0.910 42 H 0.068 0.932 43 H 0.098 0.902 44 H 0.076 0.924 45 H 0.099 0.901 46 H 0.076 0.924 47 H 0.070 0.930 48 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -8.834 8.622 3.900 12.946 hybrid contribution 0.269 -0.983 -0.526 1.147 sum -8.566 7.639 3.375 11.963 Atomic orbital electron populations 1.23646 0.95947 1.00741 1.04805 1.23877 0.96235 1.01458 0.96291 1.21472 0.94213 0.92444 0.96667 1.62352 1.10939 1.50605 0.99805 1.19829 0.88083 0.88802 0.97220 1.21107 1.11916 1.02278 1.18894 0.91962 1.24955 0.97775 0.94872 0.96818 1.69951 1.32197 1.08989 1.42565 0.86595 0.81297 0.78071 0.82061 1.20676 1.21418 1.19813 1.22188 0.96539 0.95230 0.93385 1.21183 0.96394 0.95941 0.97280 0.91328 1.21801 0.99357 1.00819 0.98296 1.21436 0.97273 0.96345 0.97619 1.22029 0.95469 1.01304 0.95341 1.22247 0.98833 0.99831 0.96825 1.22588 0.90163 0.92783 0.96075 1.87818 1.40154 1.38842 1.64361 1.22539 0.90365 0.98978 0.89673 1.22178 0.99292 0.99110 0.97659 0.89275 0.89569 0.87295 0.91677 0.89272 0.95761 0.98038 0.92990 0.91719 0.95182 0.93132 0.92988 0.93224 0.92736 0.93965 0.82845 0.90960 0.93222 0.90242 0.92392 0.90100 0.92376 0.92977 0.91555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -3.06 14.32 29.01 0.42 -2.64 16 2 C -0.16 -2.68 7.34 -36.03 -0.26 -2.95 16 3 C 0.08 1.38 5.28 -4.98 -0.03 1.36 16 4 N -0.52 -9.61 1.13 -237.53 -0.27 -9.88 16 5 C 0.19 4.40 4.62 -4.98 -0.02 4.37 16 6 C -0.50 -13.04 8.42 -34.44 -0.29 -13.33 16 7 H 0.06 1.60 7.68 -52.49 -0.40 1.19 16 8 C 0.06 1.55 5.46 -17.82 -0.10 1.45 16 9 N -0.90 -25.67 13.29 55.43 0.74 -24.93 16 10 Si 0.89 21.04 29.54 -169.99 -5.02 16.02 16 11 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 12 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 13 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 14 C 0.06 0.91 4.17 -3.83 -0.02 0.89 16 15 C -0.09 -1.24 2.46 -90.62 -0.22 -1.46 16 16 H 0.07 0.97 5.18 -51.93 -0.27 0.70 16 17 C -0.14 -1.73 9.19 37.16 0.34 -1.39 16 18 C -0.09 -1.26 4.13 -26.73 -0.11 -1.37 16 19 C -0.12 -1.90 1.91 -90.44 -0.17 -2.07 16 20 C -0.14 -2.01 5.01 -26.49 -0.13 -2.14 16 21 C 0.06 0.92 6.85 37.30 0.26 1.17 16 22 O -0.39 -6.51 10.77 -35.23 -0.38 -6.89 16 23 C 0.06 0.95 6.84 37.21 0.25 1.20 16 24 C -0.14 -2.15 5.42 -26.59 -0.14 -2.29 16 25 H 0.09 1.16 7.84 -52.49 -0.41 0.75 16 26 H 0.09 1.14 8.06 -52.49 -0.42 0.72 16 27 H 0.11 2.09 6.81 -52.48 -0.36 1.73 16 28 H 0.07 1.00 4.08 -51.93 -0.21 0.79 16 29 H 0.09 1.73 7.22 -51.93 -0.38 1.35 16 30 H 0.02 0.63 7.73 -51.93 -0.40 0.23 16 31 H 0.00 0.05 6.32 -51.93 -0.33 -0.28 16 32 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 33 H 0.06 1.13 7.68 -51.93 -0.40 0.73 16 34 H 0.03 0.51 6.58 -51.93 -0.34 0.17 16 35 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 37 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 38 H 0.05 0.79 8.11 -51.93 -0.42 0.37 16 39 H 0.04 0.56 8.13 -51.93 -0.42 0.14 16 40 H 0.15 2.82 4.82 -51.93 -0.25 2.57 16 41 H 0.07 1.01 4.17 -51.93 -0.22 0.79 16 42 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 43 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 44 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 45 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 46 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 47 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 48 H 0.07 0.97 8.14 -51.94 -0.42 0.55 16 LS Contribution 357.60 15.07 5.39 5.39 Total: -1.00 -26.92 357.60 -8.37 -35.29 By element: Atomic # 1 Polarization: 12.79 SS G_CDS: -8.59 Total: 4.20 kcal Atomic # 6 Polarization: -18.96 SS G_CDS: -0.23 Total: -19.20 kcal Atomic # 7 Polarization: -35.28 SS G_CDS: 0.47 Total: -34.81 kcal Atomic # 8 Polarization: -6.51 SS G_CDS: -0.38 Total: -6.89 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -26.92 -8.37 -35.29 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430099495.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.708 kcal (2) G-P(sol) polarization free energy of solvation -26.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.295 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds