Wall clock time and date at job start Tue Mar 31 2020 05:50:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50702 * 120.00296 * 2 1 4 4 N 1.46892 * 109.47170 * 123.96908 * 3 2 1 5 5 C 1.46897 * 111.00311 * 211.17224 * 4 3 2 6 6 C 1.50702 * 109.47367 * 66.04402 * 5 4 3 7 7 H 1.08000 * 119.99278 * 0.02562 * 6 5 4 8 8 C 1.37871 * 120.00245 * 179.97438 * 6 5 4 9 9 N 1.31518 * 120.00443 * 180.02562 * 8 6 5 10 10 Si 1.86804 * 119.99747 * 0.02562 * 8 6 5 11 11 H 1.48498 * 109.47304 * 89.99940 * 10 8 6 12 12 H 1.48503 * 109.46986 * 209.99798 * 10 8 6 13 13 H 1.48498 * 109.47461 * 329.99400 * 10 8 6 14 14 C 1.46907 * 110.99964 * 87.21542 * 4 3 2 15 15 C 1.52997 * 109.47092 * 287.40158 * 14 4 3 16 16 H 1.09001 * 109.47034 * 61.32643 * 15 14 4 17 17 C 1.53006 * 109.47367 * 301.32251 * 15 14 4 18 18 C 1.53002 * 109.46995 * 181.32275 * 15 14 4 19 19 C 1.52992 * 109.47207 * 294.11597 * 18 15 14 20 20 C 1.53173 * 109.54422 * 293.85187 * 19 18 15 21 21 C 1.53106 * 109.15901 * 183.24210 * 20 19 18 22 22 O 1.42907 * 109.48841 * 57.47136 * 21 20 19 23 23 C 1.42912 * 114.09511 * 298.89162 * 22 21 20 24 24 C 1.53091 * 109.41323 * 61.15925 * 23 22 21 25 25 H 1.07996 * 119.99536 * 359.97438 * 1 2 3 26 26 H 1.08000 * 120.00307 * 180.02562 * 1 2 3 27 27 H 1.08002 * 119.99934 * 180.02562 * 2 1 3 28 28 H 1.08997 * 109.46838 * 3.97260 * 3 2 1 29 29 H 1.08999 * 109.47353 * 243.97497 * 3 2 1 30 30 H 1.09000 * 109.47230 * 186.05040 * 5 4 3 31 31 H 1.09000 * 109.46873 * 306.04186 * 5 4 3 32 32 H 0.96998 * 120.00202 * 180.02562 * 9 8 6 33 33 H 1.09005 * 109.47023 * 167.40335 * 14 4 3 34 34 H 1.08998 * 109.46845 * 47.39850 * 14 4 3 35 35 H 1.08998 * 109.47245 * 175.08860 * 17 15 14 36 36 H 1.09008 * 109.46680 * 55.09165 * 17 15 14 37 37 H 1.09000 * 109.47015 * 295.09493 * 17 15 14 38 38 H 1.09003 * 109.46752 * 54.12189 * 18 15 14 39 39 H 1.09001 * 109.46745 * 174.11681 * 18 15 14 40 40 H 1.08999 * 109.54520 * 54.02714 * 19 18 15 41 41 H 1.09000 * 109.52102 * 303.05497 * 20 19 18 42 42 H 1.08998 * 109.52404 * 63.24771 * 20 19 18 43 43 H 1.09000 * 109.40265 * 297.49366 * 21 20 19 44 44 H 1.08999 * 109.49863 * 177.50842 * 21 20 19 45 45 H 1.08991 * 109.47920 * 301.17212 * 23 22 21 46 46 H 1.09005 * 109.48791 * 181.14358 * 23 22 21 47 47 H 1.08999 * 109.52044 * 182.48492 * 24 23 22 48 48 H 1.09004 * 109.57829 * 62.32672 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 7 2.9786 1.3422 1.1486 5 6 3.1606 2.7171 1.6325 6 6 1.8591 3.2285 2.1943 7 1 0.9843 2.5951 2.1924 8 6 1.7854 4.5044 2.7116 9 7 0.6497 4.9505 3.2024 10 14 3.2988 5.5995 2.7154 11 1 3.3473 6.3812 1.4538 12 1 3.2341 6.5291 3.8716 13 1 4.5180 4.7587 2.8240 14 6 4.2697 0.7268 0.8132 15 6 4.1012 -0.7907 0.7151 16 1 3.3915 -1.0270 -0.0777 17 6 3.5776 -1.3329 2.0466 18 6 5.4526 -1.4345 0.3984 19 6 5.9068 -1.0058 -0.9983 20 6 4.9543 -1.5869 -2.0477 21 6 5.4623 -1.2207 -3.4449 22 8 6.7941 -1.7112 -3.6117 23 6 7.7373 -1.1644 -2.6876 24 6 7.3220 -1.5303 -1.2603 25 1 -0.5399 0.9353 0.0004 26 1 -0.5400 -0.9353 0.0004 27 1 1.8500 -0.9353 -0.0004 28 1 1.3575 2.1323 0.0712 29 1 2.6358 1.3943 -0.9234 30 1 3.9228 2.7302 2.4116 31 1 3.4750 3.3545 0.8060 32 1 0.5978 5.8482 3.5659 33 1 4.9971 0.9621 1.5902 34 1 4.6203 1.1159 -0.1427 35 1 3.3749 -2.3995 1.9501 36 1 2.6589 -0.8113 2.3152 37 1 4.3259 -1.1740 2.8231 38 1 6.1894 -1.1135 1.1347 39 1 5.3547 -2.5196 0.4315 40 1 5.9030 0.0821 -1.0651 41 1 4.9194 -2.6717 -1.9470 42 1 3.9561 -1.1742 -1.9019 43 1 5.4571 -0.1367 -3.5595 44 1 4.8130 -1.6688 -4.1971 45 1 7.7618 -0.0798 -2.7924 46 1 8.7269 -1.5720 -2.8941 47 1 8.0153 -1.0772 -0.5518 48 1 7.3366 -2.6138 -1.1421 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000430099496.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:27 Heat of formation + Delta-G solvation = -40.341927 kcal Electronic energy + Delta-G solvation = -23442.632292 eV Core-core repulsion = 20304.474731 eV Total energy + Delta-G solvation = -3138.157561 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.76099 -38.03400 -35.63425 -33.09481 -32.94019 -31.87607 -31.23051 -27.95928 -27.40515 -26.02661 -24.12226 -23.60683 -22.92836 -20.60128 -20.32573 -19.43217 -19.06686 -16.80100 -16.36518 -16.14602 -15.54168 -15.12364 -14.86126 -14.73340 -14.25239 -14.02602 -13.64203 -13.59864 -13.23983 -12.73176 -12.68257 -12.45076 -12.37838 -11.95014 -11.82173 -11.78038 -11.48730 -11.28149 -11.10818 -10.96249 -10.89366 -10.68030 -10.47766 -10.34735 -10.27361 -10.11949 -9.82936 -9.74664 -9.55601 -9.28174 -8.80883 -8.58920 -7.35322 -6.05920 -4.02897 2.82747 3.26266 3.34542 3.36072 3.71607 4.40745 4.51512 4.58489 4.72748 4.83348 4.88120 5.05143 5.14247 5.24173 5.26733 5.28786 5.41444 5.43202 5.52117 5.55670 5.62538 5.68340 5.69897 5.80707 5.85509 5.90294 5.93282 6.00762 6.03568 6.09667 6.13349 6.28049 6.31382 6.36522 6.44308 6.52710 6.68000 6.84884 6.85319 6.95987 7.02389 7.15812 7.37038 7.60928 7.94250 8.07037 8.66139 9.04321 9.56163 11.07205 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.017863 B = 0.004431 C = 0.004050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1567.079650 B = 6317.870493 C = 6911.907324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.137 4.137 3 C 0.082 3.918 4 N -0.519 5.519 5 C 0.162 3.838 6 C -0.508 4.508 7 H 0.082 0.918 8 C 0.069 3.931 9 N -0.900 5.900 10 Si 0.874 3.126 11 H -0.278 1.278 12 H -0.286 1.286 13 H -0.268 1.268 14 C 0.058 3.942 15 C -0.094 4.094 16 H 0.078 0.922 17 C -0.138 4.138 18 C -0.107 4.107 19 C -0.093 4.093 20 C -0.150 4.150 21 C 0.059 3.941 22 O -0.386 6.386 23 C 0.060 3.940 24 C -0.150 4.150 25 H 0.096 0.904 26 H 0.087 0.913 27 H 0.107 0.893 28 H 0.091 0.909 29 H 0.029 0.971 30 H 0.028 0.972 31 H -0.019 1.019 32 H 0.263 0.737 33 H 0.063 0.937 34 H 0.023 0.977 35 H 0.037 0.963 36 H 0.079 0.921 37 H 0.045 0.955 38 H 0.061 0.939 39 H 0.060 0.940 40 H 0.074 0.926 41 H 0.069 0.931 42 H 0.078 0.922 43 H 0.049 0.951 44 H 0.091 0.909 45 H 0.048 0.952 46 H 0.090 0.910 47 H 0.071 0.929 48 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.925 -13.593 -10.418 20.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.155 4.155 3 C -0.046 4.046 4 N -0.242 5.242 5 C 0.036 3.964 6 C -0.546 4.546 7 H 0.100 0.900 8 C -0.133 4.133 9 N -0.539 5.539 10 Si 0.701 3.299 11 H -0.204 1.204 12 H -0.212 1.212 13 H -0.193 1.193 14 C -0.071 4.071 15 C -0.113 4.113 16 H 0.096 0.904 17 C -0.196 4.196 18 C -0.145 4.145 19 C -0.111 4.111 20 C -0.188 4.188 21 C -0.017 4.017 22 O -0.305 6.305 23 C -0.017 4.017 24 C -0.188 4.188 25 H 0.114 0.886 26 H 0.106 0.894 27 H 0.124 0.876 28 H 0.109 0.891 29 H 0.047 0.953 30 H 0.046 0.954 31 H -0.001 1.001 32 H 0.073 0.927 33 H 0.082 0.918 34 H 0.041 0.959 35 H 0.056 0.944 36 H 0.098 0.902 37 H 0.064 0.936 38 H 0.080 0.920 39 H 0.079 0.921 40 H 0.092 0.908 41 H 0.088 0.912 42 H 0.096 0.904 43 H 0.067 0.933 44 H 0.110 0.890 45 H 0.067 0.933 46 H 0.108 0.892 47 H 0.090 0.910 48 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 10.693 -13.810 -10.073 20.162 hybrid contribution 1.057 1.402 -0.217 1.769 sum 11.750 -12.407 -10.290 19.947 Atomic orbital electron populations 1.23754 0.96134 1.01229 1.02584 1.23217 0.95753 0.98521 0.98008 1.21253 0.96266 0.96164 0.90918 1.61853 1.09271 1.21378 1.31691 1.20207 0.98454 0.83770 0.93950 1.21050 0.95833 0.98917 1.38781 0.90002 1.24891 0.95627 0.97705 0.95042 1.69893 1.25032 1.17849 1.41121 0.86892 0.84266 0.80940 0.77787 1.20425 1.21182 1.19270 1.22255 0.92403 0.93958 0.98479 1.21392 0.95976 0.95030 0.98866 0.90427 1.21723 1.02720 0.98919 0.96211 1.21680 0.97408 1.00104 0.95300 1.21277 0.93969 1.00609 0.95295 1.22275 0.99947 1.01765 0.94799 1.22601 0.83505 0.98526 0.97092 1.87906 1.18201 1.68441 1.55986 1.22571 0.92525 0.97870 0.88715 1.22247 0.97339 1.02033 0.97182 0.88556 0.89421 0.87583 0.89076 0.95341 0.95423 1.00107 0.92700 0.91834 0.95856 0.94354 0.90238 0.93564 0.92036 0.92116 0.90756 0.91224 0.90383 0.93282 0.89042 0.93319 0.89193 0.90995 0.91190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.14 14.32 29.01 0.42 -2.73 16 2 C -0.14 -2.21 8.43 -36.03 -0.30 -2.52 16 3 C 0.08 1.52 5.16 -4.98 -0.03 1.49 16 4 N -0.52 -10.34 3.47 -237.52 -0.82 -11.16 16 5 C 0.16 3.86 3.75 -4.98 -0.02 3.84 16 6 C -0.51 -14.17 8.69 -34.44 -0.30 -14.47 16 7 H 0.08 2.50 7.74 -52.49 -0.41 2.10 16 8 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 9 N -0.90 -27.35 13.96 55.43 0.77 -26.58 16 10 Si 0.87 21.37 27.47 -169.99 -4.67 16.70 16 11 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 12 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 13 H -0.27 -6.31 6.54 56.52 0.37 -5.94 16 14 C 0.06 0.93 4.15 -3.82 -0.02 0.92 16 15 C -0.09 -1.25 1.75 -90.62 -0.16 -1.41 16 16 H 0.08 1.02 3.34 -51.93 -0.17 0.85 16 17 C -0.14 -1.96 8.67 37.16 0.32 -1.64 16 18 C -0.11 -1.18 4.14 -26.73 -0.11 -1.29 16 19 C -0.09 -0.97 2.15 -90.44 -0.19 -1.16 16 20 C -0.15 -1.52 5.13 -26.59 -0.14 -1.66 16 21 C 0.06 0.60 6.84 37.21 0.25 0.85 16 22 O -0.39 -4.39 10.77 -35.23 -0.38 -4.77 16 23 C 0.06 0.56 6.84 37.20 0.25 0.82 16 24 C -0.15 -1.39 5.43 -26.59 -0.14 -1.53 16 25 H 0.10 1.63 7.84 -52.49 -0.41 1.22 16 26 H 0.09 1.19 8.06 -52.49 -0.42 0.76 16 27 H 0.11 1.55 4.99 -52.49 -0.26 1.28 16 28 H 0.09 1.97 6.29 -51.93 -0.33 1.64 16 29 H 0.03 0.49 7.56 -51.93 -0.39 0.10 16 30 H 0.03 0.67 6.91 -51.93 -0.36 0.31 16 31 H -0.02 -0.45 7.55 -51.93 -0.39 -0.84 16 32 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 33 H 0.06 1.06 7.80 -51.93 -0.40 0.66 16 34 H 0.02 0.37 6.11 -51.93 -0.32 0.05 16 35 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.08 1.35 6.99 -51.92 -0.36 0.99 16 37 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 38 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.07 0.86 6.37 -51.93 -0.33 0.53 16 41 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.08 0.82 6.65 -51.93 -0.35 0.47 16 43 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 44 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 45 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 46 H 0.09 0.71 8.14 -51.93 -0.42 0.28 16 47 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 48 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 LS Contribution 359.40 15.07 5.42 5.42 Total: -1.00 -29.68 359.40 -8.67 -38.34 By element: Atomic # 1 Polarization: 9.39 SS G_CDS: -8.72 Total: 0.66 kcal Atomic # 6 Polarization: -18.35 SS G_CDS: -0.26 Total: -18.61 kcal Atomic # 7 Polarization: -37.69 SS G_CDS: -0.05 Total: -37.74 kcal Atomic # 8 Polarization: -4.39 SS G_CDS: -0.38 Total: -4.77 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -4.67 Total: 16.70 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -29.68 -8.67 -38.34 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430099496.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.000 kcal (2) G-P(sol) polarization free energy of solvation -29.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.341 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds