Wall clock time and date at job start Tue Mar 31 2020 05:14:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52999 * 109.47425 * 2 1 4 4 O 1.42898 * 109.47255 * 120.00190 * 2 1 3 5 5 C 1.42905 * 114.00140 * 150.00050 * 4 2 1 6 6 H 1.09005 * 112.84763 * 338.30685 * 5 4 2 7 7 C 1.53774 * 113.61811 * 109.50359 * 5 4 2 8 8 C 1.53779 * 87.08162 * 140.06426 * 7 5 4 9 9 H 1.09007 * 113.61210 * 89.20510 * 8 7 5 10 10 N 1.46905 * 113.61571 * 220.01683 * 8 7 5 11 11 C 1.46896 * 111.00026 * 255.49902 * 10 8 7 12 12 C 1.53003 * 109.46867 * 174.77387 * 11 10 8 13 13 C 1.50697 * 115.55018 * 304.86049 * 12 11 10 14 14 H 1.07999 * 119.99557 * 95.22374 * 13 12 11 15 15 C 1.37872 * 120.00433 * 275.23019 * 13 12 11 16 16 N 1.31518 * 120.00057 * 6.31942 * 15 13 12 17 17 Si 1.86800 * 120.00014 * 186.32837 * 15 13 12 18 18 H 1.48502 * 109.47264 * 359.97438 * 17 15 13 19 19 H 1.48500 * 109.46607 * 239.99578 * 17 15 13 20 20 H 1.48501 * 109.47518 * 119.99656 * 17 15 13 21 21 C 1.52999 * 117.49663 * 90.53868 * 12 11 10 22 22 C 1.53002 * 117.49763 * 159.19699 * 12 11 10 23 23 C 1.53773 * 87.08348 * 334.56840 * 8 7 5 24 24 C 1.53002 * 113.61777 * 139.97741 * 23 8 7 25 25 C 1.52999 * 113.61467 * 270.88350 * 23 8 7 26 26 H 1.09006 * 109.47041 * 299.99647 * 1 2 3 27 27 H 1.09000 * 109.47344 * 59.99452 * 1 2 3 28 28 H 1.08999 * 109.47464 * 179.97438 * 1 2 3 29 29 H 1.09006 * 109.47041 * 240.00353 * 2 1 3 30 30 H 1.09000 * 109.47307 * 300.00571 * 3 2 1 31 31 H 1.09001 * 109.47180 * 60.00123 * 3 2 1 32 32 H 1.08994 * 109.47565 * 180.02562 * 3 2 1 33 33 H 1.08999 * 113.61782 * 25.51747 * 7 5 4 34 34 H 1.08998 * 113.61556 * 254.61735 * 7 5 4 35 35 H 1.00903 * 110.99390 * 131.54581 * 10 8 7 36 36 H 1.08999 * 109.47264 * 54.77242 * 11 10 8 37 37 H 1.09005 * 109.47464 * 294.77079 * 11 10 8 38 38 H 0.97001 * 119.99410 * 5.69634 * 16 15 13 39 39 H 1.09007 * 117.49301 * 215.00134 * 21 12 11 40 40 H 1.08991 * 117.50507 * 0.02562 * 21 12 11 41 41 H 1.09001 * 117.49766 * 359.96921 * 22 12 11 42 42 H 1.08998 * 117.49852 * 144.99653 * 22 12 11 43 43 H 1.09007 * 109.46824 * 60.00114 * 24 23 8 44 44 H 1.08995 * 109.47570 * 180.02562 * 24 23 8 45 45 H 1.09004 * 109.47345 * 300.00530 * 24 23 8 46 46 H 1.09001 * 109.46957 * 59.99735 * 25 23 8 47 47 H 1.09003 * 109.46998 * 180.02562 * 25 23 8 48 48 H 1.08993 * 109.47022 * 299.99688 * 25 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6737 1.1667 5 6 3.2660 -1.3245 0.9886 6 1 3.4898 -1.5343 -0.0574 7 6 4.4221 -0.6457 1.7417 8 6 4.9283 -2.0583 2.0780 9 1 5.6078 -2.4681 1.3306 10 7 5.4417 -2.1888 3.4482 11 6 6.9100 -2.2324 3.4583 12 6 7.4102 -2.2369 4.9042 13 6 6.9218 -1.1000 5.7644 14 1 6.0531 -1.2326 6.3922 15 6 7.5838 0.1093 5.7500 16 7 8.5635 0.3124 4.8964 17 14 7.0894 1.4591 6.9429 18 1 5.9678 0.9831 7.7918 19 1 6.6588 2.6591 6.1815 20 1 8.2483 1.8083 7.8033 21 6 7.6128 -3.5958 5.5774 22 6 8.8252 -2.7594 5.1606 23 6 3.4743 -2.5324 1.9173 24 6 3.3443 -3.8813 1.2070 25 6 2.6593 -2.4591 3.2101 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0276 -0.0005 29 1 1.8933 -0.5138 -0.8901 30 1 1.6766 1.9564 -0.8899 31 1 1.6767 1.9563 0.8900 32 1 3.1299 1.4425 -0.0005 33 1 4.1008 -0.0777 2.6147 34 1 5.0948 -0.0835 1.0939 35 1 5.0527 -3.0004 3.9044 36 1 7.3031 -1.3574 2.9405 37 1 7.2502 -3.1366 2.9534 38 1 8.7661 -0.3555 4.2228 39 1 7.3927 -3.6675 6.6426 40 1 7.3902 -4.4866 4.9901 41 1 9.3995 -3.1004 4.2993 42 1 9.4027 -2.2809 5.9516 43 1 3.8742 -4.6446 1.7770 44 1 2.2911 -4.1511 1.1293 45 1 3.7752 -3.8091 0.2083 46 1 2.6283 -1.4280 3.5621 47 1 1.6447 -2.8094 3.0203 48 1 3.1245 -3.0882 3.9689 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000430727100.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:14:19 Heat of formation + Delta-G solvation = -16.136654 kcal Electronic energy + Delta-G solvation = -23489.941381 eV Core-core repulsion = 20352.833439 eV Total energy + Delta-G solvation = -3137.107942 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -40.10579 -37.48069 -36.74032 -33.03749 -31.99035 -31.68045 -30.16016 -27.30588 -27.24655 -25.57308 -24.47346 -22.72441 -21.91460 -21.30486 -21.11149 -19.27993 -18.12323 -16.77430 -16.49943 -15.29311 -15.26315 -14.83262 -14.59514 -13.98125 -13.63836 -13.57171 -13.31679 -13.07708 -12.93574 -12.67784 -12.44449 -12.33159 -12.07908 -11.97378 -11.84322 -11.79617 -11.45007 -11.26944 -11.16676 -10.88436 -10.76724 -10.66977 -10.47237 -10.37095 -10.13887 -10.01590 -10.00837 -9.33823 -9.14329 -8.40192 -8.35738 -8.13903 -7.50056 -6.15623 -3.85482 3.53485 3.57125 3.70744 3.71477 4.57522 4.64954 4.70811 4.80167 4.88362 4.98642 5.03728 5.12685 5.22843 5.28709 5.37869 5.45322 5.48632 5.51244 5.64690 5.66381 5.72168 5.75553 5.77584 5.93041 6.05449 6.07145 6.08358 6.14923 6.16468 6.18645 6.25609 6.28386 6.36811 6.44717 6.55354 6.62097 6.66679 6.72769 6.83974 6.94617 7.32918 7.38363 7.47116 7.97412 8.15968 8.47604 8.63423 9.06551 9.85254 11.22953 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.016732 B = 0.004930 C = 0.004183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1673.009005 B = 5678.645804 C = 6691.549932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.080 3.920 3 C -0.175 4.175 4 O -0.359 6.359 5 C 0.070 3.930 6 H 0.078 0.922 7 C -0.136 4.136 8 C 0.070 3.930 9 H 0.059 0.941 10 N -0.642 5.642 11 C 0.102 3.898 12 C 0.030 3.970 13 C -0.538 4.538 14 H 0.051 0.949 15 C 0.025 3.975 16 N -0.915 5.915 17 Si 1.068 2.932 18 H -0.290 1.290 19 H -0.291 1.291 20 H -0.291 1.291 21 C -0.202 4.202 22 C -0.181 4.181 23 C -0.082 4.082 24 C -0.137 4.137 25 C -0.107 4.107 26 H 0.063 0.937 27 H 0.064 0.936 28 H 0.058 0.942 29 H 0.054 0.946 30 H 0.059 0.941 31 H 0.064 0.936 32 H 0.059 0.941 33 H 0.101 0.899 34 H 0.058 0.942 35 H 0.333 0.667 36 H 0.065 0.935 37 H -0.006 1.006 38 H 0.271 0.729 39 H 0.079 0.921 40 H 0.061 0.939 41 H 0.062 0.938 42 H 0.083 0.917 43 H 0.056 0.944 44 H 0.056 0.944 45 H 0.050 0.950 46 H 0.069 0.931 47 H 0.048 0.952 48 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.780 -4.238 -11.093 17.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.022 3.978 3 C -0.232 4.232 4 O -0.278 6.278 5 C 0.012 3.988 6 H 0.096 0.904 7 C -0.175 4.175 8 C -0.041 4.041 9 H 0.077 0.923 10 N -0.272 5.272 11 C -0.027 4.027 12 C 0.029 3.971 13 C -0.576 4.576 14 H 0.070 0.930 15 C -0.179 4.179 16 N -0.551 5.551 17 Si 0.897 3.103 18 H -0.216 1.216 19 H -0.217 1.217 20 H -0.217 1.217 21 C -0.239 4.239 22 C -0.219 4.219 23 C -0.083 4.083 24 C -0.195 4.195 25 C -0.164 4.164 26 H 0.082 0.918 27 H 0.083 0.917 28 H 0.078 0.922 29 H 0.072 0.928 30 H 0.078 0.922 31 H 0.083 0.917 32 H 0.078 0.922 33 H 0.119 0.881 34 H 0.077 0.923 35 H 0.152 0.848 36 H 0.083 0.917 37 H 0.012 0.988 38 H 0.082 0.918 39 H 0.097 0.903 40 H 0.079 0.921 41 H 0.080 0.920 42 H 0.102 0.898 43 H 0.075 0.925 44 H 0.075 0.925 45 H 0.070 0.930 46 H 0.088 0.912 47 H 0.067 0.933 48 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -12.513 -2.038 -10.259 16.309 hybrid contribution 0.110 -2.428 -1.269 2.742 sum -12.403 -4.467 -11.528 17.513 Atomic orbital electron populations 1.21858 0.94099 1.02386 1.02271 1.22103 0.94629 0.92721 0.88335 1.22323 1.01917 0.96816 1.02187 1.87994 1.36237 1.69047 1.34537 1.23802 0.83927 0.93683 0.97386 0.90431 1.23542 0.95971 0.97251 1.00739 1.22769 0.92951 0.96655 0.91751 0.92316 1.60343 1.07515 1.46132 1.13234 1.21635 0.86620 0.97060 0.97391 1.19142 0.93683 0.92344 0.91889 1.21127 1.14899 0.96262 1.25353 0.93040 1.25602 0.94236 0.98721 0.99312 1.70669 1.29050 1.38146 1.17245 0.83573 0.75453 0.75632 0.75597 1.21638 1.21721 1.21732 1.22893 1.05570 0.95258 1.00181 1.22742 0.92163 1.05105 1.01877 1.22379 0.96003 0.93261 0.96650 1.21779 1.01565 0.96500 0.99615 1.21228 0.97520 1.03233 0.94466 0.91791 0.91689 0.92242 0.92768 0.92238 0.91729 0.92223 0.88067 0.92298 0.84800 0.91677 0.98812 0.91797 0.90285 0.92075 0.91982 0.89799 0.92521 0.92538 0.93043 0.91220 0.93281 0.92506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.37 9.56 37.15 0.36 -1.02 16 2 C 0.08 0.88 3.34 -26.73 -0.09 0.79 16 3 C -0.17 -1.87 9.53 37.16 0.35 -1.51 16 4 O -0.36 -4.95 9.10 -35.23 -0.32 -5.27 16 5 C 0.07 0.96 3.66 -25.92 -0.09 0.86 16 6 H 0.08 0.94 7.30 -51.93 -0.38 0.56 16 7 C -0.14 -2.23 7.36 -25.92 -0.19 -2.43 16 8 C 0.07 1.14 3.55 -66.90 -0.24 0.90 16 9 H 0.06 0.95 7.86 -51.93 -0.41 0.54 16 10 N -0.64 -12.56 5.68 -105.87 -0.60 -13.17 16 11 C 0.10 2.25 5.35 -3.82 -0.02 2.23 16 12 C 0.03 0.74 1.15 -155.66 -0.18 0.56 16 13 C -0.54 -14.86 8.53 -34.44 -0.29 -15.16 16 14 H 0.05 1.47 7.82 -52.49 -0.41 1.06 16 15 C 0.03 0.72 5.39 -17.82 -0.10 0.62 16 16 N -0.92 -27.25 13.46 55.43 0.75 -26.51 16 17 Si 1.07 25.85 29.91 -169.99 -5.08 20.76 16 18 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 19 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 20 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 21 C -0.20 -4.40 9.93 -26.69 -0.27 -4.67 16 22 C -0.18 -4.23 8.93 -26.69 -0.24 -4.47 16 23 C -0.08 -1.14 1.26 -153.70 -0.19 -1.33 16 24 C -0.14 -1.61 9.20 37.16 0.34 -1.27 16 25 C -0.11 -1.57 7.85 37.16 0.29 -1.27 16 26 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 28 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.05 0.54 7.43 -51.93 -0.39 0.16 16 30 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 31 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.10 1.92 7.65 -51.93 -0.40 1.52 16 34 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 35 H 0.33 6.24 7.15 -39.29 -0.28 5.96 16 36 H 0.06 1.59 7.47 -51.93 -0.39 1.20 16 37 H -0.01 -0.13 8.09 -51.93 -0.42 -0.55 16 38 H 0.27 8.01 6.13 -40.82 -0.25 7.76 16 39 H 0.08 1.74 8.14 -51.92 -0.42 1.31 16 40 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 41 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 42 H 0.08 2.11 8.14 -51.93 -0.42 1.69 16 43 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 44 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 45 H 0.05 0.55 7.94 -51.93 -0.41 0.14 16 46 H 0.07 1.16 7.19 -51.93 -0.37 0.78 16 47 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 48 H 0.06 0.84 6.79 -51.93 -0.35 0.49 16 LS Contribution 376.85 15.07 5.68 5.68 Total: -1.00 -29.28 376.85 -9.31 -38.59 By element: Atomic # 1 Polarization: 16.25 SS G_CDS: -9.17 Total: 7.08 kcal Atomic # 6 Polarization: -26.61 SS G_CDS: -0.56 Total: -27.17 kcal Atomic # 7 Polarization: -39.82 SS G_CDS: 0.15 Total: -39.67 kcal Atomic # 8 Polarization: -4.95 SS G_CDS: -0.32 Total: -5.27 kcal Atomic # 14 Polarization: 25.85 SS G_CDS: -5.08 Total: 20.76 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -29.28 -9.31 -38.59 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430727100.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.453 kcal (2) G-P(sol) polarization free energy of solvation -29.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.589 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds