Wall clock time and date at job start Tue Mar 31 2020 05:14:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53002 * 109.46911 * 2 1 4 4 O 1.42894 * 109.46920 * 120.00149 * 2 1 3 5 5 C 1.42905 * 113.99865 * 150.00292 * 4 2 1 6 6 H 1.09000 * 112.85044 * 21.68597 * 5 4 2 7 7 C 1.53781 * 113.61417 * 250.49210 * 5 4 2 8 8 C 1.53782 * 87.08205 * 219.93452 * 7 5 4 9 9 H 1.09003 * 113.61225 * 270.80152 * 8 7 5 10 10 N 1.46896 * 113.61454 * 139.98164 * 8 7 5 11 11 C 1.46896 * 110.99988 * 108.40537 * 10 8 7 12 12 C 1.53004 * 109.47102 * 185.52298 * 11 10 8 13 13 C 1.50703 * 115.54970 * 174.57600 * 12 11 10 14 14 H 1.08004 * 119.99416 * 213.24721 * 13 12 11 15 15 C 1.37869 * 120.00262 * 33.23958 * 13 12 11 16 16 N 1.31511 * 120.00230 * 200.77529 * 15 13 12 17 17 Si 1.86803 * 120.00153 * 20.77400 * 15 13 12 18 18 H 1.48500 * 109.47203 * 271.93673 * 17 15 13 19 19 H 1.48496 * 109.47402 * 151.93189 * 17 15 13 20 20 H 1.48503 * 109.46889 * 31.93364 * 17 15 13 21 21 C 1.53000 * 117.49785 * 320.24322 * 12 11 10 22 22 C 1.52999 * 117.49937 * 28.90159 * 12 11 10 23 23 C 1.53784 * 87.08119 * 25.43382 * 8 7 5 24 24 C 1.52993 * 113.61666 * 89.11744 * 23 8 7 25 25 C 1.53003 * 113.61265 * 220.02126 * 23 8 7 26 26 H 1.08997 * 109.47376 * 299.99892 * 1 2 3 27 27 H 1.08998 * 109.47428 * 60.00225 * 1 2 3 28 28 H 1.09007 * 109.46677 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.46716 * 240.00012 * 2 1 3 30 30 H 1.08997 * 109.47013 * 59.99885 * 3 2 1 31 31 H 1.08995 * 109.46767 * 179.97438 * 3 2 1 32 32 H 1.08998 * 109.46891 * 300.00104 * 3 2 1 33 33 H 1.09003 * 113.61588 * 105.38398 * 7 5 4 34 34 H 1.08997 * 113.69036 * 334.49353 * 7 5 4 35 35 H 1.00909 * 111.00044 * 232.35831 * 10 8 7 36 36 H 1.08997 * 109.47269 * 65.52095 * 11 10 8 37 37 H 1.08999 * 109.47160 * 305.51895 * 11 10 8 38 38 H 0.97001 * 120.00483 * 179.97438 * 16 15 13 39 39 H 1.09000 * 117.49691 * 215.00025 * 21 12 11 40 40 H 1.08997 * 117.50145 * 0.02562 * 21 12 11 41 41 H 1.09005 * 117.49982 * 359.97438 * 22 12 11 42 42 H 1.08999 * 117.49795 * 144.99478 * 22 12 11 43 43 H 1.09000 * 109.47360 * 65.37150 * 24 23 8 44 44 H 1.09001 * 109.47484 * 185.37368 * 24 23 8 45 45 H 1.09003 * 109.47276 * 305.37303 * 24 23 8 46 46 H 1.09007 * 109.47222 * 60.00062 * 25 23 8 47 47 H 1.09004 * 109.47157 * 179.97438 * 25 23 8 48 48 H 1.08994 * 109.46909 * 300.00003 * 25 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6736 1.1667 5 6 3.2660 -1.3245 0.9886 6 1 3.8399 -0.9155 0.1570 7 6 3.1700 -2.8592 0.9749 8 6 4.4695 -2.8694 1.7971 9 1 5.3724 -2.8842 1.1866 10 7 4.4843 -3.8812 2.8619 11 6 5.4032 -4.9789 2.5324 12 6 5.2894 -6.0753 3.5935 13 6 6.0822 -7.3278 3.3216 14 1 5.7039 -8.2868 3.6435 15 6 7.2902 -7.2494 2.6618 16 7 7.7842 -8.3125 2.0659 17 14 8.2254 -5.6330 2.6143 18 1 7.7723 -4.8330 1.4481 19 1 9.6799 -5.9060 2.4922 20 1 7.9672 -4.8749 3.8648 21 6 5.1421 -5.6350 5.0513 22 6 3.9449 -6.2312 4.3069 23 6 4.0779 -1.4653 2.2871 24 6 3.2157 -1.4754 3.5509 25 6 5.2589 -0.4969 2.3795 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0278 -0.0005 29 1 1.8933 -0.5139 -0.8900 30 1 1.6766 1.9563 0.8900 31 1 3.1299 1.4425 0.0005 32 1 1.6766 1.9563 -0.8900 33 1 3.2783 -3.2947 -0.0184 34 1 2.3079 -3.2489 1.5162 35 1 4.7201 -3.4669 3.7513 36 1 6.4256 -4.6018 2.5078 37 1 5.1438 -5.3894 1.5566 38 1 8.6340 -8.2573 1.6013 39 1 5.6186 -6.2512 5.8137 40 1 5.1259 -4.5642 5.2545 41 1 3.1415 -5.5523 4.0206 42 1 3.6337 -7.2396 4.5795 43 1 3.7956 -1.8744 4.3832 44 1 2.8992 -0.4586 3.7831 45 1 2.3380 -2.1006 3.3870 46 1 5.7133 -0.3830 1.3952 47 1 4.9068 0.4729 2.7312 48 1 5.9977 -0.8906 3.0774 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000430727102.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:14:24 Heat of formation + Delta-G solvation = -0.126669 kcal Electronic energy + Delta-G solvation = -23528.706157 eV Core-core repulsion = 20392.292460 eV Total energy + Delta-G solvation = -3136.413697 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.30408 -37.74165 -36.82251 -33.00327 -32.24711 -31.98968 -30.26264 -27.55926 -27.37232 -26.75244 -24.64677 -22.83181 -22.02945 -21.35333 -21.21756 -18.91738 -18.37135 -17.02531 -16.48143 -15.63407 -15.30516 -15.22535 -14.84654 -14.51493 -14.04905 -13.57202 -13.37567 -13.21672 -13.05956 -12.81248 -12.50665 -12.39685 -12.34201 -12.14616 -12.01032 -11.98974 -11.60890 -11.59637 -11.33416 -11.06444 -10.89475 -10.74744 -10.51400 -10.41964 -10.27964 -10.21056 -9.90723 -9.34161 -9.26838 -9.14815 -8.77423 -8.22820 -7.70261 -6.19912 -4.05317 3.18727 3.34573 3.39205 3.57631 4.35544 4.42272 4.51775 4.66423 4.79440 4.81348 4.85670 4.91200 5.01113 5.02746 5.25230 5.30728 5.35732 5.51080 5.52685 5.54505 5.58091 5.63673 5.68395 5.79784 5.92007 5.94298 5.97846 5.99613 6.03897 6.05660 6.08900 6.10831 6.27139 6.28882 6.43132 6.47957 6.57202 6.68727 6.78202 6.98171 7.26507 7.30791 7.37171 7.52960 7.79385 7.90573 8.53473 8.91345 9.48911 10.92857 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.024715 B = 0.004289 C = 0.004146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1132.639985 B = 6526.713620 C = 6751.365597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.078 3.922 3 C -0.174 4.174 4 O -0.360 6.360 5 C 0.071 3.929 6 H 0.081 0.919 7 C -0.139 4.139 8 C 0.067 3.933 9 H 0.069 0.931 10 N -0.667 5.667 11 C 0.084 3.916 12 C 0.013 3.987 13 C -0.487 4.487 14 H 0.077 0.923 15 C 0.079 3.921 16 N -0.883 5.883 17 Si 0.886 3.114 18 H -0.282 1.282 19 H -0.299 1.299 20 H -0.267 1.267 21 C -0.215 4.215 22 C -0.173 4.173 23 C -0.085 4.085 24 C -0.108 4.108 25 C -0.140 4.140 26 H 0.062 0.938 27 H 0.065 0.935 28 H 0.062 0.938 29 H 0.057 0.943 30 H 0.062 0.938 31 H 0.055 0.945 32 H 0.061 0.939 33 H 0.062 0.938 34 H 0.099 0.901 35 H 0.338 0.662 36 H 0.022 0.978 37 H 0.075 0.925 38 H 0.265 0.735 39 H 0.078 0.922 40 H 0.062 0.938 41 H 0.087 0.913 42 H 0.072 0.928 43 H 0.053 0.947 44 H 0.053 0.947 45 H 0.068 0.932 46 H 0.053 0.947 47 H 0.057 0.943 48 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.050 19.435 -3.763 22.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.021 3.979 3 C -0.231 4.231 4 O -0.279 6.279 5 C 0.013 3.987 6 H 0.098 0.902 7 C -0.178 4.178 8 C -0.044 4.044 9 H 0.087 0.913 10 N -0.300 5.300 11 C -0.044 4.044 12 C 0.012 3.988 13 C -0.524 4.524 14 H 0.095 0.905 15 C -0.125 4.125 16 N -0.519 5.519 17 Si 0.716 3.284 18 H -0.209 1.209 19 H -0.227 1.227 20 H -0.192 1.192 21 C -0.253 4.253 22 C -0.211 4.211 23 C -0.086 4.086 24 C -0.166 4.166 25 C -0.197 4.197 26 H 0.081 0.919 27 H 0.084 0.916 28 H 0.081 0.919 29 H 0.075 0.925 30 H 0.081 0.919 31 H 0.074 0.926 32 H 0.080 0.920 33 H 0.081 0.919 34 H 0.117 0.883 35 H 0.158 0.842 36 H 0.040 0.960 37 H 0.094 0.906 38 H 0.075 0.925 39 H 0.096 0.904 40 H 0.080 0.920 41 H 0.106 0.894 42 H 0.090 0.910 43 H 0.072 0.928 44 H 0.072 0.928 45 H 0.087 0.913 46 H 0.072 0.928 47 H 0.076 0.924 48 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -10.539 18.998 -3.931 22.078 hybrid contribution 1.759 1.235 -0.216 2.160 sum -8.779 20.233 -4.146 22.442 Atomic orbital electron populations 1.21846 0.93826 1.02745 1.02172 1.22080 0.94920 0.92245 0.88697 1.22316 1.01450 0.97111 1.02262 1.87994 1.35996 1.69292 1.34605 1.23725 0.84933 0.92798 0.97265 0.90157 1.23559 0.99361 0.94749 1.00105 1.22811 0.96904 0.90173 0.94538 0.91301 1.60691 1.54905 1.10181 1.04173 1.21935 0.91864 0.90594 0.99990 1.19319 0.96724 0.94825 0.87969 1.20372 1.03446 0.91517 1.37047 0.90531 1.24962 0.97559 0.96199 0.93770 1.70013 1.19848 1.30342 1.31680 0.86967 0.78046 0.84596 0.78744 1.20927 1.22689 1.19250 1.23081 1.04975 0.97746 0.99457 1.22717 0.92036 1.00110 1.06224 1.22422 0.95279 0.94969 0.95882 1.21239 0.99254 1.01476 0.94600 1.21791 0.97325 0.98951 1.01651 0.91915 0.91627 0.91898 0.92453 0.91903 0.92636 0.92013 0.91895 0.88295 0.84169 0.96044 0.90637 0.92492 0.90387 0.91957 0.89415 0.90976 0.92777 0.92795 0.91320 0.92832 0.92376 0.92385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.23 9.56 37.16 0.36 -0.88 16 2 C 0.08 0.75 3.22 -26.73 -0.09 0.66 16 3 C -0.17 -1.44 9.53 37.16 0.35 -1.08 16 4 O -0.36 -4.34 9.19 -35.23 -0.32 -4.66 16 5 C 0.07 0.86 3.53 -25.92 -0.09 0.77 16 6 H 0.08 0.89 7.64 -51.93 -0.40 0.49 16 7 C -0.14 -1.93 7.36 -25.92 -0.19 -2.12 16 8 C 0.07 1.01 3.59 -66.90 -0.24 0.77 16 9 H 0.07 1.11 7.82 -51.93 -0.41 0.70 16 10 N -0.67 -11.77 4.76 -105.87 -0.50 -12.27 16 11 C 0.08 1.83 4.44 -3.82 -0.02 1.81 16 12 C 0.01 0.31 1.85 -155.66 -0.29 0.02 16 13 C -0.49 -13.79 9.52 -34.44 -0.33 -14.12 16 14 H 0.08 2.35 8.06 -52.48 -0.42 1.93 16 15 C 0.08 2.25 5.35 -17.82 -0.10 2.15 16 16 N -0.88 -26.62 13.96 55.43 0.77 -25.85 16 17 Si 0.89 21.88 24.38 -169.99 -4.15 17.74 16 18 H -0.28 -6.69 6.61 56.52 0.37 -6.31 16 19 H -0.30 -7.42 7.11 56.52 0.40 -7.02 16 20 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 21 C -0.21 -4.60 9.62 -26.69 -0.26 -4.86 16 22 C -0.17 -3.70 9.61 -26.70 -0.26 -3.95 16 23 C -0.08 -1.08 1.26 -153.69 -0.19 -1.27 16 24 C -0.11 -1.38 7.64 37.15 0.28 -1.09 16 25 C -0.14 -1.61 9.20 37.16 0.34 -1.27 16 26 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.06 0.53 7.76 -51.93 -0.40 0.13 16 30 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 31 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 33 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 34 H 0.10 1.48 7.61 -51.93 -0.40 1.09 16 35 H 0.34 5.77 5.28 -39.29 -0.21 5.57 16 36 H 0.02 0.50 2.98 -51.93 -0.15 0.34 16 37 H 0.08 1.73 8.13 -51.93 -0.42 1.31 16 38 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 39 H 0.08 1.72 8.14 -51.93 -0.42 1.29 16 40 H 0.06 1.20 6.65 -51.93 -0.35 0.86 16 41 H 0.09 1.74 7.41 -51.93 -0.38 1.36 16 42 H 0.07 1.56 8.14 -51.93 -0.42 1.14 16 43 H 0.05 0.69 6.95 -51.93 -0.36 0.33 16 44 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 45 H 0.07 0.95 7.30 -51.93 -0.38 0.57 16 46 H 0.05 0.58 7.94 -51.93 -0.41 0.17 16 47 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 48 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 LS Contribution 365.93 15.07 5.51 5.51 Total: -1.00 -29.18 365.93 -8.32 -37.50 By element: Atomic # 1 Polarization: 15.42 SS G_CDS: -8.93 Total: 6.49 kcal Atomic # 6 Polarization: -23.76 SS G_CDS: -0.71 Total: -24.46 kcal Atomic # 7 Polarization: -38.39 SS G_CDS: 0.27 Total: -38.12 kcal Atomic # 8 Polarization: -4.34 SS G_CDS: -0.32 Total: -4.66 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -4.15 Total: 17.74 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -29.18 -8.32 -37.50 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430727102.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.376 kcal (2) G-P(sol) polarization free energy of solvation -29.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.502 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds