Wall clock time and date at job start Tue Mar 31 2020 05:55:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 109.47174 * 2 1 4 4 C 1.53001 * 109.47032 * 240.00581 * 2 1 3 5 5 C 1.53003 * 109.47314 * 64.99813 * 4 2 1 6 6 C 1.52996 * 109.46800 * 180.02562 * 5 4 2 7 7 C 1.52995 * 109.47326 * 60.00124 * 6 5 4 8 8 C 1.53003 * 109.46800 * 179.97438 * 6 5 4 9 9 C 1.52998 * 109.47189 * 299.99533 * 6 5 4 10 10 C 1.50700 * 109.47186 * 120.00188 * 2 1 3 11 11 O 1.21279 * 119.99474 * 83.28331 * 10 2 1 12 12 N 1.34774 * 120.00153 * 263.00761 * 10 2 1 13 13 C 1.46498 * 120.00129 * 174.59880 * 12 10 2 14 14 C 1.52997 * 109.47319 * 184.06062 * 13 12 10 15 15 C 1.50703 * 115.55157 * 294.08123 * 14 13 12 16 16 H 1.08005 * 119.99761 * 92.97826 * 15 14 13 17 17 C 1.37874 * 119.99929 * 272.98483 * 15 14 13 18 18 N 1.31510 * 120.00159 * 6.52111 * 17 15 14 19 19 Si 1.86800 * 119.99681 * 186.51620 * 17 15 14 20 20 H 1.48507 * 109.47078 * 60.00089 * 19 17 15 21 21 H 1.48502 * 109.47294 * 179.97438 * 19 17 15 22 22 H 1.48499 * 109.47367 * 300.00357 * 19 17 15 23 23 C 1.53004 * 117.49867 * 148.41076 * 14 13 12 24 24 C 1.53000 * 117.49760 * 79.75463 * 14 13 12 25 25 H 1.09006 * 109.46742 * 294.83622 * 1 2 3 26 26 H 1.08999 * 109.47162 * 54.83111 * 1 2 3 27 27 H 1.08990 * 109.47507 * 174.83475 * 1 2 3 28 28 H 1.08994 * 109.47276 * 185.00331 * 4 2 1 29 29 H 1.09005 * 109.46670 * 304.99686 * 4 2 1 30 30 H 1.09004 * 109.46822 * 300.00451 * 5 4 2 31 31 H 1.08993 * 109.46772 * 60.00026 * 5 4 2 32 32 H 1.09001 * 109.47297 * 59.99893 * 7 6 5 33 33 H 1.09006 * 109.47035 * 179.97438 * 7 6 5 34 34 H 1.08992 * 109.47191 * 299.99504 * 7 6 5 35 35 H 1.09001 * 109.46993 * 60.00253 * 8 6 5 36 36 H 1.09006 * 109.47245 * 179.97438 * 8 6 5 37 37 H 1.09001 * 109.47209 * 299.99731 * 8 6 5 38 38 H 1.09006 * 109.46950 * 60.00605 * 9 6 5 39 39 H 1.08999 * 109.47388 * 179.97438 * 9 6 5 40 40 H 1.08992 * 109.47520 * 300.00414 * 9 6 5 41 41 H 0.97001 * 119.99870 * 354.60491 * 12 10 2 42 42 H 1.08999 * 109.47067 * 304.06169 * 13 12 10 43 43 H 1.09006 * 109.46706 * 64.05972 * 13 12 10 44 44 H 0.97003 * 119.99910 * 185.02546 * 18 17 15 45 45 H 1.08992 * 117.49842 * 0.02562 * 23 14 13 46 46 H 1.09004 * 117.49443 * 145.02133 * 23 14 13 47 47 H 1.09005 * 117.49726 * 214.98332 * 24 14 13 48 48 H 1.09000 * 117.49990 * 359.97257 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2493 5 6 1.6352 0.0691 -2.4954 6 6 2.1447 -0.6524 -3.7446 7 6 1.5341 -2.0538 -3.8088 8 6 1.7393 0.1375 -4.9907 9 6 3.6694 -0.7626 -3.6837 10 6 2.0324 -0.7104 1.2304 11 8 2.1186 -1.9201 1.2393 12 7 2.3910 -0.0012 2.3189 13 6 2.7662 -0.6942 3.5538 14 6 3.0288 0.3339 4.6561 15 6 4.2177 1.2334 4.4361 16 1 4.0879 2.1924 3.9567 17 6 5.4712 0.8320 4.8469 18 7 5.6523 -0.3845 5.3127 19 14 6.9122 2.0160 4.7415 20 1 6.6295 3.2148 5.5712 21 1 8.1401 1.3470 5.2413 22 1 7.1122 2.4278 3.3289 23 6 2.7098 -0.0763 6.0952 24 6 1.8139 0.9305 5.3695 25 1 -0.3633 0.4317 0.9327 26 1 -0.3633 0.5919 -0.8401 27 1 -0.3634 -1.0234 -0.0925 28 1 3.1262 -0.7994 -1.2057 29 1 1.6053 -1.7197 -1.2952 30 1 0.5488 0.1474 -2.5389 31 1 2.0698 1.0676 -2.4493 32 1 0.4478 -1.9752 -3.8523 33 1 1.8968 -2.5677 -4.6991 34 1 1.8225 -2.6168 -2.9212 35 1 2.1740 1.1361 -4.9452 36 1 2.1026 -0.3763 -5.8808 37 1 0.6530 0.2157 -5.0339 38 1 3.9579 -1.3257 -2.7960 39 1 4.0324 -1.2771 -4.5735 40 1 4.1044 0.2357 -3.6380 41 1 2.4005 0.9682 2.2847 42 1 1.9559 -1.3560 3.8597 43 1 3.6688 -1.2806 3.3814 44 1 6.5164 -0.6436 5.6693 45 1 2.3134 -1.0786 6.2567 46 1 3.3598 0.3049 6.8829 47 1 1.8747 1.9736 5.6800 48 1 0.8276 0.5909 5.0533 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000431145467.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:35 Heat of formation + Delta-G solvation = -57.716103 kcal Electronic energy + Delta-G solvation = -22740.313581 eV Core-core repulsion = 19601.402619 eV Total energy + Delta-G solvation = -3138.910962 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.48219 -38.05968 -36.69414 -34.14728 -33.20121 -31.96604 -28.92875 -27.38029 -27.35646 -26.56362 -25.43590 -24.55299 -21.64945 -21.10732 -19.57952 -18.97119 -18.67932 -16.69070 -16.08237 -15.43295 -15.02097 -14.73075 -14.61633 -14.44879 -14.21812 -13.91432 -13.76977 -13.13773 -12.91941 -12.72910 -12.59248 -12.28855 -12.08580 -11.80622 -11.70840 -11.64373 -11.54664 -11.40222 -11.11857 -11.05853 -10.90150 -10.86141 -10.55229 -10.52057 -10.40201 -10.30356 -10.26815 -9.65540 -9.12628 -8.94983 -8.47589 -8.26739 -8.05003 -6.09233 -4.17852 3.26294 3.27151 3.32959 3.34075 3.90234 4.35644 4.63081 4.71576 4.73358 4.98989 5.13426 5.16494 5.19542 5.35220 5.40835 5.43901 5.46066 5.59877 5.63304 5.68400 5.70638 5.75078 5.79174 5.89653 5.92411 5.94835 6.02436 6.04495 6.05681 6.17841 6.24743 6.25986 6.33998 6.44580 6.46233 6.51672 6.57708 6.68804 6.90319 7.09168 7.32001 7.43969 7.48772 7.79965 8.32601 8.36283 8.83138 8.94754 9.49608 10.99204 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.018643 B = 0.003844 C = 0.003450 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1501.510206 B = 7283.239801 C = 8114.677601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.109 4.109 3 H 0.084 0.916 4 C -0.105 4.105 5 C -0.108 4.108 6 C -0.070 4.070 7 C -0.145 4.145 8 C -0.140 4.140 9 C -0.146 4.146 10 C 0.507 3.493 11 O -0.559 6.559 12 N -0.704 5.704 13 C 0.162 3.838 14 C 0.028 3.972 15 C -0.501 4.501 16 H 0.059 0.941 17 C 0.074 3.926 18 N -0.873 5.873 19 Si 0.889 3.111 20 H -0.277 1.277 21 H -0.287 1.287 22 H -0.276 1.276 23 C -0.147 4.147 24 C -0.210 4.210 25 H 0.057 0.943 26 H 0.063 0.937 27 H 0.060 0.940 28 H 0.067 0.933 29 H 0.076 0.924 30 H 0.064 0.936 31 H 0.061 0.939 32 H 0.052 0.948 33 H 0.050 0.950 34 H 0.062 0.938 35 H 0.053 0.947 36 H 0.052 0.948 37 H 0.053 0.947 38 H 0.061 0.939 39 H 0.050 0.950 40 H 0.054 0.946 41 H 0.399 0.601 42 H 0.036 0.964 43 H 0.070 0.930 44 H 0.262 0.738 45 H 0.064 0.936 46 H 0.083 0.917 47 H 0.078 0.922 48 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.579 1.892 -15.437 17.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.131 4.131 3 H 0.103 0.897 4 C -0.143 4.143 5 C -0.146 4.146 6 C -0.070 4.070 7 C -0.202 4.202 8 C -0.198 4.198 9 C -0.203 4.203 10 C 0.292 3.708 11 O -0.438 6.438 12 N -0.352 5.352 13 C 0.039 3.961 14 C 0.027 3.973 15 C -0.538 4.538 16 H 0.077 0.923 17 C -0.130 4.130 18 N -0.509 5.509 19 Si 0.716 3.284 20 H -0.202 1.202 21 H -0.213 1.213 22 H -0.202 1.202 23 C -0.185 4.185 24 C -0.248 4.248 25 H 0.076 0.924 26 H 0.082 0.918 27 H 0.079 0.921 28 H 0.086 0.914 29 H 0.094 0.906 30 H 0.083 0.917 31 H 0.080 0.920 32 H 0.072 0.928 33 H 0.069 0.931 34 H 0.081 0.919 35 H 0.072 0.928 36 H 0.071 0.929 37 H 0.072 0.928 38 H 0.080 0.920 39 H 0.069 0.931 40 H 0.073 0.927 41 H 0.233 0.767 42 H 0.054 0.946 43 H 0.088 0.912 44 H 0.072 0.928 45 H 0.083 0.917 46 H 0.102 0.898 47 H 0.096 0.904 48 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -8.353 0.863 -15.372 17.516 hybrid contribution 0.939 1.091 0.173 1.450 sum -7.414 1.954 -15.198 17.023 Atomic orbital electron populations 1.21714 0.93189 1.02558 1.02040 1.21276 0.97434 1.00453 0.93937 0.89732 1.21567 1.01481 0.99580 0.91625 1.21699 1.00819 0.98758 0.93317 1.20535 0.95761 0.95646 0.95041 1.21943 1.00391 0.95984 1.01888 1.21872 1.01028 0.99821 0.97048 1.21950 0.94659 1.01805 1.01893 1.20539 0.77856 0.87909 0.84476 1.90636 1.55345 1.14456 1.83340 1.46057 1.66436 1.10515 1.12229 1.20994 0.98209 0.94063 0.82820 1.19029 0.92917 0.95881 0.89455 1.20315 0.90284 1.02152 1.41056 0.92279 1.24964 0.98408 0.94630 0.95001 1.70006 1.24304 1.16707 1.39869 0.86726 0.81945 0.81217 0.78507 1.20248 1.21261 1.20183 1.22471 1.01700 0.96443 0.97897 1.23024 0.94498 0.98129 1.09127 0.92394 0.91771 0.92076 0.91445 0.90586 0.91744 0.92000 0.92844 0.93104 0.91895 0.92788 0.92928 0.92836 0.91958 0.93070 0.92735 0.76657 0.94599 0.91171 0.92822 0.91730 0.89803 0.90362 0.91723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.60 8.80 37.16 0.33 -1.27 16 2 C -0.11 -1.49 2.73 -91.77 -0.25 -1.74 16 3 H 0.08 1.03 8.06 -51.93 -0.42 0.61 16 4 C -0.10 -1.33 3.58 -26.73 -0.10 -1.43 16 5 C -0.11 -1.08 4.03 -26.73 -0.11 -1.19 16 6 C -0.07 -0.65 0.80 -154.51 -0.12 -0.78 16 7 C -0.14 -1.37 8.12 37.16 0.30 -1.06 16 8 C -0.14 -1.14 8.47 37.16 0.31 -0.82 16 9 C -0.15 -1.45 8.12 37.16 0.30 -1.14 16 10 C 0.51 9.44 6.80 -10.99 -0.07 9.36 16 11 O -0.56 -12.49 16.42 5.56 0.09 -12.40 16 12 N -0.70 -13.75 5.48 -60.30 -0.33 -14.08 16 13 C 0.16 3.73 5.51 -4.04 -0.02 3.70 16 14 C 0.03 0.66 1.41 -155.66 -0.22 0.44 16 15 C -0.50 -12.88 8.65 -34.44 -0.30 -13.18 16 16 H 0.06 1.49 7.82 -52.48 -0.41 1.07 16 17 C 0.07 1.97 5.38 -17.82 -0.10 1.87 16 18 N -0.87 -24.30 12.84 55.43 0.71 -23.59 16 19 Si 0.89 20.54 29.55 -169.99 -5.02 15.52 16 20 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 21 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 22 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 23 C -0.15 -3.37 9.32 -26.69 -0.25 -3.62 16 24 C -0.21 -4.37 9.96 -26.70 -0.27 -4.64 16 25 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 26 H 0.06 0.60 6.82 -51.93 -0.35 0.24 16 27 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.07 0.94 6.43 -51.93 -0.33 0.61 16 29 H 0.08 1.04 6.30 -51.93 -0.33 0.72 16 30 H 0.06 0.59 6.68 -51.93 -0.35 0.25 16 31 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.06 0.67 6.43 -51.93 -0.33 0.33 16 35 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 37 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 38 H 0.06 0.69 6.43 -51.93 -0.33 0.36 16 39 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 41 H 0.40 7.14 8.31 -40.82 -0.34 6.80 16 42 H 0.04 0.82 8.09 -51.93 -0.42 0.40 16 43 H 0.07 1.86 8.14 -51.93 -0.42 1.44 16 44 H 0.26 7.03 8.32 -40.82 -0.34 6.69 16 45 H 0.06 1.41 8.14 -51.93 -0.42 0.99 16 46 H 0.08 2.04 8.14 -51.93 -0.42 1.62 16 47 H 0.08 1.59 8.14 -51.93 -0.42 1.17 16 48 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 LS Contribution 379.10 15.07 5.71 5.71 Total: -1.00 -28.94 379.10 -8.49 -37.43 By element: Atomic # 1 Polarization: 16.00 SS G_CDS: -9.10 Total: 6.90 kcal Atomic # 6 Polarization: -14.93 SS G_CDS: -0.56 Total: -15.49 kcal Atomic # 7 Polarization: -38.05 SS G_CDS: 0.38 Total: -37.67 kcal Atomic # 8 Polarization: -12.49 SS G_CDS: 0.09 Total: -12.40 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -5.02 Total: 15.52 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -28.94 -8.49 -37.43 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000431145467.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.289 kcal (2) G-P(sol) polarization free energy of solvation -28.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.427 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds