Wall clock time and date at job start Tue Mar 31 2020 06:37:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42900 * 109.47321 * 2 1 4 4 C 1.42894 * 114.00237 * 179.97438 * 3 2 1 5 5 C 1.53000 * 109.47071 * 180.02562 * 4 3 2 6 6 H 1.08995 * 110.01865 * 53.60732 * 5 4 3 7 7 C 1.54276 * 110.03247 * 292.16623 * 5 4 3 8 8 C 1.54883 * 104.19535 * 217.10789 * 7 5 4 9 9 C 1.54962 * 102.78126 * 37.91303 * 8 7 5 10 10 C 1.53876 * 110.03177 * 175.00225 * 5 4 3 11 11 H 1.09000 * 110.03072 * 238.61613 * 10 5 4 12 12 N 1.46898 * 110.03456 * 359.97438 * 10 5 4 13 13 C 1.46897 * 110.99903 * 204.31508 * 12 10 5 14 14 H 1.09003 * 110.01412 * 326.38466 * 13 12 10 15 15 C 1.53872 * 110.07668 * 87.80780 * 13 12 10 16 16 C 1.54266 * 106.60044 * 119.30490 * 15 13 12 17 17 C 1.54893 * 104.19500 * 23.61099 * 16 15 13 18 18 H 1.09000 * 110.75571 * 80.37081 * 17 16 15 19 19 C 1.50697 * 110.75379 * 203.74545 * 17 16 15 20 20 H 1.07999 * 120.00325 * 113.32969 * 19 17 16 21 21 C 1.37880 * 119.99873 * 293.32564 * 19 17 16 22 22 N 1.31508 * 120.00183 * 180.02562 * 21 19 17 23 23 Si 1.86805 * 120.00040 * 359.97438 * 21 19 17 24 24 H 1.48500 * 109.46957 * 89.99935 * 23 21 19 25 25 H 1.48498 * 109.47338 * 210.00102 * 23 21 19 26 26 H 1.48498 * 109.46800 * 330.00161 * 23 21 19 27 27 C 1.54266 * 110.03035 * 204.99715 * 13 12 10 28 28 H 1.08999 * 109.46925 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47479 * 300.00026 * 1 2 3 30 30 H 1.09008 * 109.46982 * 60.00432 * 1 2 3 31 31 H 1.08997 * 109.47479 * 239.99974 * 2 1 3 32 32 H 1.08999 * 109.46946 * 119.99798 * 2 1 3 33 33 H 1.08998 * 109.47089 * 60.00604 * 4 3 2 34 34 H 1.09000 * 109.47291 * 299.99599 * 4 3 2 35 35 H 1.09007 * 110.48096 * 335.78590 * 7 5 4 36 36 H 1.08995 * 110.48660 * 98.29217 * 7 5 4 37 37 H 1.09005 * 110.75488 * 156.25983 * 8 7 5 38 38 H 1.09005 * 110.75672 * 279.44063 * 8 7 5 39 39 H 1.08996 * 110.53360 * 203.42689 * 9 8 7 40 40 H 1.09004 * 110.47569 * 80.76246 * 9 8 7 41 41 H 1.00897 * 111.00130 * 80.35542 * 12 10 5 42 42 H 1.09002 * 110.03208 * 238.58717 * 15 13 12 43 43 H 1.09000 * 110.03462 * 359.97114 * 15 13 12 44 44 H 1.09002 * 110.48438 * 142.28717 * 16 15 13 45 45 H 1.08998 * 110.48431 * 264.79545 * 16 15 13 46 46 H 0.97003 * 120.00681 * 180.02562 * 22 21 19 47 47 H 1.09001 * 110.48620 * 335.73478 * 27 13 12 48 48 H 1.09004 * 110.48798 * 98.37312 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4601 0.0006 5 6 3.8253 2.9384 0.0012 6 1 3.3341 3.4553 0.8255 7 6 3.4337 3.5904 -1.3411 8 6 4.5875 4.5817 -1.6327 9 6 5.8368 3.8078 -1.1412 10 6 5.3526 3.0763 0.1277 11 1 5.6027 3.6601 1.0136 12 7 5.9728 1.7472 0.2106 13 6 7.2753 1.8152 0.8865 14 1 7.7650 2.7619 0.6582 15 6 7.0894 1.6711 2.4071 16 6 7.8731 0.4113 2.8295 17 6 8.9384 0.2365 1.7187 18 1 9.7834 0.9045 1.8853 19 6 9.3963 -1.1970 1.6389 20 1 9.1692 -1.7886 0.7643 21 6 10.1055 -1.7533 2.6823 22 7 10.5056 -3.0041 2.6125 23 14 10.4991 -0.7298 4.1947 24 1 9.4050 -0.8740 5.1883 25 1 11.7751 -1.1993 4.7917 26 1 10.6300 0.6974 3.8060 27 6 8.1655 0.6380 0.4379 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 3.8340 0.9765 -0.8892 34 1 3.8332 0.9768 0.8908 35 1 3.3699 2.8373 -2.1267 36 1 2.4867 4.1215 -1.2453 37 1 4.6571 4.7900 -2.7004 38 1 4.4555 5.5049 -1.0684 39 1 6.6438 4.4991 -0.8987 40 1 6.1616 3.0901 -1.8946 41 1 6.0616 1.3319 -0.7047 42 1 7.4890 2.5478 2.9169 43 1 6.0323 1.5511 2.6444 44 1 8.3521 0.5663 3.7963 45 1 7.2121 -0.4546 2.8667 46 1 11.0041 -3.3956 3.3467 47 1 7.5522 -0.1918 0.0865 48 1 8.8578 0.9583 -0.3408 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000449447039.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:05 Heat of formation + Delta-G solvation = -71.193505 kcal Electronic energy + Delta-G solvation = -23113.123995 eV Core-core repulsion = 19973.628609 eV Total energy + Delta-G solvation = -3139.495386 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 1.70 seconds Orbital eigenvalues (eV) -39.52319 -37.78033 -36.95270 -33.43085 -31.90670 -31.78874 -29.59180 -28.43236 -27.98352 -25.67360 -24.19214 -23.36315 -22.77070 -20.93641 -19.66151 -19.38207 -18.75328 -17.06939 -16.52117 -16.02762 -15.56867 -15.53717 -15.21292 -14.73017 -14.15178 -13.81278 -13.60493 -13.38150 -12.86218 -12.72791 -12.61574 -12.45352 -12.38525 -12.10059 -11.70058 -11.53877 -11.23970 -11.13728 -10.97526 -10.87918 -10.79083 -10.62845 -10.60525 -10.41662 -10.28205 -10.04269 -9.86595 -9.62128 -9.44005 -9.34270 -8.96621 -8.50020 -8.11296 -6.03520 -4.01706 3.31932 3.40185 3.42449 3.70595 4.30645 4.45947 4.51663 4.62769 4.88899 4.98850 5.12555 5.23401 5.24904 5.31863 5.36012 5.38476 5.45319 5.50183 5.53113 5.57393 5.58691 5.69880 5.71006 5.76154 5.80620 5.82589 5.95797 5.99997 6.04512 6.09494 6.18654 6.21630 6.30684 6.36271 6.41066 6.54240 6.68527 6.72958 6.86651 6.98109 7.16798 7.33022 7.45279 7.60330 7.65170 7.83050 8.57431 9.00423 9.60032 11.09930 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.017695 B = 0.004144 C = 0.003621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1582.012792 B = 6754.831592 C = 7729.822191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.059 3.941 3 O -0.400 6.400 4 C 0.083 3.917 5 C -0.079 4.079 6 H 0.076 0.924 7 C -0.114 4.114 8 C -0.124 4.124 9 C -0.152 4.152 10 C 0.089 3.911 11 H 0.081 0.919 12 N -0.676 5.676 13 C 0.082 3.918 14 H 0.037 0.963 15 C -0.113 4.113 16 C -0.124 4.124 17 C 0.014 3.986 18 H 0.031 0.969 19 C -0.507 4.507 20 H 0.072 0.928 21 C 0.070 3.930 22 N -0.905 5.905 23 Si 0.880 3.120 24 H -0.278 1.278 25 H -0.295 1.295 26 H -0.265 1.265 27 C -0.107 4.107 28 H 0.067 0.933 29 H 0.060 0.940 30 H 0.059 0.941 31 H 0.045 0.955 32 H 0.048 0.952 33 H 0.045 0.955 34 H 0.068 0.932 35 H 0.064 0.936 36 H 0.064 0.936 37 H 0.063 0.937 38 H 0.065 0.935 39 H 0.064 0.936 40 H 0.067 0.933 41 H 0.339 0.661 42 H 0.045 0.955 43 H 0.063 0.937 44 H 0.040 0.960 45 H 0.066 0.934 46 H 0.262 0.738 47 H 0.069 0.931 48 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.765 12.958 -6.767 21.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.018 4.018 3 O -0.320 6.320 4 C 0.007 3.993 5 C -0.098 4.098 6 H 0.095 0.905 7 C -0.151 4.151 8 C -0.162 4.162 9 C -0.191 4.191 10 C -0.022 4.022 11 H 0.099 0.901 12 N -0.307 5.307 13 C -0.027 4.027 14 H 0.056 0.944 15 C -0.151 4.151 16 C -0.162 4.162 17 C -0.005 4.005 18 H 0.049 0.951 19 C -0.544 4.544 20 H 0.090 0.910 21 C -0.131 4.131 22 N -0.543 5.543 23 Si 0.709 3.291 24 H -0.204 1.204 25 H -0.222 1.222 26 H -0.190 1.190 27 C -0.145 4.145 28 H 0.086 0.914 29 H 0.079 0.921 30 H 0.078 0.922 31 H 0.063 0.937 32 H 0.066 0.934 33 H 0.063 0.937 34 H 0.086 0.914 35 H 0.083 0.917 36 H 0.083 0.917 37 H 0.081 0.919 38 H 0.084 0.916 39 H 0.082 0.918 40 H 0.086 0.914 41 H 0.159 0.841 42 H 0.064 0.936 43 H 0.082 0.918 44 H 0.059 0.941 45 H 0.084 0.916 46 H 0.072 0.928 47 H 0.088 0.912 48 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -16.116 12.778 -6.090 21.450 hybrid contribution 1.040 0.610 0.248 1.231 sum -15.076 13.388 -5.843 20.992 Atomic orbital electron populations 1.21735 0.94279 1.01954 1.02735 1.22368 0.95002 0.84247 1.00168 1.87797 1.22585 1.26012 1.95567 1.22386 0.79198 0.96216 1.01482 1.21738 0.94732 0.95175 0.98150 0.90506 1.22382 0.97855 0.98062 0.96850 1.22453 0.94966 0.98158 1.00589 1.23138 0.97938 0.99887 0.98186 1.22240 0.92837 0.89947 0.97151 0.90065 1.60853 1.24468 1.20112 1.25251 1.22279 0.87680 0.97884 0.94852 0.94449 1.22203 1.00379 0.98317 0.94237 1.22714 0.98618 0.96101 0.98786 1.20039 0.92873 0.97226 0.90347 0.95142 1.21014 1.34171 0.94704 1.04558 0.90971 1.24991 0.95184 0.94676 0.98264 1.69904 1.38765 1.12968 1.32678 0.86887 0.77341 0.81217 0.83652 1.20386 1.22184 1.19010 1.22470 0.97076 0.95899 0.99074 0.91370 0.92071 0.92184 0.93695 0.93385 0.93690 0.91380 0.91691 0.91704 0.91866 0.91643 0.91759 0.91408 0.84128 0.93625 0.91812 0.94147 0.91563 0.92781 0.91199 0.93311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.32 10.28 37.16 0.38 -0.94 16 2 C 0.06 0.64 6.66 37.16 0.25 0.89 16 3 O -0.40 -5.12 10.19 -35.23 -0.36 -5.48 16 4 C 0.08 1.03 4.22 37.16 0.16 1.19 16 5 C -0.08 -0.89 3.19 -89.50 -0.29 -1.17 16 6 H 0.08 0.90 8.14 -51.93 -0.42 0.47 16 7 C -0.11 -1.14 6.22 -25.07 -0.16 -1.29 16 8 C -0.12 -1.13 6.91 -24.70 -0.17 -1.30 16 9 C -0.15 -1.56 6.36 -25.03 -0.16 -1.72 16 10 C 0.09 1.03 3.02 -66.59 -0.20 0.83 16 11 H 0.08 1.00 7.80 -51.93 -0.41 0.59 16 12 N -0.68 -9.11 4.01 -97.40 -0.39 -9.50 16 13 C 0.08 1.31 3.06 -66.60 -0.20 1.11 16 14 H 0.04 0.58 7.78 -51.93 -0.40 0.17 16 15 C -0.11 -1.96 6.48 -25.61 -0.17 -2.13 16 16 C -0.12 -2.65 5.32 -25.07 -0.13 -2.78 16 17 C 0.01 0.33 2.27 -89.78 -0.20 0.13 16 18 H 0.03 0.73 7.02 -51.93 -0.36 0.36 16 19 C -0.51 -14.15 9.07 -34.44 -0.31 -14.47 16 20 H 0.07 2.18 8.01 -52.49 -0.42 1.76 16 21 C 0.07 2.02 5.46 -17.82 -0.10 1.92 16 22 N -0.90 -27.83 13.96 55.43 0.77 -27.05 16 23 Si 0.88 21.96 24.79 -169.99 -4.21 17.75 16 24 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 25 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 26 H -0.27 -6.34 6.45 56.52 0.36 -5.98 16 27 C -0.11 -2.04 5.66 -25.07 -0.14 -2.19 16 28 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 30 H 0.06 0.52 8.14 -51.92 -0.42 0.09 16 31 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 33 H 0.04 0.55 7.62 -51.93 -0.40 0.16 16 34 H 0.07 0.95 7.58 -51.93 -0.39 0.56 16 35 H 0.06 0.67 7.76 -51.92 -0.40 0.27 16 36 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 37 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 39 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.07 0.71 7.57 -51.93 -0.39 0.32 16 41 H 0.34 4.41 7.38 -39.29 -0.29 4.12 16 42 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 43 H 0.06 1.07 7.92 -51.93 -0.41 0.66 16 44 H 0.04 0.88 5.41 -51.93 -0.28 0.60 16 45 H 0.07 1.49 8.04 -51.93 -0.42 1.07 16 46 H 0.26 7.59 8.31 -40.82 -0.34 7.26 16 47 H 0.07 1.38 7.85 -51.93 -0.41 0.97 16 48 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 LS Contribution 361.57 15.07 5.45 5.45 Total: -1.00 -29.43 361.57 -9.42 -38.85 By element: Atomic # 1 Polarization: 11.15 SS G_CDS: -9.23 Total: 1.92 kcal Atomic # 6 Polarization: -20.48 SS G_CDS: -1.45 Total: -21.93 kcal Atomic # 7 Polarization: -36.94 SS G_CDS: 0.38 Total: -36.56 kcal Atomic # 8 Polarization: -5.12 SS G_CDS: -0.36 Total: -5.48 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -4.21 Total: 17.75 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -29.43 -9.42 -38.85 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000449447039.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.343 kcal (2) G-P(sol) polarization free energy of solvation -29.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.850 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.70 seconds