Wall clock time and date at job start Tue Mar 31 2020 06:37:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42900 * 109.47321 * 2 1 4 4 C 1.42894 * 114.00237 * 179.97438 * 3 2 1 5 5 C 1.53000 * 109.47071 * 180.02562 * 4 3 2 6 6 H 1.08995 * 110.01865 * 53.60732 * 5 4 3 7 7 C 1.54276 * 110.03247 * 292.16623 * 5 4 3 8 8 C 1.54883 * 104.19535 * 217.10789 * 7 5 4 9 9 C 1.54962 * 102.78126 * 37.91303 * 8 7 5 10 10 C 1.53876 * 110.03177 * 175.00225 * 5 4 3 11 11 H 1.09000 * 110.03072 * 238.61613 * 10 5 4 12 12 N 1.46898 * 110.03456 * 359.97438 * 10 5 4 13 13 C 1.46897 * 110.99903 * 204.31508 * 12 10 5 14 14 H 1.09003 * 110.01412 * 326.38466 * 13 12 10 15 15 C 1.53872 * 110.07668 * 87.80780 * 13 12 10 16 16 C 1.54266 * 106.60044 * 119.30490 * 15 13 12 17 17 C 1.54893 * 104.19500 * 23.61099 * 16 15 13 18 18 H 1.09000 * 110.75571 * 80.37081 * 17 16 15 19 19 C 1.50697 * 110.75379 * 203.74545 * 17 16 15 20 20 H 1.07999 * 120.00325 * 113.32969 * 19 17 16 21 21 C 1.37880 * 119.99873 * 293.32564 * 19 17 16 22 22 N 1.31508 * 120.00183 * 180.02562 * 21 19 17 23 23 Si 1.86805 * 120.00040 * 359.97438 * 21 19 17 24 24 H 1.48500 * 109.46957 * 89.99935 * 23 21 19 25 25 H 1.48498 * 109.47338 * 210.00102 * 23 21 19 26 26 H 1.48498 * 109.46800 * 330.00161 * 23 21 19 27 27 C 1.54266 * 110.03035 * 204.99715 * 13 12 10 28 28 H 1.08999 * 109.46925 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47479 * 300.00026 * 1 2 3 30 30 H 1.09008 * 109.46982 * 60.00432 * 1 2 3 31 31 H 1.08997 * 109.47479 * 239.99974 * 2 1 3 32 32 H 1.08999 * 109.46946 * 119.99798 * 2 1 3 33 33 H 1.08998 * 109.47089 * 60.00604 * 4 3 2 34 34 H 1.09000 * 109.47291 * 299.99599 * 4 3 2 35 35 H 1.09007 * 110.48096 * 335.78590 * 7 5 4 36 36 H 1.08995 * 110.48660 * 98.29217 * 7 5 4 37 37 H 1.09005 * 110.75488 * 156.25983 * 8 7 5 38 38 H 1.09005 * 110.75672 * 279.44063 * 8 7 5 39 39 H 1.08996 * 110.53360 * 203.42689 * 9 8 7 40 40 H 1.09004 * 110.47569 * 80.76246 * 9 8 7 41 41 H 1.00897 * 111.00130 * 80.35542 * 12 10 5 42 42 H 1.09002 * 110.03208 * 238.58717 * 15 13 12 43 43 H 1.09000 * 110.03462 * 359.97114 * 15 13 12 44 44 H 1.09002 * 110.48438 * 142.28717 * 16 15 13 45 45 H 1.08998 * 110.48431 * 264.79545 * 16 15 13 46 46 H 0.97003 * 120.00681 * 180.02562 * 22 21 19 47 47 H 1.09001 * 110.48620 * 335.73478 * 27 13 12 48 48 H 1.09004 * 110.48798 * 98.37312 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4601 0.0006 5 6 3.8253 2.9384 0.0012 6 1 3.3341 3.4553 0.8255 7 6 3.4337 3.5904 -1.3411 8 6 4.5875 4.5817 -1.6327 9 6 5.8368 3.8078 -1.1412 10 6 5.3526 3.0763 0.1277 11 1 5.6027 3.6601 1.0136 12 7 5.9728 1.7472 0.2106 13 6 7.2753 1.8152 0.8865 14 1 7.7650 2.7619 0.6582 15 6 7.0894 1.6711 2.4071 16 6 7.8731 0.4113 2.8295 17 6 8.9384 0.2365 1.7187 18 1 9.7834 0.9045 1.8853 19 6 9.3963 -1.1970 1.6389 20 1 9.1692 -1.7886 0.7643 21 6 10.1055 -1.7533 2.6823 22 7 10.5056 -3.0041 2.6125 23 14 10.4991 -0.7298 4.1947 24 1 9.4050 -0.8740 5.1883 25 1 11.7751 -1.1993 4.7917 26 1 10.6300 0.6974 3.8060 27 6 8.1655 0.6380 0.4379 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 3.8340 0.9765 -0.8892 34 1 3.8332 0.9768 0.8908 35 1 3.3699 2.8373 -2.1267 36 1 2.4867 4.1215 -1.2453 37 1 4.6571 4.7900 -2.7004 38 1 4.4555 5.5049 -1.0684 39 1 6.6438 4.4991 -0.8987 40 1 6.1616 3.0901 -1.8946 41 1 6.0616 1.3319 -0.7047 42 1 7.4890 2.5478 2.9169 43 1 6.0323 1.5511 2.6444 44 1 8.3521 0.5663 3.7963 45 1 7.2121 -0.4546 2.8667 46 1 11.0041 -3.3956 3.3467 47 1 7.5522 -0.1918 0.0865 48 1 8.8578 0.9583 -0.3408 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000449447039.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:01 Heat of formation + Delta-G solvation = -88.122653 kcal Electronic energy + Delta-G solvation = -23113.858098 eV Core-core repulsion = 19973.628609 eV Total energy + Delta-G solvation = -3140.229489 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 3.60 seconds Orbital eigenvalues (eV) -40.53173 -39.03646 -38.06277 -35.04332 -33.67047 -32.60165 -30.46199 -30.12028 -29.27699 -26.95307 -25.18212 -25.09322 -23.60427 -21.77667 -21.19479 -20.78536 -19.92320 -18.85681 -17.73219 -16.95083 -16.80168 -16.71275 -16.47426 -16.19352 -15.29226 -14.98887 -14.82645 -14.67245 -14.30203 -14.04591 -14.01139 -13.55822 -13.48476 -13.13203 -13.04380 -12.75147 -12.50375 -12.36965 -12.15917 -11.96987 -11.92256 -11.84236 -11.59805 -11.55742 -11.50157 -11.46102 -11.42276 -11.31810 -11.08137 -11.00322 -10.67514 -10.40728 -9.19296 -8.27750 -6.30162 1.33505 1.35571 1.46466 2.35451 2.81014 3.08050 3.25364 3.68295 3.78125 3.90248 4.01753 4.06342 4.18732 4.25451 4.33101 4.40857 4.52451 4.54510 4.57416 4.64847 4.67573 4.70285 4.75775 4.78687 4.85073 4.86014 4.94397 4.99774 5.02895 5.05600 5.07331 5.11096 5.18741 5.21561 5.25868 5.27189 5.29914 5.38671 5.46488 5.49591 5.51347 5.67639 5.80984 6.29168 6.35357 6.42012 6.54964 6.76436 7.35156 8.89401 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.017695 B = 0.004144 C = 0.003621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1582.012792 B = 6754.831592 C = 7729.822191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.051 3.949 3 O -0.411 6.411 4 C 0.088 3.912 5 C -0.076 4.076 6 H 0.074 0.926 7 C -0.109 4.109 8 C -0.116 4.116 9 C -0.149 4.149 10 C 0.091 3.909 11 H 0.081 0.919 12 N -0.680 5.680 13 C 0.097 3.903 14 H 0.055 0.945 15 C -0.105 4.105 16 C -0.123 4.123 17 C 0.006 3.994 18 H 0.031 0.969 19 C -0.511 4.511 20 H 0.030 0.970 21 C 0.010 3.990 22 N -0.954 5.954 23 Si 0.943 3.057 24 H -0.269 1.269 25 H -0.295 1.295 26 H -0.243 1.243 27 C -0.101 4.101 28 H 0.085 0.915 29 H 0.058 0.942 30 H 0.062 0.938 31 H 0.048 0.952 32 H 0.042 0.958 33 H 0.043 0.957 34 H 0.049 0.951 35 H 0.060 0.940 36 H 0.067 0.933 37 H 0.073 0.927 38 H 0.074 0.926 39 H 0.069 0.931 40 H 0.065 0.935 41 H 0.343 0.657 42 H 0.065 0.935 43 H 0.070 0.930 44 H 0.037 0.963 45 H 0.044 0.956 46 H 0.264 0.736 47 H 0.054 0.946 48 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.780 15.846 -6.656 24.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.026 4.026 3 O -0.331 6.331 4 C 0.012 3.988 5 C -0.095 4.095 6 H 0.093 0.907 7 C -0.147 4.147 8 C -0.154 4.154 9 C -0.188 4.188 10 C -0.019 4.019 11 H 0.100 0.900 12 N -0.311 5.311 13 C -0.013 4.013 14 H 0.073 0.927 15 C -0.143 4.143 16 C -0.161 4.161 17 C -0.013 4.013 18 H 0.049 0.951 19 C -0.549 4.549 20 H 0.049 0.951 21 C -0.186 4.186 22 N -0.595 5.595 23 Si 0.768 3.232 24 H -0.194 1.194 25 H -0.222 1.222 26 H -0.167 1.167 27 C -0.139 4.139 28 H 0.104 0.896 29 H 0.077 0.923 30 H 0.081 0.919 31 H 0.067 0.933 32 H 0.061 0.939 33 H 0.061 0.939 34 H 0.067 0.933 35 H 0.078 0.922 36 H 0.086 0.914 37 H 0.092 0.908 38 H 0.092 0.908 39 H 0.088 0.912 40 H 0.084 0.916 41 H 0.163 0.837 42 H 0.084 0.916 43 H 0.089 0.911 44 H 0.056 0.944 45 H 0.063 0.937 46 H 0.073 0.927 47 H 0.073 0.927 48 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -17.153 15.688 -5.997 24.006 hybrid contribution 1.315 -0.397 0.126 1.379 sum -15.838 15.291 -5.872 22.784 Atomic orbital electron populations 1.21732 0.92626 1.03136 1.02746 1.22546 0.96422 0.83508 1.00079 1.87786 1.22636 1.27124 1.95553 1.22308 0.79172 0.96950 1.00402 1.21716 0.94501 0.94358 0.98924 0.90738 1.22332 0.98470 0.98122 0.95797 1.22424 0.93655 0.97962 1.01396 1.23091 0.98566 0.99870 0.97289 1.22265 0.92757 0.88889 0.97993 0.90042 1.60777 1.23087 1.21659 1.25548 1.22031 0.88254 0.96883 0.94090 0.92690 1.22149 1.00181 0.96769 0.95202 1.22578 0.98073 0.97518 0.97913 1.20031 0.93813 0.93922 0.93518 0.95122 1.21355 1.33607 0.96970 1.02938 0.95118 1.25871 0.95255 0.95738 1.01739 1.70059 1.40379 1.15096 1.34010 0.85873 0.77154 0.80542 0.79621 1.19413 1.22190 1.16703 1.22345 0.97245 0.96876 0.97454 0.89644 0.92263 0.91913 0.93343 0.93946 0.93876 0.93299 0.92152 0.91389 0.90815 0.90770 0.91242 0.91623 0.83742 0.91627 0.91118 0.94391 0.93676 0.92719 0.92718 0.92493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.38 10.28 71.98 0.74 -1.64 16 2 C 0.05 1.07 6.66 71.98 0.48 1.55 16 3 O -0.41 -10.18 10.19 -148.98 -1.52 -11.70 16 4 C 0.09 2.11 4.22 71.98 0.30 2.41 16 5 C -0.08 -1.57 3.19 -10.07 -0.03 -1.60 16 6 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 7 C -0.11 -1.94 6.22 31.67 0.20 -1.74 16 8 C -0.12 -1.76 6.91 31.91 0.22 -1.54 16 9 C -0.15 -2.61 6.36 31.69 0.20 -2.41 16 10 C 0.09 1.89 3.02 45.64 0.14 2.02 16 11 H 0.08 1.72 7.80 -2.39 -0.02 1.71 16 12 N -0.68 -17.07 4.01 -462.08 -1.85 -18.92 16 13 C 0.10 2.86 3.06 45.64 0.14 3.00 16 14 H 0.06 1.48 7.78 -2.39 -0.02 1.46 16 15 C -0.10 -3.36 6.48 31.32 0.20 -3.16 16 16 C -0.12 -5.09 5.32 31.67 0.17 -4.92 16 17 C 0.01 0.29 2.27 -10.25 -0.02 0.27 16 18 H 0.03 1.41 7.02 -2.39 -0.02 1.40 16 19 C -0.51 -29.37 9.07 25.60 0.23 -29.14 16 20 H 0.03 1.95 8.01 -2.91 -0.02 1.93 16 21 C 0.01 0.61 5.46 84.66 0.46 1.07 16 22 N -0.95 -60.68 13.96 21.45 0.30 -60.38 16 23 Si 0.94 45.23 24.79 68.60 1.70 46.93 16 24 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 25 H -0.29 -14.07 7.11 99.48 0.71 -13.36 16 26 H -0.24 -10.74 6.45 99.48 0.64 -10.09 16 27 C -0.10 -3.78 5.66 31.67 0.18 -3.60 16 28 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 29 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 30 H 0.06 0.99 8.14 -2.38 -0.02 0.97 16 31 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 32 H 0.04 0.93 8.14 -2.39 -0.02 0.91 16 33 H 0.04 1.03 7.62 -2.39 -0.02 1.01 16 34 H 0.05 1.35 7.58 -2.39 -0.02 1.33 16 35 H 0.06 1.13 7.76 -2.38 -0.02 1.11 16 36 H 0.07 1.17 8.14 -2.39 -0.02 1.16 16 37 H 0.07 0.99 8.14 -2.38 -0.02 0.98 16 38 H 0.07 1.02 8.14 -2.38 -0.02 1.00 16 39 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 40 H 0.07 1.20 7.57 -2.38 -0.02 1.18 16 41 H 0.34 8.40 7.38 -89.70 -0.66 7.74 16 42 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 43 H 0.07 2.19 7.92 -2.39 -0.02 2.17 16 44 H 0.04 1.57 5.41 -2.39 -0.01 1.56 16 45 H 0.04 2.02 8.04 -2.39 -0.02 2.01 16 46 H 0.26 15.74 8.31 -92.71 -0.77 14.97 16 47 H 0.05 2.19 7.85 -2.39 -0.02 2.17 16 48 H 0.06 2.01 8.14 -2.38 -0.02 1.99 16 Total: -1.00 -64.74 361.57 2.41 -62.34 By element: Atomic # 1 Polarization: 20.99 SS G_CDS: 0.17 Total: 21.16 kcal Atomic # 6 Polarization: -43.03 SS G_CDS: 3.61 Total: -39.42 kcal Atomic # 7 Polarization: -77.75 SS G_CDS: -1.56 Total: -79.30 kcal Atomic # 8 Polarization: -10.18 SS G_CDS: -1.52 Total: -11.70 kcal Atomic # 14 Polarization: 45.23 SS G_CDS: 1.70 Total: 46.93 kcal Total: -64.74 2.41 -62.34 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000449447039.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.785 kcal (2) G-P(sol) polarization free energy of solvation -64.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.337 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.60 seconds