Wall clock time and date at job start Tue Mar 31 2020 06:37:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 O 1.42899 * 109.46900 * 2 1 4 4 C 1.42900 * 114.00222 * 180.02562 * 3 2 1 5 5 C 1.52994 * 109.47668 * 180.02562 * 4 3 2 6 6 H 1.09004 * 110.05341 * 306.41473 * 5 4 3 7 7 C 1.54260 * 110.03523 * 67.83017 * 5 4 3 8 8 C 1.54888 * 104.19856 * 142.89585 * 7 5 4 9 9 C 1.54890 * 102.74817 * 322.06185 * 8 7 5 10 10 C 1.53873 * 110.03346 * 185.00137 * 5 4 3 11 11 H 1.09000 * 110.07350 * 121.41082 * 10 5 4 12 12 N 1.46898 * 110.03304 * 359.97438 * 10 5 4 13 13 C 1.46897 * 110.99903 * 156.38465 * 12 10 5 14 14 H 1.09003 * 110.01412 * 326.38466 * 13 12 10 15 15 C 1.53872 * 110.07668 * 87.80780 * 13 12 10 16 16 C 1.54266 * 106.60044 * 119.30490 * 15 13 12 17 17 C 1.54893 * 104.19500 * 23.61099 * 16 15 13 18 18 H 1.09000 * 110.75571 * 80.37081 * 17 16 15 19 19 C 1.50697 * 110.75379 * 203.74545 * 17 16 15 20 20 H 1.07999 * 120.00325 * 113.32969 * 19 17 16 21 21 C 1.37880 * 119.99873 * 293.32564 * 19 17 16 22 22 N 1.31518 * 119.99845 * 0.02562 * 21 19 17 23 23 Si 1.86797 * 120.00048 * 180.02562 * 21 19 17 24 24 H 1.48500 * 109.47325 * 0.02562 * 23 21 19 25 25 H 1.48508 * 109.47278 * 119.99959 * 23 21 19 26 26 H 1.48497 * 109.47387 * 239.99920 * 23 21 19 27 27 C 1.54266 * 110.03035 * 204.99715 * 13 12 10 28 28 H 1.08997 * 109.47042 * 299.99765 * 1 2 3 29 29 H 1.08994 * 109.47043 * 60.00076 * 1 2 3 30 30 H 1.08999 * 109.46658 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47042 * 240.00235 * 2 1 3 32 32 H 1.08994 * 109.47043 * 119.99924 * 2 1 3 33 33 H 1.08998 * 109.47054 * 59.99617 * 4 3 2 34 34 H 1.09002 * 109.46783 * 300.00204 * 4 3 2 35 35 H 1.09005 * 110.48405 * 24.22051 * 7 5 4 36 36 H 1.09003 * 110.60311 * 261.63441 * 7 5 4 37 37 H 1.09002 * 110.75918 * 203.74160 * 8 7 5 38 38 H 1.09005 * 110.75223 * 80.37702 * 8 7 5 39 39 H 1.09003 * 110.48587 * 279.26098 * 9 8 7 40 40 H 1.08996 * 110.59901 * 156.66945 * 9 8 7 41 41 H 1.00902 * 110.99669 * 280.33256 * 12 10 5 42 42 H 1.09002 * 110.03208 * 238.58717 * 15 13 12 43 43 H 1.09000 * 110.03462 * 359.97114 * 15 13 12 44 44 H 1.09002 * 110.48438 * 142.28717 * 16 15 13 45 45 H 1.09001 * 110.48592 * 264.92893 * 16 15 13 46 46 H 0.97002 * 119.99577 * 180.02562 * 22 21 19 47 47 H 1.09001 * 110.48620 * 335.73478 * 27 13 12 48 48 H 1.09004 * 110.48798 * 98.37312 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4602 -0.0006 5 6 3.8254 2.9384 0.0001 6 1 3.3341 3.4568 -0.8234 7 6 3.4339 3.5893 1.3428 8 6 4.5877 4.5804 1.6353 9 6 5.8360 3.8064 1.1437 10 6 5.3527 3.0764 -0.1265 11 1 5.6034 3.6614 -1.0114 12 7 5.9729 1.7474 -0.2094 13 6 7.2827 1.8180 -0.8706 14 1 7.2726 2.5934 -1.6367 15 6 8.3818 2.1142 0.1648 16 6 9.3580 0.9203 0.1250 17 6 9.1561 0.3114 -1.2848 18 1 9.7085 0.8792 -2.0336 19 6 9.5646 -1.1390 -1.3036 20 1 8.8212 -1.9075 -1.4560 21 6 10.8874 -1.4850 -1.1262 22 7 11.7926 -0.5492 -0.9402 23 14 11.3940 -3.2828 -1.1501 24 1 10.1964 -4.1316 -1.3754 25 1 12.3720 -3.5071 -2.2449 26 1 12.0163 -3.6391 0.1502 27 6 7.6294 0.4545 -1.5035 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3632 -1.0277 -0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 3.8333 0.9768 -0.8908 34 1 3.8340 0.9765 0.8892 35 1 3.3702 2.8357 2.1278 36 1 2.4877 4.1222 1.2492 37 1 4.6574 4.7879 2.7031 38 1 4.4573 5.5028 1.0692 39 1 6.1603 3.0878 1.8965 40 1 6.6447 4.4963 0.9028 41 1 6.0515 1.3274 0.7047 42 1 8.9051 3.0333 -0.0988 43 1 7.9436 2.2061 1.1586 44 1 10.3852 1.2632 0.2489 45 1 9.1022 0.1926 0.8951 46 1 12.7233 -0.7926 -0.8158 47 1 7.0944 -0.3484 -0.9964 48 1 7.3951 0.4574 -2.5680 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000449447040.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:13 Heat of formation + Delta-G solvation = -76.121906 kcal Electronic energy + Delta-G solvation = -23033.552843 eV Core-core repulsion = 19893.843745 eV Total energy + Delta-G solvation = -3139.709098 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.49353 -37.72492 -36.76702 -33.36998 -31.79362 -31.66543 -29.55676 -27.98764 -27.65031 -25.44635 -24.19219 -23.49494 -22.77105 -20.90012 -19.51032 -19.25023 -18.88642 -16.87918 -16.24054 -16.03396 -15.72438 -15.39845 -14.60634 -14.38896 -14.14360 -13.95254 -13.46305 -13.32347 -12.90419 -12.70185 -12.50788 -12.33913 -12.03879 -11.90845 -11.53954 -11.44521 -11.13130 -11.02717 -10.96609 -10.82238 -10.73137 -10.60728 -10.54741 -10.42452 -10.37690 -9.98480 -9.75867 -9.52577 -9.43109 -9.06410 -8.75414 -8.34002 -7.94297 -5.97694 -3.99623 3.31134 3.39360 3.43472 3.72170 4.39504 4.48494 4.58644 4.72407 4.96374 4.98088 5.13765 5.27636 5.32443 5.35179 5.41414 5.48988 5.53424 5.59782 5.60079 5.65930 5.70099 5.77741 5.78237 5.82467 5.87061 5.89949 5.97647 6.06421 6.13892 6.16148 6.27160 6.32522 6.37786 6.55397 6.70756 6.77046 6.86574 7.07828 7.16298 7.34357 7.36183 7.59808 7.72561 7.75092 7.93904 8.07420 8.51024 9.03949 9.64290 11.12064 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.017613 B = 0.003924 C = 0.003330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1589.350871 B = 7134.074458 C = 8406.131890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.059 3.941 3 O -0.399 6.399 4 C 0.084 3.916 5 C -0.079 4.079 6 H 0.076 0.924 7 C -0.114 4.114 8 C -0.125 4.125 9 C -0.151 4.151 10 C 0.090 3.910 11 H 0.080 0.920 12 N -0.678 5.678 13 C 0.083 3.917 14 H 0.064 0.936 15 C -0.152 4.152 16 C -0.101 4.101 17 C 0.048 3.952 18 H 0.030 0.970 19 C -0.509 4.509 20 H 0.055 0.945 21 C 0.061 3.939 22 N -0.891 5.891 23 Si 0.887 3.113 24 H -0.273 1.273 25 H -0.285 1.285 26 H -0.285 1.285 27 C -0.102 4.102 28 H 0.059 0.941 29 H 0.060 0.940 30 H 0.067 0.933 31 H 0.047 0.953 32 H 0.045 0.955 33 H 0.068 0.932 34 H 0.045 0.955 35 H 0.064 0.936 36 H 0.063 0.937 37 H 0.062 0.938 38 H 0.064 0.936 39 H 0.067 0.933 40 H 0.065 0.935 41 H 0.340 0.660 42 H 0.047 0.953 43 H 0.046 0.954 44 H 0.061 0.939 45 H 0.044 0.956 46 H 0.258 0.742 47 H 0.060 0.940 48 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.408 7.554 4.297 19.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.018 4.018 3 O -0.319 6.319 4 C 0.007 3.993 5 C -0.099 4.099 6 H 0.095 0.905 7 C -0.151 4.151 8 C -0.163 4.163 9 C -0.190 4.190 10 C -0.021 4.021 11 H 0.098 0.902 12 N -0.307 5.307 13 C -0.026 4.026 14 H 0.083 0.917 15 C -0.191 4.191 16 C -0.139 4.139 17 C 0.029 3.971 18 H 0.048 0.952 19 C -0.547 4.547 20 H 0.074 0.926 21 C -0.140 4.140 22 N -0.530 5.530 23 Si 0.716 3.284 24 H -0.198 1.198 25 H -0.211 1.211 26 H -0.212 1.212 27 C -0.141 4.141 28 H 0.078 0.922 29 H 0.079 0.921 30 H 0.086 0.914 31 H 0.065 0.935 32 H 0.063 0.937 33 H 0.086 0.914 34 H 0.063 0.937 35 H 0.082 0.918 36 H 0.082 0.918 37 H 0.081 0.919 38 H 0.083 0.917 39 H 0.086 0.914 40 H 0.084 0.916 41 H 0.160 0.840 42 H 0.066 0.934 43 H 0.064 0.936 44 H 0.080 0.920 45 H 0.063 0.937 46 H 0.067 0.933 47 H 0.078 0.922 48 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -17.675 7.542 3.731 19.576 hybrid contribution 1.242 -0.727 0.797 1.645 sum -16.433 6.815 4.528 18.357 Atomic orbital electron populations 1.21735 0.94294 1.01915 1.02766 1.22363 0.94996 0.84326 1.00095 1.87803 1.22656 1.25925 1.95557 1.22386 0.79099 0.96348 1.01426 1.21747 0.94926 0.95050 0.98133 0.90535 1.22377 0.97847 0.98070 0.96829 1.22467 0.95124 0.98163 1.00554 1.23176 0.97766 0.99853 0.98228 1.22255 0.92588 0.90048 0.97214 0.90182 1.60881 1.24176 1.19514 1.26150 1.22387 0.85816 0.99136 0.95248 0.91730 1.22989 0.98587 1.00123 0.97424 1.22281 0.97320 0.93934 1.00377 1.19584 0.89104 0.95771 0.92611 0.95190 1.21184 0.92785 0.91991 1.48748 0.92644 1.24992 0.96789 0.96986 0.95274 1.69976 1.01444 1.31940 1.49649 0.86611 0.78552 0.85783 0.77489 1.19797 1.21127 1.21163 1.22444 0.99362 0.94133 0.98113 0.92156 0.92071 0.91411 0.93459 0.93721 0.91423 0.93711 0.91763 0.91780 0.91916 0.91681 0.91402 0.91639 0.84018 0.93388 0.93566 0.92016 0.93671 0.93255 0.92154 0.93667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.30 10.28 37.16 0.38 -0.92 16 2 C 0.06 0.63 6.66 37.16 0.25 0.88 16 3 O -0.40 -5.14 10.19 -35.23 -0.36 -5.50 16 4 C 0.08 1.06 4.22 37.15 0.16 1.21 16 5 C -0.08 -0.93 3.19 -89.51 -0.29 -1.21 16 6 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 7 C -0.11 -1.20 6.22 -25.08 -0.16 -1.36 16 8 C -0.13 -1.24 6.91 -24.74 -0.17 -1.41 16 9 C -0.15 -1.72 5.34 -25.07 -0.13 -1.85 16 10 C 0.09 1.11 3.21 -66.60 -0.21 0.89 16 11 H 0.08 1.02 7.46 -51.93 -0.39 0.63 16 12 N -0.68 -9.71 4.11 -97.41 -0.40 -10.11 16 13 C 0.08 1.42 3.23 -66.60 -0.22 1.21 16 14 H 0.06 1.08 7.45 -51.93 -0.39 0.70 16 15 C -0.15 -2.74 5.94 -25.61 -0.15 -2.89 16 16 C -0.10 -2.30 5.75 -25.07 -0.14 -2.44 16 17 C 0.05 1.18 2.73 -89.78 -0.24 0.94 16 18 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 19 C -0.51 -13.95 8.49 -34.44 -0.29 -14.25 16 20 H 0.06 1.51 7.77 -52.49 -0.41 1.11 16 21 C 0.06 1.69 5.36 -17.82 -0.10 1.60 16 22 N -0.89 -25.72 12.41 55.43 0.69 -25.03 16 23 Si 0.89 21.37 29.54 -169.99 -5.02 16.35 16 24 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 25 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 26 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 27 C -0.10 -2.09 5.95 -25.07 -0.15 -2.24 16 28 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 29 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.04 0.46 8.14 -51.93 -0.42 0.03 16 33 H 0.07 0.95 7.58 -51.93 -0.39 0.55 16 34 H 0.04 0.57 7.60 -51.93 -0.39 0.17 16 35 H 0.06 0.70 7.76 -51.93 -0.40 0.30 16 36 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 37 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 39 H 0.07 0.81 6.81 -51.93 -0.35 0.46 16 40 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 41 H 0.34 4.91 7.19 -39.29 -0.28 4.62 16 42 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 43 H 0.05 0.75 6.14 -51.93 -0.32 0.44 16 44 H 0.06 1.55 7.63 -51.93 -0.40 1.15 16 45 H 0.04 1.06 8.04 -51.93 -0.42 0.64 16 46 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 47 H 0.06 1.26 7.94 -51.93 -0.41 0.85 16 48 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 LS Contribution 364.60 15.07 5.49 5.49 Total: -1.00 -27.89 364.60 -10.25 -38.14 By element: Atomic # 1 Polarization: 11.68 SS G_CDS: -9.19 Total: 2.50 kcal Atomic # 6 Polarization: -20.38 SS G_CDS: -1.47 Total: -21.84 kcal Atomic # 7 Polarization: -35.44 SS G_CDS: 0.29 Total: -35.15 kcal Atomic # 8 Polarization: -5.14 SS G_CDS: -0.36 Total: -5.50 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -27.89 -10.25 -38.14 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000449447040.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.980 kcal (2) G-P(sol) polarization free energy of solvation -27.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.142 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds