Wall clock time and date at job start Tue Mar 31 2020 06:37:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.42899 * 109.47210 * 2 1 4 4 C 1.42896 * 114.00224 * 179.97438 * 3 2 1 5 5 C 1.52998 * 109.47346 * 180.02562 * 4 3 2 6 6 H 1.09004 * 110.01727 * 306.39359 * 5 4 3 7 7 C 1.54265 * 110.03114 * 67.83391 * 5 4 3 8 8 C 1.54888 * 104.19640 * 142.89550 * 7 5 4 9 9 C 1.55018 * 102.75657 * 322.04895 * 8 7 5 10 10 C 1.53875 * 110.03307 * 185.00176 * 5 4 3 11 11 H 1.08998 * 110.03080 * 0.05173 * 10 5 4 12 12 N 1.46900 * 110.03059 * 121.43166 * 10 5 4 13 13 C 1.46900 * 111.00006 * 204.30840 * 12 10 5 14 14 H 1.09002 * 110.01632 * 325.70236 * 13 12 10 15 15 C 1.53873 * 110.03223 * 87.09116 * 13 12 10 16 16 C 1.54269 * 106.59646 * 119.33513 * 15 13 12 17 17 C 1.54882 * 104.19831 * 23.61137 * 16 15 13 18 18 H 1.08994 * 110.75597 * 80.55637 * 17 16 15 19 19 C 1.50702 * 110.75854 * 203.74430 * 17 16 15 20 20 H 1.08003 * 120.00527 * 118.54176 * 19 17 16 21 21 C 1.37878 * 119.99656 * 298.54724 * 19 17 16 22 22 N 1.31514 * 120.00160 * 359.97438 * 21 19 17 23 23 Si 1.86805 * 119.99758 * 179.97438 * 21 19 17 24 24 H 1.48494 * 109.47200 * 0.02562 * 23 21 19 25 25 H 1.48506 * 109.46832 * 119.99800 * 23 21 19 26 26 H 1.48498 * 109.47104 * 239.99860 * 23 21 19 27 27 C 1.54273 * 110.07457 * 204.28180 * 13 12 10 28 28 H 1.08998 * 109.46613 * 299.99524 * 1 2 3 29 29 H 1.08996 * 109.46792 * 59.99753 * 1 2 3 30 30 H 1.08997 * 109.46549 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.46975 * 239.99835 * 2 1 3 32 32 H 1.09002 * 109.47447 * 120.00077 * 2 1 3 33 33 H 1.09003 * 109.47044 * 60.00378 * 4 3 2 34 34 H 1.09001 * 109.47382 * 300.00490 * 4 3 2 35 35 H 1.09003 * 110.48711 * 261.57435 * 7 5 4 36 36 H 1.08999 * 110.49010 * 24.08831 * 7 5 4 37 37 H 1.09005 * 110.75285 * 80.37173 * 8 7 5 38 38 H 1.08998 * 110.76093 * 203.55677 * 8 7 5 39 39 H 1.08998 * 110.50138 * 279.29442 * 9 8 7 40 40 H 1.08999 * 110.52417 * 156.61296 * 9 8 7 41 41 H 1.00899 * 111.00490 * 328.26268 * 12 10 5 42 42 H 1.08996 * 110.03511 * 238.61751 * 15 13 12 43 43 H 1.09002 * 110.03347 * 0.04826 * 15 13 12 44 44 H 1.09000 * 110.48429 * 142.29450 * 16 15 13 45 45 H 1.09001 * 110.48672 * 264.92943 * 16 15 13 46 46 H 0.97004 * 120.00181 * 179.97438 * 22 21 19 47 47 H 1.09001 * 110.48533 * 335.76457 * 27 13 12 48 48 H 1.08999 * 110.48202 * 98.40384 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4309 1.4601 0.0006 5 6 3.8254 2.9384 0.0012 6 1 3.3348 3.4558 -0.8233 7 6 3.4328 3.5895 1.3434 8 6 4.5864 4.5807 1.6366 9 6 5.8363 3.8060 1.1461 10 6 5.3528 3.0763 -0.1242 11 1 5.8129 2.0902 -0.1864 12 7 5.6906 3.8649 -1.3167 13 6 7.0448 3.5492 -1.7904 14 1 7.6946 3.3296 -0.9433 15 6 7.0012 2.3451 -2.7474 16 6 7.5440 2.8403 -4.1038 17 6 8.4198 4.0644 -3.7385 18 1 9.4007 3.7460 -3.3855 19 6 8.5545 4.9953 -4.9159 20 1 8.1873 6.0087 -4.8479 21 6 9.1464 4.5532 -6.0800 22 7 9.5940 3.3194 -6.1627 23 14 9.3127 5.7070 -7.5398 24 1 8.7353 7.0304 -7.1930 25 1 10.7488 5.8684 -7.8820 26 1 8.5870 5.1394 -8.7044 27 6 7.6127 4.7342 -2.5988 28 1 -0.3632 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3632 -1.0277 -0.0005 31 1 1.8934 -0.5139 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 3.8340 0.9765 -0.8892 34 1 3.8334 0.9767 0.8908 35 1 2.4870 4.1227 1.2466 36 1 3.3662 2.8359 2.1281 37 1 4.4565 5.5029 1.0701 38 1 4.6532 4.7910 2.7040 39 1 6.1597 3.0873 1.8991 40 1 6.6440 4.4970 0.9051 41 1 5.0098 3.7243 -2.0481 42 1 7.6298 1.5411 -2.3648 43 1 5.9750 1.9954 -2.8610 44 1 8.1481 2.0670 -4.5782 45 1 6.7240 3.1392 -4.7568 46 1 10.0101 3.0082 -6.9818 47 1 6.8037 5.3390 -3.0086 48 1 8.2669 5.3430 -1.9747 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000449447041.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:16 Heat of formation + Delta-G solvation = -79.411694 kcal Electronic energy + Delta-G solvation = -22780.041471 eV Core-core repulsion = 19640.189717 eV Total energy + Delta-G solvation = -3139.851754 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.41577 -37.90687 -36.82140 -33.34715 -31.94133 -31.58127 -29.66380 -28.04999 -27.58372 -25.93734 -24.05380 -23.27301 -22.99347 -20.71741 -19.72203 -19.00338 -18.92389 -17.06616 -16.29216 -16.26930 -15.79405 -15.39965 -14.68200 -14.49810 -14.35050 -13.86663 -13.65776 -13.46155 -12.81652 -12.67567 -12.52082 -12.33997 -12.02726 -11.73803 -11.57661 -11.40261 -11.25052 -10.97318 -10.92962 -10.82800 -10.74660 -10.70155 -10.55179 -10.52085 -10.41753 -9.98976 -9.74426 -9.74129 -9.48382 -9.04401 -8.71881 -8.32474 -7.90845 -5.95530 -3.97784 3.32685 3.40749 3.43913 3.45413 4.45086 4.51732 4.60116 4.64255 4.78920 4.86696 4.98818 5.11451 5.21663 5.26475 5.33124 5.36124 5.44757 5.50893 5.54026 5.62229 5.64804 5.66721 5.73464 5.82031 5.84552 5.86392 5.98160 6.03981 6.04497 6.19537 6.30458 6.37284 6.43729 6.56329 6.73468 6.80267 6.89312 7.04298 7.11644 7.21442 7.39484 7.64890 7.77214 7.81550 7.97398 8.10113 8.52763 9.05297 9.66120 11.13670 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.021075 B = 0.003415 C = 0.003123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1328.273228 B = 8197.811353 C = 8962.390971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.056 3.944 3 O -0.387 6.387 4 C 0.069 3.931 5 C -0.092 4.092 6 H 0.087 0.913 7 C -0.108 4.108 8 C -0.119 4.119 9 C -0.113 4.113 10 C 0.090 3.910 11 H 0.043 0.957 12 N -0.675 5.675 13 C 0.083 3.917 14 H 0.065 0.935 15 C -0.154 4.154 16 C -0.097 4.097 17 C 0.047 3.953 18 H 0.027 0.973 19 C -0.508 4.508 20 H 0.056 0.944 21 C 0.060 3.940 22 N -0.892 5.892 23 Si 0.888 3.112 24 H -0.273 1.273 25 H -0.285 1.285 26 H -0.285 1.285 27 C -0.101 4.101 28 H 0.062 0.938 29 H 0.063 0.937 30 H 0.069 0.931 31 H 0.047 0.953 32 H 0.045 0.955 33 H 0.047 0.953 34 H 0.048 0.952 35 H 0.064 0.936 36 H 0.061 0.939 37 H 0.071 0.929 38 H 0.059 0.941 39 H 0.058 0.942 40 H 0.075 0.925 41 H 0.340 0.660 42 H 0.047 0.953 43 H 0.042 0.958 44 H 0.065 0.935 45 H 0.045 0.955 46 H 0.257 0.743 47 H 0.061 0.939 48 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.793 -5.697 15.205 21.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.021 4.021 3 O -0.306 6.306 4 C -0.007 4.007 5 C -0.111 4.111 6 H 0.105 0.895 7 C -0.146 4.146 8 C -0.157 4.157 9 C -0.151 4.151 10 C -0.021 4.021 11 H 0.061 0.939 12 N -0.306 5.306 13 C -0.026 4.026 14 H 0.083 0.917 15 C -0.193 4.193 16 C -0.135 4.135 17 C 0.028 3.972 18 H 0.045 0.955 19 C -0.547 4.547 20 H 0.074 0.926 21 C -0.141 4.141 22 N -0.531 5.531 23 Si 0.716 3.284 24 H -0.198 1.198 25 H -0.212 1.212 26 H -0.212 1.212 27 C -0.139 4.139 28 H 0.081 0.919 29 H 0.082 0.918 30 H 0.087 0.913 31 H 0.065 0.935 32 H 0.064 0.936 33 H 0.065 0.935 34 H 0.066 0.934 35 H 0.083 0.917 36 H 0.080 0.920 37 H 0.090 0.910 38 H 0.078 0.922 39 H 0.077 0.923 40 H 0.094 0.906 41 H 0.159 0.841 42 H 0.066 0.934 43 H 0.061 0.939 44 H 0.084 0.916 45 H 0.064 0.936 46 H 0.067 0.933 47 H 0.080 0.920 48 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -13.634 -5.111 15.445 21.226 hybrid contribution 0.187 -0.792 -1.352 1.578 sum -13.446 -5.903 14.093 20.353 Atomic orbital electron populations 1.21734 0.93821 1.02100 1.03124 1.22440 0.95546 0.84116 0.99952 1.87887 1.21283 1.26058 1.95399 1.22663 0.81013 0.97111 0.99941 1.21974 0.95459 0.93813 0.99855 0.89501 1.22286 0.98433 0.98105 0.95742 1.22465 0.94532 0.98639 1.00041 1.22402 0.98258 0.98983 0.95482 1.22058 0.92643 0.94977 0.92388 0.93899 1.60845 1.04162 1.57868 1.07731 1.22367 0.88612 0.95570 0.96079 0.91713 1.22979 0.99159 0.97634 0.99537 1.22236 0.98774 1.00003 0.92535 1.19587 0.93354 0.92253 0.91963 0.95515 1.21192 1.38067 0.97931 0.97483 0.92608 1.24988 0.95447 0.95044 0.98587 1.69976 1.40341 1.15703 1.27039 0.86602 0.77623 0.81300 0.82872 1.19775 1.21158 1.21167 1.22429 0.98907 0.95705 0.96885 0.91923 0.91807 0.91251 0.93490 0.93644 0.93487 0.93391 0.91689 0.92037 0.90992 0.92242 0.92295 0.90610 0.84098 0.93437 0.93940 0.91639 0.93634 0.93288 0.91990 0.93692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.15 10.28 37.16 0.38 -0.76 16 2 C 0.06 0.51 6.66 37.16 0.25 0.76 16 3 O -0.39 -4.54 10.19 -35.23 -0.36 -4.90 16 4 C 0.07 0.77 4.98 37.16 0.19 0.96 16 5 C -0.09 -1.08 2.87 -89.50 -0.26 -1.33 16 6 H 0.09 1.11 7.48 -51.93 -0.39 0.72 16 7 C -0.11 -1.16 6.22 -25.07 -0.16 -1.31 16 8 C -0.12 -1.29 6.91 -24.67 -0.17 -1.46 16 9 C -0.11 -1.35 6.40 -25.00 -0.16 -1.51 16 10 C 0.09 1.15 2.71 -66.59 -0.18 0.97 16 11 H 0.04 0.57 7.31 -51.93 -0.38 0.19 16 12 N -0.67 -10.27 5.96 -97.40 -0.58 -10.85 16 13 C 0.08 1.47 3.02 -66.59 -0.20 1.27 16 14 H 0.06 1.12 7.78 -51.93 -0.40 0.72 16 15 C -0.15 -2.87 6.32 -25.61 -0.16 -3.04 16 16 C -0.10 -2.27 5.57 -25.07 -0.14 -2.41 16 17 C 0.05 1.18 2.82 -89.78 -0.25 0.92 16 18 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 19 C -0.51 -14.09 8.54 -34.44 -0.29 -14.38 16 20 H 0.06 1.54 7.78 -52.48 -0.41 1.13 16 21 C 0.06 1.69 5.33 -17.82 -0.10 1.60 16 22 N -0.89 -25.81 12.02 55.43 0.67 -25.14 16 23 Si 0.89 21.53 29.54 -169.99 -5.02 16.51 16 24 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 25 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 26 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 27 C -0.10 -2.12 5.95 -25.07 -0.15 -2.27 16 28 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 34 H 0.05 0.49 8.00 -51.93 -0.42 0.07 16 35 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 36 H 0.06 0.63 7.76 -51.93 -0.40 0.22 16 37 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 38 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 39 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 40 H 0.08 1.02 8.01 -51.93 -0.42 0.60 16 41 H 0.34 5.21 7.47 -39.29 -0.29 4.92 16 42 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 43 H 0.04 0.73 7.58 -51.93 -0.39 0.33 16 44 H 0.06 1.68 7.37 -51.93 -0.38 1.29 16 45 H 0.04 1.10 8.04 -51.93 -0.42 0.69 16 46 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 47 H 0.06 1.34 7.95 -51.93 -0.41 0.93 16 48 H 0.04 0.92 8.14 -51.93 -0.42 0.49 16 LS Contribution 370.33 15.07 5.58 5.58 Total: -1.00 -28.38 370.33 -10.46 -38.85 By element: Atomic # 1 Polarization: 11.29 SS G_CDS: -9.35 Total: 1.95 kcal Atomic # 6 Polarization: -20.60 SS G_CDS: -1.40 Total: -22.00 kcal Atomic # 7 Polarization: -36.08 SS G_CDS: 0.09 Total: -35.99 kcal Atomic # 8 Polarization: -4.54 SS G_CDS: -0.36 Total: -4.90 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -28.38 -10.46 -38.85 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000449447041.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.567 kcal (2) G-P(sol) polarization free energy of solvation -28.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.845 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds