Wall clock time and date at job start Tue Mar 31 2020 06:37:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42907 * 109.47200 * 2 1 4 4 C 1.42893 * 114.00066 * 180.02562 * 3 2 1 5 5 C 1.52994 * 109.47212 * 179.97438 * 4 3 2 6 6 H 1.09006 * 110.53739 * 52.39404 * 5 4 3 7 7 C 1.54887 * 110.48962 * 289.77815 * 5 4 3 8 8 C 1.54885 * 102.75044 * 203.37671 * 7 5 4 9 9 C 1.54264 * 104.19612 * 37.94082 * 8 7 5 10 10 C 1.53875 * 106.60168 * 336.39084 * 9 8 7 11 11 H 1.08997 * 110.07310 * 119.30380 * 10 9 8 12 12 N 1.46897 * 110.03439 * 240.71849 * 10 9 8 13 13 C 1.46901 * 110.99865 * 272.16378 * 12 10 9 14 14 H 1.09004 * 110.43336 * 323.90950 * 13 12 10 15 15 C 1.54268 * 110.48757 * 86.44936 * 13 12 10 16 16 C 1.53880 * 106.59650 * 142.42187 * 15 13 12 17 17 C 1.54265 * 106.59959 * 0.02562 * 16 15 13 18 18 H 1.09003 * 110.48675 * 95.20047 * 17 16 15 19 19 C 1.50701 * 110.49026 * 217.70987 * 17 16 15 20 20 H 1.08002 * 119.99761 * 118.54174 * 19 17 16 21 21 C 1.37871 * 119.99694 * 298.82737 * 19 17 16 22 22 N 1.31514 * 120.00482 * 359.71466 * 21 19 17 23 23 Si 1.86801 * 119.99746 * 179.72062 * 21 19 17 24 24 H 1.48494 * 109.47230 * 359.97438 * 23 21 19 25 25 H 1.48505 * 109.47301 * 119.99669 * 23 21 19 26 26 H 1.48498 * 109.47430 * 239.99516 * 23 21 19 27 27 C 1.54887 * 104.19682 * 336.39067 * 17 16 15 28 28 H 1.09003 * 109.47128 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47108 * 299.99904 * 1 2 3 30 30 H 1.08994 * 109.47535 * 59.99776 * 1 2 3 31 31 H 1.09000 * 109.47108 * 240.00096 * 2 1 3 32 32 H 1.08994 * 109.47535 * 120.00224 * 2 1 3 33 33 H 1.09004 * 109.46925 * 59.99983 * 4 3 2 34 34 H 1.08999 * 109.47694 * 300.00269 * 4 3 2 35 35 H 1.09003 * 110.75466 * 321.69027 * 7 5 4 36 36 H 1.09001 * 110.75535 * 85.06539 * 7 5 4 37 37 H 1.08998 * 110.49144 * 156.61946 * 8 7 5 38 38 H 1.08996 * 110.48977 * 279.13044 * 8 7 5 39 39 H 1.09005 * 110.03686 * 217.10346 * 9 8 7 40 40 H 1.09007 * 110.03436 * 95.67738 * 9 8 7 41 41 H 1.00901 * 111.00013 * 36.11452 * 12 10 9 42 42 H 1.09002 * 110.03123 * 23.14079 * 15 13 12 43 43 H 1.08997 * 110.03684 * 261.70393 * 15 13 12 44 44 H 1.09001 * 110.03328 * 240.71486 * 16 15 13 45 45 H 1.08994 * 110.07099 * 119.30735 * 16 15 13 46 46 H 0.96995 * 120.00207 * 179.97438 * 22 21 19 47 47 H 1.09006 * 110.75769 * 156.25769 * 27 17 16 48 48 H 1.08997 * 110.75812 * 279.62568 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4602 -0.0006 5 6 3.8253 2.9384 -0.0012 6 1 3.3224 3.4687 0.8076 7 6 3.4902 3.5884 -1.3665 8 6 4.4550 4.7991 -1.4147 9 6 5.7558 4.2720 -0.7746 10 6 5.3555 3.0889 0.1242 11 1 5.8493 2.1780 -0.2145 12 7 5.7209 3.3702 1.5189 13 6 7.0990 2.9449 1.7981 14 1 7.3326 2.0300 1.2535 15 6 8.0949 4.0632 1.4274 16 6 9.2016 4.0382 2.4962 17 6 8.8400 2.9052 3.4787 18 1 9.3568 1.9848 3.2066 19 6 9.1822 3.3028 4.8915 20 1 8.4037 3.3704 5.6370 21 6 10.4882 3.5859 5.2307 22 7 11.4361 3.5035 4.3229 23 14 10.9112 4.0863 6.9800 24 1 9.6750 4.1040 7.8025 25 1 11.8744 3.1126 7.5543 26 1 11.5207 5.4404 6.9740 27 6 7.3085 2.7379 3.3185 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 3.8332 0.9767 -0.8909 34 1 3.8340 0.9765 0.8891 35 1 3.6963 2.8976 -2.1842 36 1 2.4523 3.9203 -1.3920 37 1 4.6335 5.1040 -2.4458 38 1 4.0527 5.6308 -0.8363 39 1 6.2214 5.0549 -0.1759 40 1 6.4440 3.9356 -1.5502 41 1 5.5930 4.3472 1.7361 42 1 7.5907 5.0296 1.4345 43 1 8.5221 3.8716 0.4431 44 1 9.2346 4.9924 3.0220 45 1 10.1662 3.8349 2.0312 46 1 12.3549 3.7031 4.5615 47 1 6.9956 1.7379 3.6192 48 1 6.7751 3.4985 3.8886 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000449447042.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:22 Heat of formation + Delta-G solvation = -81.127763 kcal Electronic energy + Delta-G solvation = -22713.121007 eV Core-core repulsion = 19573.194839 eV Total energy + Delta-G solvation = -3139.926168 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.38309 -37.87906 -36.80645 -33.42890 -31.90160 -31.64763 -29.67653 -27.99655 -27.65737 -25.63907 -24.09845 -23.24620 -22.91789 -20.51084 -20.28434 -19.13429 -18.96532 -16.82155 -16.28956 -16.16206 -15.66008 -15.43832 -14.57401 -14.54716 -14.14304 -14.07000 -13.60148 -13.29606 -12.84160 -12.66667 -12.55778 -12.37642 -12.01283 -11.97698 -11.62320 -11.39021 -11.30545 -11.07609 -10.98413 -10.85046 -10.67373 -10.61730 -10.58685 -10.53553 -10.40620 -10.00771 -9.79075 -9.62145 -9.46747 -9.06014 -8.66813 -8.34252 -7.91550 -5.96512 -3.98670 3.31964 3.40124 3.44534 3.55372 4.38959 4.49028 4.63354 4.67270 4.85425 4.93874 5.01026 5.17253 5.22046 5.34834 5.39141 5.39935 5.42737 5.48966 5.55471 5.61169 5.66963 5.70420 5.71269 5.75308 5.87821 5.89776 5.91462 5.96505 6.03586 6.17443 6.20826 6.31011 6.38287 6.54369 6.72052 6.78804 6.89960 7.08152 7.16015 7.22721 7.40361 7.59752 7.77343 7.78339 7.96549 8.08114 8.52797 9.04962 9.65247 11.13130 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.022900 B = 0.003302 C = 0.002994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1222.429656 B = 8477.724497 C = 9351.335281 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.057 3.943 3 O -0.389 6.389 4 C 0.074 3.926 5 C -0.078 4.078 6 H 0.089 0.911 7 C -0.115 4.115 8 C -0.124 4.124 9 C -0.153 4.153 10 C 0.091 3.909 11 H 0.076 0.924 12 N -0.677 5.677 13 C 0.081 3.919 14 H 0.070 0.930 15 C -0.151 4.151 16 C -0.093 4.093 17 C 0.046 3.954 18 H 0.026 0.974 19 C -0.509 4.509 20 H 0.056 0.944 21 C 0.060 3.940 22 N -0.891 5.891 23 Si 0.887 3.113 24 H -0.273 1.273 25 H -0.285 1.285 26 H -0.285 1.285 27 C -0.100 4.100 28 H 0.068 0.932 29 H 0.062 0.938 30 H 0.060 0.940 31 H 0.044 0.956 32 H 0.047 0.953 33 H 0.043 0.957 34 H 0.055 0.945 35 H 0.063 0.937 36 H 0.067 0.933 37 H 0.061 0.939 38 H 0.064 0.936 39 H 0.069 0.931 40 H 0.062 0.938 41 H 0.341 0.659 42 H 0.047 0.953 43 H 0.042 0.958 44 H 0.049 0.951 45 H 0.052 0.948 46 H 0.258 0.742 47 H 0.046 0.954 48 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.803 -2.633 -12.817 21.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.020 4.020 3 O -0.309 6.309 4 C -0.002 4.002 5 C -0.097 4.097 6 H 0.108 0.892 7 C -0.153 4.153 8 C -0.161 4.161 9 C -0.192 4.192 10 C -0.020 4.020 11 H 0.094 0.906 12 N -0.306 5.306 13 C -0.028 4.028 14 H 0.088 0.912 15 C -0.190 4.190 16 C -0.131 4.131 17 C 0.028 3.972 18 H 0.044 0.956 19 C -0.548 4.548 20 H 0.074 0.926 21 C -0.141 4.141 22 N -0.530 5.530 23 Si 0.716 3.284 24 H -0.198 1.198 25 H -0.211 1.211 26 H -0.212 1.212 27 C -0.138 4.138 28 H 0.087 0.913 29 H 0.082 0.918 30 H 0.080 0.920 31 H 0.062 0.938 32 H 0.066 0.934 33 H 0.061 0.939 34 H 0.073 0.927 35 H 0.081 0.919 36 H 0.086 0.914 37 H 0.079 0.921 38 H 0.083 0.917 39 H 0.088 0.912 40 H 0.081 0.919 41 H 0.160 0.840 42 H 0.065 0.935 43 H 0.061 0.939 44 H 0.068 0.932 45 H 0.071 0.929 46 H 0.067 0.933 47 H 0.065 0.935 48 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -17.011 -3.039 -12.579 21.374 hybrid contribution 1.211 0.779 0.386 1.490 sum -15.800 -2.261 -12.193 20.086 Atomic orbital electron populations 1.21732 0.93995 1.02014 1.03018 1.22414 0.95377 0.84264 0.99945 1.87865 1.21649 1.25927 1.95427 1.22521 0.80596 0.97073 1.00037 1.21958 0.95427 0.94119 0.98182 0.89237 1.22504 0.99218 0.96859 0.96706 1.22324 0.95558 0.97926 1.00323 1.22961 0.97635 0.98708 0.99893 1.22166 0.93976 0.97495 0.88321 0.90591 1.60715 1.24956 1.25208 1.19726 1.22607 0.84938 0.96712 0.98535 0.91220 1.22988 0.99050 0.97555 0.99405 1.22002 0.95436 1.00814 0.94890 1.19452 0.88989 0.94283 0.94517 0.95602 1.21220 0.92882 1.45658 0.95021 0.92614 1.24988 0.96605 0.95621 0.96887 1.69987 1.00515 1.49492 1.33024 0.86609 0.78384 0.78089 0.85356 1.19774 1.21135 1.21177 1.22527 0.99388 0.99781 0.92099 0.91330 0.91844 0.92041 0.93764 0.93432 0.93911 0.92666 0.91855 0.91390 0.92071 0.91713 0.91191 0.91878 0.84015 0.93452 0.93893 0.93196 0.92923 0.93269 0.93476 0.92319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.17 10.28 37.15 0.38 -0.79 16 2 C 0.06 0.54 6.66 37.15 0.25 0.79 16 3 O -0.39 -4.70 10.26 -35.23 -0.36 -5.06 16 4 C 0.07 0.86 5.21 37.15 0.19 1.05 16 5 C -0.08 -0.91 2.83 -88.96 -0.25 -1.16 16 6 H 0.09 1.16 8.05 -51.93 -0.42 0.74 16 7 C -0.12 -1.18 6.25 -24.74 -0.15 -1.33 16 8 C -0.12 -1.24 6.83 -25.08 -0.17 -1.41 16 9 C -0.15 -1.76 5.95 -25.61 -0.15 -1.91 16 10 C 0.09 1.14 2.80 -66.59 -0.19 0.96 16 11 H 0.08 0.99 7.17 -51.93 -0.37 0.61 16 12 N -0.68 -10.00 6.09 -96.85 -0.59 -10.59 16 13 C 0.08 1.42 3.15 -66.06 -0.21 1.21 16 14 H 0.07 1.22 7.51 -51.93 -0.39 0.83 16 15 C -0.15 -2.76 5.41 -25.61 -0.14 -2.90 16 16 C -0.09 -2.16 5.39 -25.61 -0.14 -2.30 16 17 C 0.05 1.15 2.80 -90.11 -0.25 0.90 16 18 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 19 C -0.51 -14.09 8.40 -34.44 -0.29 -14.38 16 20 H 0.06 1.53 7.77 -52.49 -0.41 1.13 16 21 C 0.06 1.68 5.32 -17.82 -0.09 1.59 16 22 N -0.89 -25.84 12.34 55.43 0.68 -25.16 16 23 Si 0.89 21.50 29.54 -169.99 -5.02 16.48 16 24 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 25 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 26 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 27 C -0.10 -2.07 5.97 -24.75 -0.15 -2.22 16 28 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.04 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.04 0.45 8.02 -51.93 -0.42 0.04 16 34 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.06 0.63 7.96 -51.93 -0.41 0.21 16 36 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.07 0.87 6.14 -51.93 -0.32 0.55 16 40 H 0.06 0.72 8.14 -51.92 -0.42 0.29 16 41 H 0.34 4.96 7.57 -39.29 -0.30 4.66 16 42 H 0.05 0.81 6.76 -51.93 -0.35 0.46 16 43 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 44 H 0.05 1.25 7.83 -51.93 -0.41 0.84 16 45 H 0.05 1.32 7.93 -51.93 -0.41 0.90 16 46 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 47 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 48 H 0.06 1.25 8.05 -51.93 -0.42 0.83 16 LS Contribution 367.75 15.07 5.54 5.54 Total: -1.00 -28.38 367.75 -10.36 -38.75 By element: Atomic # 1 Polarization: 11.20 SS G_CDS: -9.25 Total: 1.94 kcal Atomic # 6 Polarization: -20.54 SS G_CDS: -1.36 Total: -21.90 kcal Atomic # 7 Polarization: -35.85 SS G_CDS: 0.09 Total: -35.75 kcal Atomic # 8 Polarization: -4.70 SS G_CDS: -0.36 Total: -5.06 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -28.38 -10.36 -38.75 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000449447042.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.382 kcal (2) G-P(sol) polarization free energy of solvation -28.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.746 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds