Wall clock time and date at job start Tue Mar 31 2020 05:17:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08992 * 110.05677 * 2 1 4 4 C 1.54266 * 110.02913 * 238.57761 * 2 1 3 5 5 C 1.54885 * 104.19867 * 264.32812 * 4 2 1 6 6 C 1.54888 * 102.74617 * 322.06008 * 5 4 2 7 7 C 1.53875 * 110.02951 * 121.41445 * 2 1 3 8 8 C 1.52999 * 110.03459 * 238.61557 * 7 2 1 9 9 C 1.50707 * 110.03636 * 0.02562 * 7 2 1 10 10 O 1.21281 * 119.99870 * 112.19396 * 9 7 2 11 11 N 1.34773 * 119.99760 * 292.20133 * 9 7 2 12 12 C 1.46493 * 120.00039 * 174.74441 * 11 9 7 13 13 C 1.53003 * 109.47413 * 180.27059 * 12 11 9 14 14 C 1.53005 * 109.47025 * 300.00362 * 13 12 11 15 15 C 1.53000 * 109.47051 * 59.99562 * 13 12 11 16 16 C 1.52994 * 109.47394 * 180.02562 * 13 12 11 17 17 C 1.50702 * 109.47191 * 180.02562 * 16 13 12 18 18 H 1.08002 * 120.00158 * 359.97438 * 17 16 13 19 19 C 1.37881 * 119.99828 * 179.97438 * 17 16 13 20 20 N 1.31508 * 120.00351 * 0.02562 * 19 17 16 21 21 Si 1.86804 * 119.99549 * 179.97438 * 19 17 16 22 22 H 1.48504 * 109.47090 * 60.00394 * 21 19 17 23 23 H 1.48502 * 109.46860 * 179.97438 * 21 19 17 24 24 H 1.48495 * 109.47276 * 299.99972 * 21 19 17 25 25 H 1.09000 * 109.47009 * 305.11182 * 1 2 3 26 26 H 1.09003 * 109.47412 * 65.10855 * 1 2 3 27 27 H 1.09004 * 109.47329 * 185.11242 * 1 2 3 28 28 H 1.09005 * 110.48554 * 23.01113 * 4 2 1 29 29 H 1.09002 * 110.48288 * 145.51546 * 4 2 1 30 30 H 1.08994 * 110.75963 * 80.37675 * 5 4 2 31 31 H 1.08999 * 110.75507 * 203.56645 * 5 4 2 32 32 H 1.09002 * 110.48638 * 279.26234 * 6 5 4 33 33 H 1.09002 * 110.48527 * 156.62480 * 6 5 4 34 34 H 1.08998 * 109.47136 * 180.69617 * 8 7 2 35 35 H 1.09001 * 109.46997 * 300.69756 * 8 7 2 36 36 H 1.09001 * 109.46686 * 60.68858 * 8 7 2 37 37 H 0.97004 * 119.99531 * 355.01219 * 11 9 7 38 38 H 1.08998 * 109.47189 * 300.27360 * 12 11 9 39 39 H 1.09004 * 109.47358 * 60.27527 * 12 11 9 40 40 H 1.09001 * 109.47339 * 59.99467 * 14 13 12 41 41 H 1.09001 * 109.46895 * 180.02562 * 14 13 12 42 42 H 1.09005 * 109.46475 * 299.99820 * 14 13 12 43 43 H 1.09007 * 109.46732 * 60.00261 * 15 13 12 44 44 H 1.08993 * 109.47127 * 180.02562 * 15 13 12 45 45 H 1.09001 * 109.47268 * 300.00505 * 15 13 12 46 46 H 1.09007 * 109.46978 * 300.00100 * 16 13 12 47 47 H 1.08997 * 109.47072 * 59.99844 * 16 13 12 48 48 H 0.96995 * 120.00558 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9038 1.0238 0.0000 4 6 2.0584 -0.7556 -1.2368 5 6 2.3279 -2.1903 -0.7190 6 6 2.8873 -1.9407 0.7036 7 6 2.0570 -0.7535 1.2338 8 6 2.9399 0.1707 2.0748 9 6 0.9037 -1.2597 2.0613 10 8 0.6954 -2.4514 2.1464 11 7 0.1037 -0.3879 2.7066 12 6 -1.0838 -0.8704 3.4159 13 6 -1.8146 0.3141 4.0515 14 6 -0.8819 1.0186 5.0388 15 6 -2.2378 1.2980 2.9590 16 6 -3.0545 -0.1899 4.7929 17 6 -3.7746 0.9769 5.4184 18 1 -3.3865 1.9777 5.2994 19 6 -4.9289 0.7666 6.1425 20 7 -5.4013 -0.4521 6.2878 21 14 -5.8211 2.2129 6.9184 22 1 -6.2318 3.1678 5.8579 23 1 -7.0253 1.7239 7.6368 24 1 -4.9159 2.8965 7.8767 25 1 -0.3633 0.5911 0.8407 26 1 -0.3634 0.4325 -0.9322 27 1 -0.3634 -1.0236 0.0916 28 1 1.3060 -0.7697 -2.0255 29 1 2.9798 -0.2988 -1.5980 30 1 1.4030 -2.7652 -0.6751 31 1 3.0650 -2.6943 -1.3440 32 1 3.9439 -1.6767 0.6572 33 1 2.7400 -2.8197 1.3310 34 1 3.3179 -0.3755 2.9390 35 1 3.7774 0.5211 1.4716 36 1 2.3532 1.0249 2.4128 37 1 0.3121 0.5594 2.6981 38 1 -1.7483 -1.3723 2.7126 39 1 -0.7824 -1.5713 4.1944 40 1 0.0017 1.3775 4.5110 41 1 -1.4027 1.8621 5.4919 42 1 -0.5804 0.3175 5.8172 43 1 -2.9023 0.7961 2.2556 44 1 -2.7580 2.1420 3.4118 45 1 -1.3542 1.6570 2.4312 46 1 -3.7191 -0.6920 4.0898 47 1 -2.7526 -0.8906 5.5712 48 1 -6.2131 -0.6001 6.7976 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000452105584.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:25 Heat of formation + Delta-G solvation = -74.822143 kcal Electronic energy + Delta-G solvation = -23794.219271 eV Core-core repulsion = 20654.566535 eV Total energy + Delta-G solvation = -3139.652736 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.79415 -37.91424 -36.71843 -33.76180 -32.26073 -31.59068 -30.86871 -27.13541 -26.64417 -26.45495 -26.02603 -24.27293 -23.10758 -21.52605 -20.44167 -19.24650 -17.92988 -16.53991 -16.35380 -15.86460 -15.33440 -15.28310 -14.51030 -14.43922 -13.76619 -13.51783 -13.37489 -13.15086 -13.06140 -12.78733 -12.62401 -12.49543 -12.28835 -12.07986 -12.04541 -11.45366 -11.15804 -11.03759 -11.00469 -10.88450 -10.85083 -10.72841 -10.64041 -10.63738 -10.58427 -10.39030 -10.25633 -9.85838 -9.55531 -9.11764 -8.92513 -8.58811 -8.35831 -5.99894 -4.01363 2.90118 3.31666 3.37204 3.38006 3.50200 4.31808 4.40537 4.44915 4.57173 5.02523 5.06530 5.13450 5.23097 5.29807 5.35463 5.39083 5.45883 5.52743 5.59990 5.63399 5.65470 5.73081 5.80200 5.83516 5.86828 5.94844 5.98983 6.07459 6.11816 6.19763 6.23831 6.26600 6.31429 6.35917 6.40189 6.60100 6.62648 6.80563 7.06495 7.07246 7.13449 7.63865 7.76527 7.82589 7.98716 8.40232 8.51955 9.03262 9.61725 11.11533 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.034533 B = 0.003701 C = 0.003670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 810.633648 B = 7562.962964 C = 7627.714528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.082 4.082 3 H 0.078 0.922 4 C -0.119 4.119 5 C -0.123 4.123 6 C -0.106 4.106 7 C -0.085 4.085 8 C -0.139 4.139 9 C 0.526 3.474 10 O -0.546 6.546 11 N -0.721 5.721 12 C 0.128 3.872 13 C -0.072 4.072 14 C -0.127 4.127 15 C -0.127 4.127 16 C 0.037 3.963 17 C -0.512 4.512 18 H 0.059 0.941 19 C 0.057 3.943 20 N -0.895 5.895 21 Si 0.889 3.111 22 H -0.278 1.278 23 H -0.288 1.288 24 H -0.278 1.278 25 H 0.070 0.930 26 H 0.055 0.945 27 H 0.059 0.941 28 H 0.066 0.934 29 H 0.065 0.935 30 H 0.070 0.930 31 H 0.064 0.936 32 H 0.068 0.932 33 H 0.082 0.918 34 H 0.061 0.939 35 H 0.066 0.934 36 H 0.059 0.941 37 H 0.397 0.603 38 H 0.061 0.939 39 H 0.062 0.938 40 H 0.028 0.972 41 H 0.066 0.934 42 H 0.047 0.953 43 H 0.047 0.953 44 H 0.066 0.934 45 H 0.028 0.972 46 H 0.018 0.982 47 H 0.018 0.982 48 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.686 2.490 -12.833 21.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.101 4.101 3 H 0.096 0.904 4 C -0.157 4.157 5 C -0.160 4.160 6 C -0.144 4.144 7 C -0.088 4.088 8 C -0.196 4.196 9 C 0.312 3.688 10 O -0.423 6.423 11 N -0.373 5.373 12 C 0.005 3.995 13 C -0.072 4.072 14 C -0.184 4.184 15 C -0.184 4.184 16 C -0.001 4.001 17 C -0.550 4.550 18 H 0.077 0.923 19 C -0.144 4.144 20 N -0.534 5.534 21 Si 0.717 3.283 22 H -0.203 1.203 23 H -0.214 1.214 24 H -0.203 1.203 25 H 0.088 0.912 26 H 0.074 0.926 27 H 0.078 0.922 28 H 0.085 0.915 29 H 0.084 0.916 30 H 0.088 0.912 31 H 0.083 0.917 32 H 0.087 0.913 33 H 0.101 0.899 34 H 0.080 0.920 35 H 0.085 0.915 36 H 0.078 0.922 37 H 0.233 0.767 38 H 0.080 0.920 39 H 0.081 0.919 40 H 0.047 0.953 41 H 0.085 0.915 42 H 0.066 0.934 43 H 0.066 0.934 44 H 0.085 0.915 45 H 0.047 0.953 46 H 0.036 0.964 47 H 0.036 0.964 48 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 16.354 1.535 -12.677 20.749 hybrid contribution -0.590 1.209 0.541 1.450 sum 15.764 2.744 -12.136 20.083 Atomic orbital electron populations 1.22246 0.94340 1.02713 1.02488 1.21775 0.96318 0.98955 0.93025 0.90352 1.22444 1.00661 0.95710 0.96882 1.22460 1.01205 0.96573 0.95795 1.22340 0.97851 0.97488 0.96722 1.21547 0.94575 0.97222 0.95436 1.21903 0.99335 0.98654 0.99756 1.20239 0.83139 0.86402 0.79009 1.90663 1.72510 1.16057 1.63099 1.46335 1.27035 1.10562 1.53411 1.21597 0.85136 0.97318 0.95466 1.20891 0.97436 0.93531 0.95369 1.21759 0.97033 1.01124 0.98475 1.21781 0.99051 0.99976 0.97601 1.19077 0.89863 0.96454 0.94679 1.21149 1.08333 0.93475 1.32072 0.92333 1.25008 0.97446 0.95411 0.96568 1.69949 1.22344 1.19920 1.41179 0.86718 0.79231 0.82887 0.79498 1.20333 1.21396 1.20330 0.91164 0.92554 0.92242 0.91502 0.91647 0.91167 0.91701 0.91316 0.89901 0.92014 0.91527 0.92192 0.76651 0.92025 0.91944 0.95326 0.91469 0.93384 0.93352 0.91467 0.95264 0.96397 0.96389 0.92978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.82 7.80 37.16 0.29 -1.53 16 2 C -0.08 -0.80 3.16 -89.50 -0.28 -1.09 16 3 H 0.08 0.66 7.67 -51.93 -0.40 0.26 16 4 C -0.12 -1.07 6.37 -25.07 -0.16 -1.23 16 5 C -0.12 -1.24 6.91 -24.74 -0.17 -1.41 16 6 C -0.11 -1.15 5.67 -25.07 -0.14 -1.29 16 7 C -0.08 -0.94 0.81 -154.54 -0.13 -1.06 16 8 C -0.14 -1.26 7.99 37.16 0.30 -0.97 16 9 C 0.53 7.80 4.61 -10.98 -0.05 7.75 16 10 O -0.55 -10.23 15.44 5.56 0.09 -10.15 16 11 N -0.72 -10.38 3.16 -60.29 -0.19 -10.57 16 12 C 0.13 2.26 4.57 -4.04 -0.02 2.24 16 13 C -0.07 -1.35 0.54 -154.51 -0.08 -1.43 16 14 C -0.13 -2.21 8.05 37.16 0.30 -1.91 16 15 C -0.13 -2.19 8.05 37.16 0.30 -1.89 16 16 C 0.04 0.90 4.04 -27.89 -0.11 0.79 16 17 C -0.51 -13.54 7.65 -34.44 -0.26 -13.81 16 18 H 0.06 1.48 5.68 -52.49 -0.30 1.19 16 19 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 20 N -0.89 -26.42 13.29 55.43 0.74 -25.68 16 21 Si 0.89 21.15 29.54 -169.99 -5.02 16.12 16 22 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 23 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 24 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 25 H 0.07 0.83 5.04 -51.93 -0.26 0.56 16 26 H 0.06 0.57 8.10 -51.93 -0.42 0.15 16 27 H 0.06 0.81 7.14 -51.93 -0.37 0.44 16 28 H 0.07 0.58 7.81 -51.93 -0.41 0.18 16 29 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.07 0.61 7.85 -51.93 -0.41 0.20 16 33 H 0.08 1.08 6.91 -51.93 -0.36 0.72 16 34 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.07 0.49 8.13 -51.93 -0.42 0.07 16 36 H 0.06 0.51 7.22 -51.93 -0.37 0.13 16 37 H 0.40 4.96 4.46 -40.82 -0.18 4.78 16 38 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 39 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 40 H 0.03 0.40 6.86 -51.93 -0.36 0.05 16 41 H 0.07 1.26 6.62 -51.93 -0.34 0.92 16 42 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 43 H 0.05 0.85 8.14 -51.92 -0.42 0.43 16 44 H 0.07 1.25 6.62 -51.93 -0.34 0.91 16 45 H 0.03 0.41 5.95 -51.93 -0.31 0.10 16 46 H 0.02 0.47 8.14 -51.92 -0.42 0.05 16 47 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 48 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 LS Contribution 356.21 15.07 5.37 5.37 Total: -1.00 -30.04 356.21 -7.96 -38.00 By element: Atomic # 1 Polarization: 10.88 SS G_CDS: -8.62 Total: 2.27 kcal Atomic # 6 Polarization: -15.04 SS G_CDS: -0.32 Total: -15.36 kcal Atomic # 7 Polarization: -36.80 SS G_CDS: 0.55 Total: -36.25 kcal Atomic # 8 Polarization: -10.23 SS G_CDS: 0.09 Total: -10.15 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -30.04 -7.96 -38.00 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000452105584.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.820 kcal (2) G-P(sol) polarization free energy of solvation -30.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.002 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds