Wall clock time and date at job start Tue Mar 31 2020 05:17:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08994 * 110.53946 * 2 1 4 4 C 1.54892 * 110.48492 * 237.38863 * 2 1 3 5 5 C 1.54890 * 102.74394 * 203.37957 * 4 2 1 6 6 C 1.54376 * 104.20066 * 37.97062 * 5 4 2 7 7 C 1.53875 * 106.54310 * 336.34879 * 6 5 4 8 8 C 1.53002 * 110.03210 * 119.34597 * 7 6 5 9 9 C 1.50701 * 110.03342 * 240.73002 * 7 6 5 10 10 O 1.21280 * 119.99781 * 117.90558 * 9 7 6 11 11 N 1.34771 * 119.99622 * 297.91234 * 9 7 6 12 12 C 1.46505 * 119.99622 * 179.97438 * 11 9 7 13 13 C 1.52997 * 109.47212 * 179.97438 * 12 11 9 14 14 C 1.53006 * 109.47127 * 300.00138 * 13 12 11 15 15 C 1.52999 * 109.47317 * 59.99649 * 13 12 11 16 16 C 1.52992 * 109.47482 * 179.97438 * 13 12 11 17 17 C 1.50698 * 109.47592 * 179.97438 * 16 13 12 18 18 H 1.08003 * 120.00057 * 0.02562 * 17 16 13 19 19 C 1.37876 * 120.00356 * 179.97438 * 17 16 13 20 20 N 1.31519 * 119.99989 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 120.00117 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.47306 * 0.02562 * 21 19 17 23 23 H 1.48507 * 109.47019 * 120.00329 * 21 19 17 24 24 H 1.48498 * 109.47326 * 240.00104 * 21 19 17 25 25 H 1.08999 * 109.47351 * 297.38732 * 1 2 3 26 26 H 1.09003 * 109.47149 * 57.38619 * 1 2 3 27 27 H 1.09000 * 109.47185 * 177.38636 * 1 2 3 28 28 H 1.09000 * 110.75141 * 321.69307 * 4 2 1 29 29 H 1.08993 * 110.75843 * 85.06300 * 4 2 1 30 30 H 1.09002 * 110.48378 * 156.61997 * 5 4 2 31 31 H 1.08996 * 110.48705 * 279.12537 * 5 4 2 32 32 H 1.08997 * 110.04549 * 217.09139 * 6 5 4 33 33 H 1.08998 * 110.07062 * 95.62585 * 6 5 4 34 34 H 1.08998 * 109.47043 * 182.08817 * 8 7 6 35 35 H 1.08998 * 109.47099 * 302.09415 * 8 7 6 36 36 H 1.09004 * 109.46895 * 62.09243 * 8 7 6 37 37 H 0.96996 * 120.00772 * 359.97438 * 11 9 7 38 38 H 1.09002 * 109.47068 * 299.99729 * 12 11 9 39 39 H 1.09001 * 109.47372 * 59.99816 * 12 11 9 40 40 H 1.08993 * 109.46955 * 60.00011 * 14 13 12 41 41 H 1.09000 * 109.47050 * 179.97438 * 14 13 12 42 42 H 1.09001 * 109.47002 * 299.99574 * 14 13 12 43 43 H 1.09002 * 109.46716 * 60.00091 * 15 13 12 44 44 H 1.09000 * 109.47486 * 180.02562 * 15 13 12 45 45 H 1.09001 * 109.47362 * 300.00732 * 15 13 12 46 46 H 1.09002 * 109.47103 * 300.00247 * 16 13 12 47 47 H 1.09001 * 109.47066 * 60.00169 * 16 13 12 48 48 H 0.96996 * 119.99885 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9124 1.0207 0.0000 4 6 2.0721 -0.7820 -1.2222 5 6 3.4907 -1.1979 -0.7600 6 6 3.3163 -1.5415 0.7350 7 6 2.0699 -0.7788 1.2173 8 6 1.0134 -1.7653 1.7188 9 6 2.4449 0.1794 2.3183 10 8 2.2882 1.3721 2.1636 11 7 2.9546 -0.2890 3.4746 12 6 3.3197 0.6426 4.5448 13 6 3.8685 -0.1416 5.7384 14 6 2.7988 -1.1098 6.2479 15 6 5.1056 -0.9306 5.3050 16 6 4.2504 0.8313 6.8557 17 6 4.7904 0.0589 8.0316 18 1 4.8551 -1.0183 7.9865 19 6 5.2027 0.7273 9.1649 20 7 5.1244 2.0390 9.2198 21 14 5.8714 -0.2303 10.6228 22 1 5.8550 -1.6821 10.3110 23 1 7.2653 0.2003 10.9004 24 1 5.0261 0.0299 11.8156 25 1 -0.3634 0.4727 0.9125 26 1 -0.3633 0.5539 -0.8656 27 1 -0.3633 -1.0266 -0.0469 28 1 1.4580 -1.6600 -1.4222 29 1 2.1251 -0.1382 -2.1001 30 1 3.8315 -2.0722 -1.3146 31 1 4.1902 -0.3715 -0.8849 32 1 4.1924 -1.2184 1.2972 33 1 3.1682 -2.6144 0.8574 34 1 0.1211 -1.2183 2.0234 35 1 0.7579 -2.4614 0.9200 36 1 1.4085 -2.3189 2.5706 37 1 3.0797 -1.2429 3.5985 38 1 4.0814 1.3325 4.1817 39 1 2.4382 1.2044 4.8539 40 1 2.5273 -1.8028 5.4518 41 1 3.1900 -1.6687 7.0980 42 1 1.9175 -0.5477 6.5568 43 1 5.8676 -0.2409 4.9420 44 1 5.4963 -1.4897 6.1552 45 1 4.8340 -1.6237 4.5087 46 1 5.0125 1.5207 6.4924 47 1 3.3693 1.3937 7.1647 48 1 5.4141 2.5092 10.0171 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000452105586.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:27 Heat of formation + Delta-G solvation = -97.722704 kcal Electronic energy + Delta-G solvation = -23400.124063 eV Core-core repulsion = 20259.478285 eV Total energy + Delta-G solvation = -3140.645779 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.67396 -39.35095 -38.15247 -35.30151 -34.03178 -32.55349 -31.78514 -29.09356 -27.97804 -27.69784 -26.61949 -25.98157 -24.83248 -22.50776 -21.34570 -20.28994 -19.18830 -18.39339 -17.94592 -17.10627 -16.51015 -16.44014 -15.86186 -15.58453 -15.13348 -14.97661 -14.81191 -14.52185 -14.47141 -14.09005 -13.95620 -13.80257 -13.39097 -13.06553 -12.89637 -12.70513 -12.62537 -12.60590 -12.36152 -12.31445 -12.24148 -11.96664 -11.92455 -11.70998 -11.55553 -11.48763 -11.38314 -11.33845 -11.09992 -10.88728 -10.55195 -10.53203 -10.05315 -8.14812 -6.22923 1.41553 1.42463 1.54395 1.68026 2.24109 2.44744 3.19760 3.44613 3.62136 3.77667 3.95165 4.06180 4.15806 4.21106 4.29598 4.39854 4.43596 4.57213 4.63906 4.66067 4.68327 4.70464 4.76330 4.86673 4.94462 4.94693 5.00212 5.03931 5.09181 5.11006 5.11987 5.19888 5.25241 5.32508 5.39010 5.39939 5.46545 5.47000 5.48470 5.52089 5.56000 5.60755 5.78666 5.88924 6.29194 6.61706 6.92589 7.29649 7.45125 8.98071 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.035977 B = 0.003430 C = 0.003372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 778.089260 B = 8161.426318 C = 8301.275675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.085 4.085 3 H 0.055 0.945 4 C -0.111 4.111 5 C -0.124 4.124 6 C -0.114 4.114 7 C -0.076 4.076 8 C -0.137 4.137 9 C 0.513 3.487 10 O -0.592 6.592 11 N -0.707 5.707 12 C 0.141 3.859 13 C -0.064 4.064 14 C -0.121 4.121 15 C -0.121 4.121 16 C 0.040 3.960 17 C -0.512 4.512 18 H 0.074 0.926 19 C -0.006 4.006 20 N -0.940 5.940 21 Si 0.960 3.040 22 H -0.255 1.255 23 H -0.285 1.285 24 H -0.285 1.285 25 H 0.034 0.966 26 H 0.059 0.941 27 H 0.080 0.920 28 H 0.090 0.910 29 H 0.069 0.931 30 H 0.089 0.911 31 H 0.050 0.950 32 H 0.055 0.945 33 H 0.102 0.898 34 H 0.055 0.945 35 H 0.095 0.905 36 H 0.068 0.932 37 H 0.412 0.588 38 H 0.041 0.959 39 H 0.042 0.958 40 H 0.070 0.930 41 H 0.057 0.943 42 H 0.036 0.964 43 H 0.035 0.965 44 H 0.057 0.943 45 H 0.069 0.931 46 H -0.016 1.016 47 H -0.016 1.016 48 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.972 -13.704 -20.234 25.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.104 4.104 3 H 0.074 0.926 4 C -0.148 4.148 5 C -0.161 4.161 6 C -0.152 4.152 7 C -0.079 4.079 8 C -0.194 4.194 9 C 0.300 3.700 10 O -0.472 6.472 11 N -0.359 5.359 12 C 0.017 3.983 13 C -0.065 4.065 14 C -0.178 4.178 15 C -0.178 4.178 16 C 0.002 3.998 17 C -0.550 4.550 18 H 0.092 0.908 19 C -0.203 4.203 20 N -0.581 5.581 21 Si 0.785 3.215 22 H -0.179 1.179 23 H -0.211 1.211 24 H -0.211 1.211 25 H 0.053 0.947 26 H 0.078 0.922 27 H 0.099 0.901 28 H 0.108 0.892 29 H 0.088 0.912 30 H 0.108 0.892 31 H 0.069 0.931 32 H 0.074 0.926 33 H 0.121 0.879 34 H 0.074 0.926 35 H 0.113 0.887 36 H 0.087 0.913 37 H 0.250 0.750 38 H 0.059 0.941 39 H 0.060 0.940 40 H 0.089 0.911 41 H 0.076 0.924 42 H 0.055 0.945 43 H 0.054 0.946 44 H 0.076 0.924 45 H 0.088 0.912 46 H 0.002 0.998 47 H 0.002 0.998 48 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -7.043 -12.741 -20.211 24.909 hybrid contribution 0.608 0.549 1.478 1.690 sum -6.435 -12.192 -18.734 23.259 Atomic orbital electron populations 1.21841 0.94088 1.02802 1.00925 1.21927 0.96453 0.98666 0.93394 0.92644 1.22553 0.95960 1.00086 0.96214 1.22366 0.97228 1.01589 0.94954 1.22338 0.94814 1.01226 0.96808 1.21527 0.98500 0.95047 0.92835 1.22009 0.97084 0.97869 1.02455 1.21361 0.75612 0.89356 0.83621 1.90647 1.55953 1.19124 1.81520 1.45988 1.64079 1.11170 1.14701 1.21187 0.98105 0.91888 0.87149 1.20702 0.96397 0.96261 0.93093 1.21686 0.96911 0.98194 1.00996 1.21688 0.96147 0.99164 1.00804 1.18972 0.94155 0.93709 0.92943 1.21624 1.40157 0.94011 0.99232 0.90764 1.25974 0.96686 0.95658 1.01990 1.70137 1.49634 1.08749 1.29584 0.85471 0.77584 0.79511 0.78926 1.17867 1.21084 1.21067 0.94682 0.92235 0.90089 0.89191 0.91183 0.89215 0.93068 0.92609 0.87906 0.92643 0.88665 0.91319 0.75011 0.94072 0.94000 0.91143 0.92399 0.94524 0.94574 0.92386 0.91171 0.99782 0.99756 0.93186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.49 7.97 71.98 0.57 -1.92 16 2 C -0.09 -1.75 2.70 -9.72 -0.03 -1.78 16 3 H 0.06 1.56 6.88 -2.39 -0.02 1.54 16 4 C -0.11 -1.56 6.33 31.89 0.20 -1.36 16 5 C -0.12 -1.79 6.83 31.71 0.22 -1.58 16 6 C -0.11 -1.81 6.05 31.36 0.19 -1.62 16 7 C -0.08 -1.53 0.70 -52.20 -0.04 -1.57 16 8 C -0.14 -2.03 6.89 71.98 0.50 -1.54 16 9 C 0.51 15.40 6.28 87.66 0.55 15.95 16 10 O -0.59 -23.62 15.41 -3.03 -0.05 -23.67 16 11 N -0.71 -20.14 4.72 -463.06 -2.19 -22.33 16 12 C 0.14 5.23 4.56 86.38 0.39 5.62 16 13 C -0.06 -2.45 0.54 -52.18 -0.03 -2.48 16 14 C -0.12 -4.05 8.05 71.98 0.58 -3.47 16 15 C -0.12 -4.06 8.05 71.98 0.58 -3.48 16 16 C 0.04 2.05 4.04 29.84 0.12 2.17 16 17 C -0.51 -27.53 7.65 25.60 0.20 -27.33 16 18 H 0.07 3.72 5.68 -2.91 -0.02 3.70 16 19 C -0.01 -0.36 5.46 84.65 0.46 0.10 16 20 N -0.94 -57.59 13.29 21.45 0.28 -57.31 16 21 Si 0.96 43.62 29.54 68.60 2.03 45.64 16 22 H -0.26 -10.75 7.11 99.48 0.71 -10.04 16 23 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 24 H -0.28 -12.83 7.11 99.48 0.71 -12.13 16 25 H 0.03 0.77 7.67 -2.39 -0.02 0.75 16 26 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 27 H 0.08 1.04 6.61 -2.39 -0.02 1.03 16 28 H 0.09 0.91 8.04 -2.39 -0.02 0.89 16 29 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 30 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 31 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 32 H 0.06 1.05 7.61 -2.39 -0.02 1.04 16 33 H 0.10 1.08 7.67 -2.39 -0.02 1.06 16 34 H 0.05 0.95 6.69 -2.39 -0.02 0.94 16 35 H 0.09 0.92 7.62 -2.39 -0.02 0.91 16 36 H 0.07 0.89 7.55 -2.38 -0.02 0.87 16 37 H 0.41 9.14 5.55 -92.71 -0.51 8.63 16 38 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 39 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 40 H 0.07 1.76 6.86 -2.39 -0.02 1.75 16 41 H 0.06 2.06 6.62 -2.39 -0.02 2.05 16 42 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 43 H 0.04 1.28 8.14 -2.39 -0.02 1.26 16 44 H 0.06 2.07 6.62 -2.39 -0.02 2.06 16 45 H 0.07 1.77 6.86 -2.39 -0.02 1.75 16 46 H -0.02 -0.93 8.14 -2.39 -0.02 -0.95 16 47 H -0.02 -0.92 8.14 -2.39 -0.02 -0.94 16 48 H 0.26 15.04 8.31 -92.71 -0.77 14.27 16 Total: -1.00 -70.31 360.63 4.95 -65.36 By element: Atomic # 1 Polarization: 16.18 SS G_CDS: 0.40 Total: 16.58 kcal Atomic # 6 Polarization: -28.75 SS G_CDS: 4.47 Total: -24.28 kcal Atomic # 7 Polarization: -77.73 SS G_CDS: -1.90 Total: -79.64 kcal Atomic # 8 Polarization: -23.62 SS G_CDS: -0.05 Total: -23.67 kcal Atomic # 14 Polarization: 43.62 SS G_CDS: 2.03 Total: 45.64 kcal Total: -70.31 4.95 -65.36 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000452105586.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.361 kcal (2) G-P(sol) polarization free energy of solvation -70.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.362 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds