Wall clock time and date at job start Tue Mar 31 2020 05:17:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09007 * 110.01930 * 2 1 4 4 C 1.54271 * 110.03234 * 121.44370 * 2 1 3 5 5 C 1.54888 * 104.19346 * 142.89531 * 4 2 1 6 6 C 1.54879 * 102.75007 * 322.05353 * 5 4 2 7 7 C 1.53876 * 110.03382 * 238.60806 * 2 1 3 8 8 C 1.52997 * 110.03310 * 121.38308 * 7 2 1 9 9 C 1.50700 * 110.02911 * 359.97438 * 7 2 1 10 10 O 1.21284 * 119.99948 * 112.47719 * 9 7 2 11 11 N 1.34770 * 120.00062 * 292.47290 * 9 7 2 12 12 C 1.46500 * 119.99990 * 174.98354 * 11 9 7 13 13 C 1.52998 * 109.47442 * 180.02562 * 12 11 9 14 14 C 1.53006 * 109.47218 * 300.00231 * 13 12 11 15 15 C 1.52997 * 109.47106 * 59.99638 * 13 12 11 16 16 C 1.53001 * 109.47664 * 180.02562 * 13 12 11 17 17 C 1.50700 * 109.47410 * 179.97438 * 16 13 12 18 18 H 1.08003 * 119.99622 * 0.02562 * 17 16 13 19 19 C 1.37875 * 119.99994 * 179.97438 * 17 16 13 20 20 N 1.31513 * 120.00028 * 0.02562 * 19 17 16 21 21 Si 1.86798 * 119.99998 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.46933 * 90.00247 * 21 19 17 23 23 H 1.48498 * 109.46953 * 210.00289 * 21 19 17 24 24 H 1.48497 * 109.47197 * 330.00190 * 21 19 17 25 25 H 1.09004 * 109.47339 * 187.92612 * 1 2 3 26 26 H 1.08998 * 109.47276 * 307.92546 * 1 2 3 27 27 H 1.09003 * 109.47282 * 67.92554 * 1 2 3 28 28 H 1.08999 * 110.48344 * 261.57114 * 4 2 1 29 29 H 1.08995 * 110.48714 * 24.07896 * 4 2 1 30 30 H 1.09003 * 110.76099 * 80.37603 * 5 4 2 31 31 H 1.09005 * 110.75158 * 203.55151 * 5 4 2 32 32 H 1.08998 * 110.49112 * 279.26579 * 6 5 4 33 33 H 1.09011 * 110.48489 * 156.62423 * 6 5 4 34 34 H 1.08998 * 109.47077 * 299.31099 * 8 7 2 35 35 H 1.08999 * 109.47304 * 59.30796 * 8 7 2 36 36 H 1.09006 * 109.47374 * 179.31232 * 8 7 2 37 37 H 0.96998 * 120.00185 * 355.25892 * 11 9 7 38 38 H 1.09001 * 109.47145 * 300.00360 * 12 11 9 39 39 H 1.09003 * 109.46947 * 59.99962 * 12 11 9 40 40 H 1.09005 * 109.47201 * 59.99596 * 14 13 12 41 41 H 1.08996 * 109.47260 * 179.97438 * 14 13 12 42 42 H 1.09003 * 109.46923 * 299.99909 * 14 13 12 43 43 H 1.08998 * 109.46965 * 60.00542 * 15 13 12 44 44 H 1.09000 * 109.47238 * 179.97438 * 15 13 12 45 45 H 1.08995 * 109.47620 * 300.00742 * 15 13 12 46 46 H 1.09001 * 109.46849 * 300.00292 * 16 13 12 47 47 H 1.09003 * 109.47020 * 59.99758 * 16 13 12 48 48 H 0.96998 * 119.99972 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9031 1.0242 0.0000 4 6 2.0584 -0.7561 1.2365 5 6 3.3136 -1.5011 0.7184 6 6 2.8874 -1.9404 -0.7043 7 6 2.0571 -0.7530 -1.2340 8 6 2.9399 0.1716 -2.0747 9 6 0.9037 -1.2588 -2.0617 10 8 0.6977 -0.7939 -3.1628 11 7 0.1013 -2.2277 -1.5784 12 6 -1.0833 -2.6425 -2.3340 13 6 -1.8144 -3.7481 -1.5699 14 6 -0.8801 -4.9461 -1.3882 15 6 -2.2425 -3.2228 -0.1982 16 6 -3.0512 -4.1818 -2.3593 17 6 -3.7709 -5.2712 -1.6069 18 1 -3.3850 -5.6192 -0.6601 19 6 -4.9226 -5.8230 -2.1267 20 7 -5.3928 -5.3988 -3.2794 21 14 -5.8151 -7.1729 -1.1938 22 1 -6.8153 -6.5649 -0.2798 23 1 -6.5048 -8.0678 -2.1574 24 1 -4.8349 -7.9591 -0.4024 25 1 -0.3634 -1.0179 0.1417 26 1 -0.3634 0.6316 0.8106 27 1 -0.3634 0.3862 -0.9524 28 1 2.3297 -0.0546 2.0254 29 1 1.3133 -1.4650 1.5974 30 1 4.1710 -0.8294 0.6748 31 1 3.5344 -2.3666 1.3432 32 1 2.2771 -2.8423 -0.6584 33 1 3.7637 -2.1032 -1.3319 34 1 2.3532 1.0258 -2.4124 35 1 3.7774 0.5217 -1.4713 36 1 3.3180 -0.3742 -2.9392 37 1 0.3059 -2.6477 -0.7283 38 1 -1.7491 -1.7891 -2.4630 39 1 -0.7782 -3.0164 -3.3114 40 1 0.0013 -4.6375 -0.8259 41 1 -1.4008 -5.7336 -0.8434 42 1 -0.5750 -5.3204 -2.3654 43 1 -2.9081 -2.3694 -0.3276 44 1 -2.7638 -4.0103 0.3460 45 1 -1.3612 -2.9141 0.3640 46 1 -3.7169 -3.3285 -2.4891 47 1 -2.7458 -4.5562 -3.3363 48 1 -6.2028 -5.7872 -3.6452 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000452105588.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:37 Heat of formation + Delta-G solvation = -74.285951 kcal Electronic energy + Delta-G solvation = -23897.921426 eV Core-core repulsion = 20758.291941 eV Total energy + Delta-G solvation = -3139.629485 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = -0.92 seconds Orbital eigenvalues (eV) -40.80671 -37.91648 -36.89118 -33.58556 -32.07439 -31.49535 -31.25496 -27.29810 -26.83934 -26.52786 -25.69489 -24.27099 -22.92112 -21.44745 -20.76762 -19.29491 -17.92571 -16.55750 -16.36582 -16.01454 -15.32986 -14.91365 -14.55166 -14.48885 -14.01343 -13.71995 -13.48821 -13.13364 -12.80904 -12.71469 -12.63156 -12.42921 -12.22596 -12.06892 -11.96995 -11.56622 -11.24038 -11.15862 -11.02047 -10.91044 -10.86436 -10.78515 -10.70395 -10.64837 -10.60771 -10.39343 -10.24754 -9.86171 -9.55832 -9.11986 -8.91689 -8.58073 -8.36067 -6.00061 -4.01414 2.87895 3.30500 3.37565 3.39022 3.48901 4.33429 4.36600 4.44614 4.50265 4.97034 5.04448 5.12171 5.16278 5.25105 5.35449 5.38090 5.39527 5.53026 5.60724 5.63292 5.64776 5.72137 5.74712 5.76766 5.89614 5.90859 5.97877 6.06954 6.10010 6.14771 6.19445 6.22329 6.30068 6.33966 6.40259 6.59962 6.62617 6.80362 7.06461 7.07155 7.13396 7.64106 7.76531 7.82562 7.98732 8.40233 8.52315 9.03429 9.61761 11.11409 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.029103 B = 0.003988 C = 0.003818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 961.870146 B = 7020.054739 C = 7331.388285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.081 4.081 3 H 0.079 0.921 4 C -0.122 4.122 5 C -0.123 4.123 6 C -0.117 4.117 7 C -0.084 4.084 8 C -0.122 4.122 9 C 0.524 3.476 10 O -0.548 6.548 11 N -0.721 5.721 12 C 0.127 3.873 13 C -0.072 4.072 14 C -0.127 4.127 15 C -0.127 4.127 16 C 0.036 3.964 17 C -0.511 4.511 18 H 0.059 0.941 19 C 0.056 3.944 20 N -0.894 5.894 21 Si 0.888 3.112 22 H -0.282 1.282 23 H -0.288 1.288 24 H -0.275 1.275 25 H 0.071 0.929 26 H 0.055 0.945 27 H 0.058 0.942 28 H 0.067 0.933 29 H 0.070 0.930 30 H 0.068 0.932 31 H 0.069 0.931 32 H 0.071 0.929 33 H 0.073 0.927 34 H 0.062 0.938 35 H 0.058 0.942 36 H 0.059 0.941 37 H 0.398 0.602 38 H 0.061 0.939 39 H 0.063 0.937 40 H 0.027 0.973 41 H 0.067 0.933 42 H 0.047 0.953 43 H 0.047 0.953 44 H 0.066 0.934 45 H 0.028 0.972 46 H 0.018 0.982 47 H 0.018 0.982 48 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.962 8.952 9.229 21.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.100 4.100 3 H 0.098 0.902 4 C -0.160 4.160 5 C -0.160 4.160 6 C -0.155 4.155 7 C -0.087 4.087 8 C -0.180 4.180 9 C 0.310 3.690 10 O -0.425 6.425 11 N -0.374 5.374 12 C 0.004 3.996 13 C -0.072 4.072 14 C -0.184 4.184 15 C -0.184 4.184 16 C -0.001 4.001 17 C -0.549 4.549 18 H 0.077 0.923 19 C -0.145 4.145 20 N -0.534 5.534 21 Si 0.716 3.284 22 H -0.208 1.208 23 H -0.213 1.213 24 H -0.199 1.199 25 H 0.090 0.910 26 H 0.074 0.926 27 H 0.077 0.923 28 H 0.086 0.914 29 H 0.089 0.911 30 H 0.087 0.913 31 H 0.088 0.912 32 H 0.090 0.910 33 H 0.092 0.908 34 H 0.081 0.919 35 H 0.077 0.923 36 H 0.078 0.922 37 H 0.234 0.766 38 H 0.080 0.920 39 H 0.081 0.919 40 H 0.046 0.954 41 H 0.086 0.914 42 H 0.066 0.934 43 H 0.067 0.933 44 H 0.085 0.915 45 H 0.047 0.953 46 H 0.036 0.964 47 H 0.036 0.964 48 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 16.637 9.253 8.300 20.768 hybrid contribution -0.609 -0.953 0.753 1.359 sum 16.028 8.300 9.054 20.193 Atomic orbital electron populations 1.22260 0.94349 1.03280 1.02015 1.21793 0.96249 0.99294 0.92618 0.90241 1.22512 0.97414 0.99136 0.96921 1.22486 0.97788 1.00063 0.95675 1.22541 0.99615 0.96697 0.96665 1.21565 0.94454 0.96855 0.95796 1.21654 0.98302 0.99100 0.98907 1.20297 0.83142 0.79230 0.86299 1.90680 1.72764 1.58402 1.20686 1.46357 1.27111 1.38933 1.24977 1.21604 0.85218 0.97688 0.95054 1.20890 0.97419 0.92897 0.96012 1.21760 0.97023 0.98604 1.00999 1.21780 0.99041 1.01207 0.96382 1.19085 0.89905 0.96357 0.94768 1.21182 1.08479 1.19327 1.05932 0.92282 1.25009 0.97459 0.97021 0.94976 1.69965 1.22424 1.42745 1.18251 0.86656 0.79953 0.82098 0.79649 1.20782 1.21341 1.19949 0.90983 0.92556 0.92335 0.91418 0.91104 0.91341 0.91203 0.91030 0.90819 0.91879 0.92259 0.92203 0.76570 0.92016 0.91911 0.95378 0.91446 0.93366 0.93349 0.91454 0.95281 0.96388 0.96373 0.93046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.83 7.87 37.15 0.29 -1.54 16 2 C -0.08 -0.79 3.16 -89.50 -0.28 -1.07 16 3 H 0.08 0.73 7.67 -51.92 -0.40 0.33 16 4 C -0.12 -0.98 6.36 -25.07 -0.16 -1.14 16 5 C -0.12 -0.92 6.91 -24.74 -0.17 -1.09 16 6 C -0.12 -1.10 5.77 -25.08 -0.14 -1.24 16 7 C -0.08 -0.93 0.83 -154.54 -0.13 -1.06 16 8 C -0.12 -1.32 7.48 37.16 0.28 -1.04 16 9 C 0.52 7.88 4.64 -10.99 -0.05 7.83 16 10 O -0.55 -10.48 16.05 5.55 0.09 -10.39 16 11 N -0.72 -10.46 2.97 -60.29 -0.18 -10.64 16 12 C 0.13 2.26 4.57 -4.04 -0.02 2.24 16 13 C -0.07 -1.35 0.54 -154.51 -0.08 -1.43 16 14 C -0.13 -2.21 8.05 37.16 0.30 -1.91 16 15 C -0.13 -2.18 8.05 37.16 0.30 -1.88 16 16 C 0.04 0.89 4.04 -27.88 -0.11 0.78 16 17 C -0.51 -13.50 7.65 -34.44 -0.26 -13.76 16 18 H 0.06 1.50 5.68 -52.48 -0.30 1.20 16 19 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 20 N -0.89 -26.41 13.29 55.43 0.74 -25.68 16 21 Si 0.89 21.14 29.54 -169.99 -5.02 16.12 16 22 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 23 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 24 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 25 H 0.07 0.85 4.83 -51.93 -0.25 0.60 16 26 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.06 0.80 7.14 -51.93 -0.37 0.42 16 28 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.07 0.58 7.73 -51.93 -0.40 0.18 16 30 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.07 0.70 6.53 -51.93 -0.34 0.36 16 33 H 0.07 0.65 7.84 -51.92 -0.41 0.25 16 34 H 0.06 0.74 8.05 -51.93 -0.42 0.33 16 35 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 37 H 0.40 5.03 4.21 -40.82 -0.17 4.86 16 38 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 39 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 40 H 0.03 0.40 6.87 -51.93 -0.36 0.04 16 41 H 0.07 1.27 6.62 -51.93 -0.34 0.92 16 42 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 43 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 44 H 0.07 1.25 6.62 -51.93 -0.34 0.91 16 45 H 0.03 0.40 5.95 -51.93 -0.31 0.09 16 46 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 47 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 48 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 LS Contribution 356.30 15.07 5.37 5.37 Total: -1.00 -30.20 356.30 -7.97 -38.16 By element: Atomic # 1 Polarization: 10.54 SS G_CDS: -8.62 Total: 1.92 kcal Atomic # 6 Polarization: -14.52 SS G_CDS: -0.34 Total: -14.86 kcal Atomic # 7 Polarization: -36.87 SS G_CDS: 0.56 Total: -36.32 kcal Atomic # 8 Polarization: -10.48 SS G_CDS: 0.09 Total: -10.39 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -30.20 -7.97 -38.16 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000452105588.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.124 kcal (2) G-P(sol) polarization free energy of solvation -30.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.162 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = -0.92 seconds