Wall clock time and date at job start Tue Mar 31 2020 05:17:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09003 * 110.05575 * 2 1 4 4 C 1.54265 * 110.03469 * 121.41946 * 2 1 3 5 5 C 1.54885 * 104.19840 * 142.89093 * 4 2 1 6 6 C 1.54885 * 102.74892 * 322.06053 * 5 4 2 7 7 C 1.53873 * 110.03103 * 238.58515 * 2 1 3 8 8 C 1.52994 * 110.03522 * 0.05039 * 7 2 1 9 9 C 1.50706 * 110.02927 * 121.43171 * 7 2 1 10 10 O 1.21274 * 120.00042 * 359.72208 * 9 7 2 11 11 N 1.34777 * 119.99766 * 179.97438 * 9 7 2 12 12 C 1.46496 * 120.00266 * 179.97438 * 11 9 7 13 13 C 1.53002 * 109.47425 * 180.02562 * 12 11 9 14 14 C 1.53000 * 109.46673 * 299.99796 * 13 12 11 15 15 C 1.52997 * 109.47143 * 60.00244 * 13 12 11 16 16 C 1.52997 * 109.46965 * 180.02562 * 13 12 11 17 17 C 1.50699 * 109.46857 * 179.97438 * 16 13 12 18 18 H 1.07997 * 120.00371 * 0.02562 * 17 16 13 19 19 C 1.37882 * 119.99795 * 179.97438 * 17 16 13 20 20 N 1.31508 * 120.00253 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 119.99916 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.47000 * 60.00485 * 21 19 17 23 23 H 1.48496 * 109.47325 * 180.02562 * 21 19 17 24 24 H 1.48495 * 109.47112 * 300.00833 * 21 19 17 25 25 H 1.08996 * 109.47042 * 181.41501 * 1 2 3 26 26 H 1.09000 * 109.47021 * 301.41484 * 1 2 3 27 27 H 1.09000 * 109.47261 * 61.41297 * 1 2 3 28 28 H 1.09001 * 110.48649 * 261.57416 * 4 2 1 29 29 H 1.09007 * 110.48250 * 24.08131 * 4 2 1 30 30 H 1.09003 * 110.75251 * 80.37251 * 5 4 2 31 31 H 1.08996 * 110.75806 * 203.55437 * 5 4 2 32 32 H 1.08994 * 110.48564 * 279.26048 * 6 5 4 33 33 H 1.09004 * 110.48720 * 156.61584 * 6 5 4 34 34 H 1.08991 * 109.47656 * 180.68979 * 8 7 2 35 35 H 1.09003 * 109.46930 * 300.69431 * 8 7 2 36 36 H 1.09004 * 109.46888 * 60.68602 * 8 7 2 37 37 H 0.96999 * 120.00043 * 0.02562 * 11 9 7 38 38 H 1.09004 * 109.47212 * 300.00463 * 12 11 9 39 39 H 1.09000 * 109.46684 * 60.00307 * 12 11 9 40 40 H 1.09002 * 109.46994 * 60.00420 * 14 13 12 41 41 H 1.08998 * 109.46752 * 179.97438 * 14 13 12 42 42 H 1.08996 * 109.47966 * 299.99941 * 14 13 12 43 43 H 1.08996 * 109.46952 * 60.00137 * 15 13 12 44 44 H 1.09001 * 109.46832 * 180.02562 * 15 13 12 45 45 H 1.09002 * 109.46695 * 299.99691 * 15 13 12 46 46 H 1.09004 * 109.46976 * 299.99579 * 16 13 12 47 47 H 1.09004 * 109.47878 * 59.99710 * 16 13 12 48 48 H 0.97002 * 120.00081 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9038 1.0239 0.0000 4 6 2.0585 -0.7555 1.2368 5 6 3.3137 -1.5008 0.7190 6 6 2.8874 -1.9406 -0.7036 7 6 2.0571 -0.7535 -1.2337 8 6 0.8862 -1.2657 -2.0748 9 6 2.9276 0.1566 -2.0615 10 8 3.1120 1.3029 -1.7112 11 7 3.4970 -0.3020 -3.1937 12 6 4.3428 0.5828 -3.9987 13 6 4.8596 -0.1788 -5.2210 14 6 5.6780 -1.3867 -4.7606 15 6 3.6747 -0.6564 -6.0628 16 6 5.7434 0.7451 -6.0613 17 6 6.2529 -0.0051 -7.2648 18 1 5.9739 -1.0375 -7.4155 19 6 7.0744 0.6268 -8.1741 20 7 7.4138 1.8841 -7.9909 21 14 7.7067 -0.3034 -9.6656 22 1 6.5572 -0.7680 -10.4831 23 1 8.5644 0.5933 -10.4813 24 1 8.5013 -1.4753 -9.2179 25 1 -0.3633 -1.0273 0.0254 26 1 -0.3633 0.5357 0.8770 27 1 -0.3634 0.4917 -0.9024 28 1 2.3298 -0.0537 2.0254 29 1 1.3133 -1.4644 1.5980 30 1 4.1710 -0.8291 0.6750 31 1 3.5345 -2.3660 1.3441 32 1 2.2772 -2.8425 -0.6572 33 1 3.7637 -2.1036 -1.3311 34 1 1.2695 -1.8081 -2.9391 35 1 0.2698 -1.9323 -1.4716 36 1 0.2851 -0.4216 -2.4129 37 1 3.3462 -1.2177 -3.4760 38 1 3.7596 1.4432 -4.3270 39 1 5.1867 0.9233 -3.3988 40 1 5.0487 -2.0450 -4.1617 41 1 6.0459 -1.9295 -5.6313 42 1 6.5222 -1.0465 -4.1608 43 1 3.0917 0.2042 -6.3908 44 1 4.0429 -1.1993 -6.9333 45 1 3.0454 -1.3147 -5.4639 46 1 5.1606 1.6060 -6.3892 47 1 6.5875 1.0852 -5.4613 48 1 7.9920 2.3285 -8.6305 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000452105590.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:41 Heat of formation + Delta-G solvation = -78.143969 kcal Electronic energy + Delta-G solvation = -23428.855291 eV Core-core repulsion = 20289.058510 eV Total energy + Delta-G solvation = -3139.796781 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.63956 -38.08298 -36.75000 -33.69533 -32.24842 -31.92416 -30.84796 -27.13385 -26.52080 -26.32446 -25.61726 -25.12022 -22.98848 -21.54615 -20.40782 -18.93329 -17.86955 -16.99006 -16.29360 -15.83788 -15.50925 -14.68248 -14.51398 -14.48881 -14.09826 -13.79936 -13.59081 -13.47344 -13.17332 -12.81915 -12.74283 -12.26110 -12.06295 -11.98329 -11.82204 -11.37337 -11.17256 -11.15027 -11.00795 -10.88543 -10.87104 -10.83653 -10.75915 -10.63359 -10.43020 -10.39518 -10.26504 -9.87569 -9.57162 -9.12182 -8.92782 -8.67498 -8.35945 -5.99990 -4.01481 2.87602 3.31672 3.37177 3.37897 3.46865 4.29705 4.41781 4.44920 4.61721 4.99657 5.06263 5.13972 5.19340 5.29074 5.32549 5.35341 5.38488 5.52142 5.58938 5.63018 5.64288 5.72827 5.74365 5.76975 5.79952 5.85814 5.92996 6.10219 6.11363 6.16601 6.17955 6.22907 6.31202 6.39465 6.40428 6.59581 6.62330 6.79654 7.05985 7.06853 7.12969 7.63671 7.76277 7.80866 7.98584 8.40038 8.49795 9.03127 9.61588 11.11439 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.035909 B = 0.003433 C = 0.003417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 779.560029 B = 8155.161644 C = 8193.536680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.089 4.089 3 H 0.097 0.903 4 C -0.117 4.117 5 C -0.126 4.126 6 C -0.113 4.113 7 C -0.082 4.082 8 C -0.139 4.139 9 C 0.519 3.481 10 O -0.544 6.544 11 N -0.720 5.720 12 C 0.128 3.872 13 C -0.072 4.072 14 C -0.126 4.126 15 C -0.126 4.126 16 C 0.037 3.963 17 C -0.512 4.512 18 H 0.059 0.941 19 C 0.057 3.943 20 N -0.895 5.895 21 Si 0.889 3.111 22 H -0.278 1.278 23 H -0.288 1.288 24 H -0.278 1.278 25 H 0.056 0.944 26 H 0.052 0.948 27 H 0.057 0.943 28 H 0.064 0.936 29 H 0.065 0.935 30 H 0.068 0.932 31 H 0.067 0.933 32 H 0.076 0.924 33 H 0.070 0.930 34 H 0.057 0.943 35 H 0.069 0.931 36 H 0.063 0.937 37 H 0.397 0.603 38 H 0.062 0.938 39 H 0.062 0.938 40 H 0.028 0.972 41 H 0.067 0.933 42 H 0.047 0.953 43 H 0.047 0.953 44 H 0.067 0.933 45 H 0.028 0.972 46 H 0.018 0.982 47 H 0.018 0.982 48 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.720 -9.129 15.436 21.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.107 4.107 3 H 0.115 0.885 4 C -0.154 4.154 5 C -0.163 4.163 6 C -0.151 4.151 7 C -0.085 4.085 8 C -0.196 4.196 9 C 0.304 3.696 10 O -0.422 6.422 11 N -0.371 5.371 12 C 0.005 3.995 13 C -0.073 4.073 14 C -0.184 4.184 15 C -0.184 4.184 16 C -0.001 4.001 17 C -0.550 4.550 18 H 0.077 0.923 19 C -0.145 4.145 20 N -0.534 5.534 21 Si 0.717 3.283 22 H -0.203 1.203 23 H -0.214 1.214 24 H -0.203 1.203 25 H 0.075 0.925 26 H 0.071 0.929 27 H 0.076 0.924 28 H 0.083 0.917 29 H 0.083 0.917 30 H 0.087 0.913 31 H 0.086 0.914 32 H 0.094 0.906 33 H 0.089 0.911 34 H 0.076 0.924 35 H 0.088 0.912 36 H 0.082 0.918 37 H 0.233 0.767 38 H 0.081 0.919 39 H 0.081 0.919 40 H 0.047 0.953 41 H 0.086 0.914 42 H 0.066 0.934 43 H 0.066 0.934 44 H 0.085 0.915 45 H 0.047 0.953 46 H 0.036 0.964 47 H 0.036 0.964 48 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -12.470 -8.142 15.582 21.554 hybrid contribution 0.425 -0.808 -1.120 1.445 sum -12.044 -8.951 14.462 20.840 Atomic orbital electron populations 1.21971 0.95029 1.01471 1.01631 1.21805 0.95512 1.01245 0.92152 0.88477 1.22420 0.97057 0.98769 0.97200 1.22479 0.98156 0.99963 0.95715 1.22480 0.99313 0.96475 0.96817 1.21427 0.95568 0.95593 0.95917 1.21986 0.97031 1.01395 0.99229 1.20400 0.80008 0.88066 0.81101 1.90643 1.61894 1.19104 1.70563 1.46182 1.50377 1.16219 1.24291 1.21618 0.93320 0.92694 0.91891 1.20899 0.96275 0.96745 0.93361 1.21756 0.98762 0.97108 1.00750 1.21755 0.96605 1.00210 0.99804 1.19081 0.93594 0.93703 0.93710 1.21148 1.29130 0.97818 1.06947 0.92319 1.25012 0.96502 0.94852 0.98092 1.69953 1.36293 1.10567 1.36580 0.86711 0.78868 0.79693 0.83028 1.20323 1.21393 1.20327 0.92520 0.92927 0.92404 0.91699 0.91657 0.91347 0.91411 0.90571 0.91133 0.92431 0.91213 0.91766 0.76728 0.91932 0.91933 0.95317 0.91444 0.93380 0.93378 0.91451 0.95302 0.96380 0.96377 0.92974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.28 7.89 37.16 0.29 -0.99 16 2 C -0.09 -0.96 3.10 -89.50 -0.28 -1.24 16 3 H 0.10 1.34 6.39 -51.93 -0.33 1.01 16 4 C -0.12 -1.07 6.36 -25.07 -0.16 -1.23 16 5 C -0.13 -1.19 6.91 -24.74 -0.17 -1.36 16 6 C -0.11 -1.08 5.88 -25.07 -0.15 -1.23 16 7 C -0.08 -0.91 0.78 -154.54 -0.12 -1.03 16 8 C -0.14 -1.28 7.09 37.15 0.26 -1.02 16 9 C 0.52 7.82 6.43 -10.98 -0.07 7.75 16 10 O -0.54 -10.36 15.21 5.56 0.08 -10.28 16 11 N -0.72 -10.57 4.55 -60.29 -0.27 -10.84 16 12 C 0.13 2.29 4.56 -4.04 -0.02 2.27 16 13 C -0.07 -1.37 0.54 -154.51 -0.08 -1.46 16 14 C -0.13 -2.21 8.05 37.16 0.30 -1.92 16 15 C -0.13 -2.22 8.05 37.16 0.30 -1.92 16 16 C 0.04 0.90 4.04 -27.89 -0.11 0.79 16 17 C -0.51 -13.59 7.65 -34.44 -0.26 -13.86 16 18 H 0.06 1.49 5.68 -52.49 -0.30 1.19 16 19 C 0.06 1.57 5.46 -17.82 -0.10 1.48 16 20 N -0.89 -26.47 13.29 55.43 0.74 -25.74 16 21 Si 0.89 21.18 29.54 -169.99 -5.02 16.16 16 22 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 23 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 24 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 25 H 0.06 0.43 6.70 -51.93 -0.35 0.08 16 26 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.06 0.54 6.76 -51.93 -0.35 0.19 16 28 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.06 0.51 7.83 -51.93 -0.41 0.10 16 30 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 31 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 32 H 0.08 0.59 7.85 -51.93 -0.41 0.19 16 33 H 0.07 0.72 7.50 -51.93 -0.39 0.33 16 34 H 0.06 0.50 7.52 -51.93 -0.39 0.11 16 35 H 0.07 0.52 6.68 -51.93 -0.35 0.17 16 36 H 0.06 0.63 6.78 -51.93 -0.35 0.28 16 37 H 0.40 5.01 5.42 -40.82 -0.22 4.79 16 38 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 39 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 40 H 0.03 0.41 6.86 -51.93 -0.36 0.05 16 41 H 0.07 1.27 6.62 -51.93 -0.34 0.92 16 42 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 43 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 44 H 0.07 1.27 6.62 -51.93 -0.34 0.92 16 45 H 0.03 0.41 6.86 -51.93 -0.36 0.05 16 46 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 47 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 48 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 LS Contribution 358.48 15.07 5.40 5.40 Total: -1.00 -30.30 358.48 -8.04 -38.34 By element: Atomic # 1 Polarization: 10.50 SS G_CDS: -8.61 Total: 1.90 kcal Atomic # 6 Polarization: -14.58 SS G_CDS: -0.37 Total: -14.95 kcal Atomic # 7 Polarization: -37.04 SS G_CDS: 0.46 Total: -36.58 kcal Atomic # 8 Polarization: -10.36 SS G_CDS: 0.08 Total: -10.28 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -30.30 -8.04 -38.34 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000452105590.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.799 kcal (2) G-P(sol) polarization free energy of solvation -30.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.345 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds