Wall clock time and date at job start Tue Mar 31 2020 06:10:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.46365 * 2 1 4 4 C 1.52999 * 109.46967 * 119.99521 * 2 1 3 5 5 C 1.50700 * 109.47436 * 295.00548 * 4 2 1 6 6 O 1.21283 * 119.99786 * 359.97438 * 5 4 2 7 7 N 1.34773 * 119.99861 * 180.02562 * 5 4 2 8 8 C 1.46498 * 120.00000 * 179.97438 * 7 5 4 9 9 H 1.08995 * 110.05547 * 326.41583 * 8 7 5 10 10 C 1.54267 * 110.03218 * 87.82957 * 8 7 5 11 11 C 1.54891 * 104.19324 * 95.67887 * 10 8 7 12 12 C 1.54888 * 102.75120 * 37.94011 * 11 10 8 13 13 H 1.09001 * 110.59737 * 80.79460 * 12 11 10 14 14 C 1.50702 * 110.48734 * 203.38027 * 12 11 10 15 15 H 1.07995 * 120.00052 * 114.77886 * 14 12 11 16 16 C 1.37873 * 119.99707 * 294.77627 * 14 12 11 17 17 N 1.31512 * 119.99704 * 180.02562 * 16 14 12 18 18 Si 1.86803 * 120.00411 * 359.97438 * 16 14 12 19 19 H 1.48504 * 109.47033 * 89.99993 * 18 16 14 20 20 H 1.48500 * 109.47014 * 210.00268 * 18 16 14 21 21 H 1.48491 * 109.47069 * 329.99971 * 18 16 14 22 22 C 1.53876 * 110.03560 * 204.99827 * 8 7 5 23 23 C 1.52995 * 109.47441 * 240.00075 * 2 1 3 24 24 C 1.53001 * 109.47017 * 300.00115 * 23 2 1 25 25 C 1.52995 * 109.47333 * 59.99440 * 23 2 1 26 26 C 1.52999 * 109.47441 * 180.02562 * 23 2 1 27 27 H 1.09004 * 109.47519 * 60.00781 * 1 2 3 28 28 H 1.09009 * 109.47025 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47854 * 299.99938 * 1 2 3 30 30 H 1.09000 * 109.46800 * 174.99843 * 4 2 1 31 31 H 1.09003 * 109.46782 * 55.00377 * 4 2 1 32 32 H 0.97001 * 120.00044 * 359.97438 * 7 5 4 33 33 H 1.09004 * 110.48597 * 214.35526 * 10 8 7 34 34 H 1.08994 * 110.48679 * 337.00052 * 10 8 7 35 35 H 1.09005 * 110.75269 * 279.62515 * 11 10 8 36 36 H 1.09004 * 110.91555 * 156.33330 * 11 10 8 37 37 H 0.97010 * 120.00329 * 180.02562 * 17 16 14 38 38 H 1.08998 * 110.02768 * 0.02562 * 22 8 7 39 39 H 1.08999 * 110.02894 * 121.37915 * 22 8 7 40 40 H 1.08997 * 109.47681 * 59.99939 * 24 23 2 41 41 H 1.08997 * 109.47251 * 180.02562 * 24 23 2 42 42 H 1.09010 * 109.46863 * 299.99886 * 24 23 2 43 43 H 1.09009 * 109.47095 * 60.00189 * 25 23 2 44 44 H 1.09005 * 109.47569 * 179.97438 * 25 23 2 45 45 H 1.09005 * 109.47692 * 300.00418 * 25 23 2 46 46 H 1.08999 * 109.46844 * 59.99279 * 26 23 2 47 47 H 1.08999 * 109.47121 * 179.97438 * 26 23 2 48 48 H 1.09003 * 109.46365 * 299.99925 * 26 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0399 -0.7211 1.2493 5 6 1.6412 0.0571 2.4766 6 8 1.0115 1.0875 2.3632 7 7 1.9852 -0.3913 3.7001 8 6 1.5980 0.3656 4.8932 9 1 1.6016 1.4336 4.6758 10 6 0.1963 -0.0728 5.3653 11 6 0.4782 -1.1319 6.4598 12 6 1.7200 -0.5540 7.1830 13 1 1.4246 0.2145 7.8973 14 6 2.4844 -1.6517 7.8773 15 1 3.4836 -1.9023 7.5531 16 6 1.9081 -2.3358 8.9264 17 7 2.5753 -3.2934 9.5326 18 14 0.1800 -1.9018 9.4878 19 1 -0.8048 -2.7218 8.7373 20 1 0.0480 -2.1768 10.9411 21 1 -0.0768 -0.4620 9.2311 22 6 2.5667 0.0596 6.0490 23 6 2.0401 -0.7212 -1.2492 24 6 1.5301 -2.1637 -1.2492 25 6 1.5300 -0.0001 -2.4984 26 6 3.5700 -0.7218 -1.2489 27 1 -0.3634 0.5137 -0.8901 28 1 -0.3633 -1.0278 -0.0005 29 1 -0.3635 0.5138 0.8900 30 1 3.1263 -0.7994 1.2056 31 1 1.6053 -1.7197 1.2952 32 1 2.4891 -1.2151 3.7908 33 1 -0.3471 0.7739 5.7848 34 1 -0.3627 -0.5155 4.5410 35 1 0.7073 -2.0989 6.0117 36 1 -0.3644 -1.2159 7.1463 37 1 2.1697 -3.7751 10.2705 38 1 3.3252 -0.6516 5.7220 39 1 3.0411 0.9792 6.3918 40 1 0.4401 -2.1638 -1.2493 41 1 1.8938 -2.6777 -2.1389 42 1 1.8934 -2.6775 -0.3591 43 1 1.8933 1.0277 -2.4985 44 1 1.8938 -0.5136 -3.3885 45 1 0.4400 -0.0001 -2.4985 46 1 3.9329 -1.2358 -0.3588 47 1 3.9334 -1.2360 -2.1386 48 1 3.9336 0.3059 -1.2486 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000452560197.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:24 Heat of formation + Delta-G solvation = -92.874835 kcal Electronic energy + Delta-G solvation = -23048.389927 eV Core-core repulsion = 19907.954368 eV Total energy + Delta-G solvation = -3140.435559 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.20580 -39.56262 -38.40801 -35.18468 -33.95827 -32.74743 -30.41354 -29.82363 -28.91633 -28.11422 -27.09243 -25.44175 -23.84939 -21.88956 -21.00407 -20.77038 -19.03329 -18.87565 -18.07365 -17.06256 -16.80857 -16.18669 -16.00016 -15.87079 -15.15863 -15.03135 -14.80558 -14.61913 -14.29454 -14.05965 -13.96678 -13.89108 -13.22081 -12.91104 -12.83081 -12.74007 -12.67569 -12.60721 -12.49894 -12.31105 -12.02925 -11.96839 -11.82572 -11.61437 -11.51948 -11.33026 -11.27714 -11.22928 -11.16098 -11.02275 -10.68131 -10.53009 -9.90809 -8.27079 -6.29153 1.33655 1.37611 1.47091 1.76708 2.35593 2.36448 3.08648 3.71638 3.81760 3.86817 3.88139 3.93887 4.14371 4.16681 4.28375 4.41741 4.58972 4.62841 4.67040 4.68398 4.75211 4.76792 4.83734 4.88526 4.91971 4.94542 4.97073 5.00111 5.03354 5.10842 5.13408 5.14430 5.15908 5.25159 5.28182 5.32391 5.36262 5.45790 5.52419 5.62871 5.65681 5.66289 5.72716 5.82536 6.34195 6.70601 6.77540 7.36256 7.39139 8.89343 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.030924 B = 0.003401 C = 0.003319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 905.233771 B = 8230.992127 C = 8433.480523 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.058 4.058 3 H 0.058 0.942 4 C -0.136 4.136 5 C 0.507 3.493 6 O -0.579 6.579 7 N -0.715 5.715 8 C 0.149 3.851 9 H 0.079 0.921 10 C -0.122 4.122 11 C -0.123 4.123 12 C 0.004 3.996 13 H 0.029 0.971 14 C -0.507 4.507 15 H 0.039 0.961 16 C 0.014 3.986 17 N -0.951 5.951 18 Si 0.937 3.063 19 H -0.268 1.268 20 H -0.298 1.298 21 H -0.247 1.247 22 C -0.105 4.105 23 C -0.062 4.062 24 C -0.147 4.147 25 C -0.142 4.142 26 C -0.146 4.146 27 H 0.058 0.942 28 H 0.059 0.941 29 H 0.045 0.955 30 H 0.112 0.888 31 H 0.109 0.891 32 H 0.409 0.591 33 H 0.071 0.929 34 H 0.063 0.937 35 H 0.058 0.942 36 H 0.041 0.959 37 H 0.264 0.736 38 H 0.066 0.934 39 H 0.067 0.933 40 H 0.056 0.944 41 H 0.060 0.940 42 H 0.060 0.940 43 H 0.049 0.951 44 H 0.062 0.938 45 H 0.057 0.943 46 H 0.062 0.938 47 H 0.062 0.938 48 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.252 4.430 -23.020 23.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.077 4.077 3 H 0.076 0.924 4 C -0.176 4.176 5 C 0.296 3.704 6 O -0.459 6.459 7 N -0.367 5.367 8 C 0.044 3.956 9 H 0.097 0.903 10 C -0.161 4.161 11 C -0.161 4.161 12 C -0.015 4.015 13 H 0.047 0.953 14 C -0.545 4.545 15 H 0.057 0.943 16 C -0.183 4.183 17 N -0.592 5.592 18 Si 0.764 3.236 19 H -0.193 1.193 20 H -0.225 1.225 21 H -0.171 1.171 22 C -0.143 4.143 23 C -0.062 4.062 24 C -0.204 4.204 25 C -0.199 4.199 26 C -0.203 4.203 27 H 0.077 0.923 28 H 0.078 0.922 29 H 0.064 0.936 30 H 0.130 0.870 31 H 0.127 0.873 32 H 0.245 0.755 33 H 0.090 0.910 34 H 0.082 0.918 35 H 0.076 0.924 36 H 0.059 0.941 37 H 0.073 0.927 38 H 0.084 0.916 39 H 0.086 0.914 40 H 0.075 0.925 41 H 0.079 0.921 42 H 0.079 0.921 43 H 0.068 0.932 44 H 0.081 0.919 45 H 0.076 0.924 46 H 0.081 0.919 47 H 0.081 0.919 48 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -2.690 5.045 -22.966 23.667 hybrid contribution -0.348 -0.513 1.040 1.211 sum -3.038 4.532 -21.925 22.594 Atomic orbital electron populations 1.22002 0.95495 1.01680 1.01772 1.20821 0.95842 0.98554 0.92444 0.92375 1.21947 1.04229 1.00417 0.90987 1.21313 0.78266 0.85429 0.85393 1.90628 1.41623 1.26438 1.87200 1.46286 1.57231 1.27814 1.05357 1.21446 0.93874 0.95807 0.84482 0.90269 1.22685 0.96657 0.98785 0.97943 1.22771 0.97831 0.98495 0.96981 1.19966 0.93108 0.94513 0.93869 0.95251 1.21355 1.01275 1.16853 1.14999 0.94268 1.25799 1.01498 0.94652 0.96381 1.70044 1.39777 1.24885 1.24474 0.85968 0.80833 0.80400 0.76443 1.19334 1.22541 1.17077 1.22288 0.97470 1.00432 0.94070 1.20535 0.95782 0.95753 0.94107 1.22003 1.01251 0.94894 1.02258 1.21910 1.01218 0.99973 0.96818 1.21970 0.94191 1.01791 1.02392 0.92257 0.92241 0.93552 0.86974 0.87306 0.75476 0.90989 0.91830 0.92358 0.94087 0.92732 0.91555 0.91380 0.92476 0.92081 0.92091 0.93154 0.91908 0.92438 0.91924 0.91887 0.93065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.16 8.23 71.98 0.59 -2.57 16 2 C -0.06 -1.09 1.40 -10.80 -0.02 -1.10 16 3 H 0.06 1.32 7.95 -2.39 -0.02 1.30 16 4 C -0.14 -2.54 4.45 29.85 0.13 -2.41 16 5 C 0.51 13.54 7.54 87.66 0.66 14.20 16 6 O -0.58 -19.46 13.62 -3.04 -0.04 -19.50 16 7 N -0.72 -19.39 5.03 -439.11 -2.21 -21.60 16 8 C 0.15 4.74 3.25 45.72 0.15 4.88 16 9 H 0.08 2.58 7.57 -2.39 -0.02 2.57 16 10 C -0.12 -4.06 6.54 31.67 0.21 -3.85 16 11 C -0.12 -4.87 5.31 31.89 0.17 -4.70 16 12 C 0.00 0.20 2.28 -10.47 -0.02 0.17 16 13 H 0.03 1.32 7.06 -2.39 -0.02 1.30 16 14 C -0.51 -27.59 9.04 25.60 0.23 -27.35 16 15 H 0.04 2.34 7.79 -2.91 -0.02 2.31 16 16 C 0.01 0.77 5.46 84.65 0.46 1.23 16 17 N -0.95 -58.43 13.96 21.45 0.30 -58.13 16 18 Si 0.94 44.07 24.65 68.60 1.69 45.76 16 19 H -0.27 -12.08 7.10 99.48 0.71 -11.37 16 20 H -0.30 -14.10 7.11 99.48 0.71 -13.40 16 21 H -0.25 -10.82 6.47 99.48 0.64 -10.18 16 22 C -0.10 -3.76 6.13 31.32 0.19 -3.57 16 23 C -0.06 -0.88 0.57 -52.18 -0.03 -0.91 16 24 C -0.15 -1.90 7.77 71.98 0.56 -1.34 16 25 C -0.14 -1.94 8.12 71.98 0.58 -1.36 16 26 C -0.15 -1.91 8.13 71.98 0.59 -1.32 16 27 H 0.06 1.12 6.43 -2.38 -0.02 1.10 16 28 H 0.06 1.10 6.43 -2.38 -0.02 1.08 16 29 H 0.05 1.24 5.95 -2.39 -0.01 1.23 16 30 H 0.11 1.70 6.17 -2.39 -0.01 1.68 16 31 H 0.11 1.73 6.71 -2.39 -0.02 1.71 16 32 H 0.41 9.78 8.32 -92.71 -0.77 9.01 16 33 H 0.07 2.28 8.14 -2.38 -0.02 2.27 16 34 H 0.06 2.04 8.04 -2.39 -0.02 2.02 16 35 H 0.06 2.38 8.05 -2.38 -0.02 2.36 16 36 H 0.04 1.65 5.27 -2.38 -0.01 1.64 16 37 H 0.26 15.29 8.31 -92.70 -0.77 14.52 16 38 H 0.07 2.40 7.13 -2.39 -0.02 2.39 16 39 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 40 H 0.06 0.77 6.43 -2.39 -0.02 0.75 16 41 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 42 H 0.06 0.76 6.54 -2.38 -0.02 0.74 16 43 H 0.05 0.72 8.14 -2.38 -0.02 0.70 16 44 H 0.06 0.73 8.14 -2.38 -0.02 0.71 16 45 H 0.06 0.80 6.43 -2.38 -0.02 0.78 16 46 H 0.06 0.77 6.32 -2.39 -0.02 0.75 16 47 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 48 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 Total: -1.00 -65.43 352.06 4.30 -61.13 By element: Atomic # 1 Polarization: 22.23 SS G_CDS: 0.10 Total: 22.33 kcal Atomic # 6 Polarization: -34.46 SS G_CDS: 4.46 Total: -30.00 kcal Atomic # 7 Polarization: -77.82 SS G_CDS: -1.91 Total: -79.73 kcal Atomic # 8 Polarization: -19.46 SS G_CDS: -0.04 Total: -19.50 kcal Atomic # 14 Polarization: 44.07 SS G_CDS: 1.69 Total: 45.76 kcal Total: -65.43 4.30 -61.13 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000452560197.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.740 kcal (2) G-P(sol) polarization free energy of solvation -65.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.135 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds