Wall clock time and date at job start Tue Mar 31 2020 06:29:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46505 * 109.47479 * 2 1 4 4 C 1.46497 * 119.99819 * 274.11008 * 3 2 1 5 5 C 1.50700 * 109.47391 * 269.99965 * 4 3 2 6 6 H 1.08003 * 119.99864 * 0.02562 * 5 4 3 7 7 C 1.37879 * 120.00302 * 179.97438 * 5 4 3 8 8 N 1.31519 * 119.99548 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 119.99957 * 179.97438 * 7 5 4 10 10 H 1.48499 * 109.46995 * 90.00414 * 9 7 5 11 11 H 1.48507 * 109.46754 * 210.00248 * 9 7 5 12 12 H 1.48493 * 109.47265 * 329.99962 * 9 7 5 13 13 C 1.34770 * 119.99878 * 94.10887 * 3 2 1 14 14 O 1.21279 * 119.99872 * 183.81733 * 13 3 2 15 15 C 1.50696 * 120.00401 * 3.82614 * 13 3 2 16 16 C 1.53010 * 110.01330 * 308.35952 * 15 13 3 17 17 C 1.54270 * 110.03494 * 186.97137 * 15 13 3 18 18 C 1.54882 * 104.19184 * 264.27433 * 17 15 13 19 19 C 1.54884 * 102.75147 * 322.05472 * 18 17 15 20 20 H 1.08997 * 110.49091 * 279.13327 * 19 18 17 21 21 C 1.53008 * 110.49014 * 156.62397 * 19 18 17 22 22 C 1.53873 * 110.07568 * 69.77578 * 15 13 3 23 23 C 1.52998 * 110.03162 * 0.02562 * 22 15 13 24 24 C 1.53000 * 110.03442 * 238.59528 * 22 15 13 25 25 H 1.09005 * 109.46738 * 295.15950 * 1 2 3 26 26 H 1.09007 * 109.46890 * 55.14996 * 1 2 3 27 27 H 1.08991 * 109.47861 * 175.15131 * 1 2 3 28 28 H 1.08997 * 109.46842 * 239.99948 * 2 1 3 29 29 H 1.09000 * 109.47184 * 120.00270 * 2 1 3 30 30 H 1.08999 * 109.47362 * 30.00102 * 4 3 2 31 31 H 1.08994 * 109.47254 * 149.99555 * 4 3 2 32 32 H 0.97001 * 119.99276 * 179.97438 * 8 7 5 33 33 H 1.08995 * 109.47072 * 306.65005 * 16 15 13 34 34 H 1.09004 * 109.46649 * 66.65098 * 16 15 13 35 35 H 1.09005 * 109.47151 * 186.65025 * 16 15 13 36 36 H 1.09002 * 110.48389 * 145.59636 * 17 15 13 37 37 H 1.09003 * 110.59742 * 23.00579 * 17 15 13 38 38 H 1.09007 * 110.75491 * 203.74429 * 18 17 15 39 39 H 1.08997 * 110.91756 * 80.44331 * 18 17 15 40 40 H 1.09004 * 109.46623 * 61.45124 * 21 19 18 41 41 H 1.08995 * 109.47342 * 181.45484 * 21 19 18 42 42 H 1.08997 * 109.46786 * 301.45461 * 21 19 18 43 43 H 1.09001 * 109.47130 * 174.98236 * 23 22 15 44 44 H 1.08997 * 109.47266 * 294.98497 * 23 22 15 45 45 H 1.09002 * 109.46820 * 54.98196 * 23 22 15 46 46 H 1.09007 * 109.46789 * 324.17409 * 24 22 15 47 47 H 1.08994 * 109.47327 * 84.17101 * 24 22 15 48 48 H 1.09005 * 109.47197 * 204.17326 * 24 22 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1769 2.1021 -1.2655 5 6 3.5673 1.8768 -1.8013 6 1 4.2632 1.2582 -1.2541 7 6 3.9507 2.4597 -2.9906 8 7 3.1030 3.2126 -3.6571 9 14 5.6744 2.1810 -3.6543 10 1 5.6802 0.9802 -4.5279 11 1 6.0999 3.3670 -4.4402 12 1 6.6132 1.9744 -2.5225 13 6 2.3219 1.9886 1.1642 14 8 2.6599 3.1534 1.1703 15 6 2.2415 1.2206 2.4582 16 6 0.8771 0.5385 2.5784 17 6 2.4637 2.1720 3.6521 18 6 3.9714 2.0288 3.9763 19 6 4.2284 0.5186 3.7478 20 1 3.9110 -0.0581 4.6166 21 6 5.7079 0.2660 3.4505 22 6 3.3635 0.1694 2.5191 23 6 4.2107 0.2328 1.2467 24 6 2.7636 -1.2288 2.6808 25 1 -0.3633 0.4369 0.9302 26 1 -0.3633 0.5873 -0.8434 27 1 -0.3634 -1.0238 -0.0869 28 1 1.8932 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 1.4460 1.7358 -1.9863 31 1 2.0199 3.1677 -1.0987 32 1 3.3729 3.6229 -4.4936 33 1 0.0880 1.2779 2.4418 34 1 0.7883 -0.2334 1.8139 35 1 0.7833 0.0850 3.5652 36 1 1.8591 1.8620 4.5045 37 1 2.2294 3.1992 3.3727 38 1 4.1715 2.3023 5.0123 39 1 4.5745 2.6304 3.2962 40 1 6.3087 0.5806 4.3039 41 1 5.8654 -0.7968 3.2673 42 1 6.0034 0.8345 2.5687 43 1 5.0540 -0.4519 1.3371 44 1 3.6010 -0.0528 0.3896 45 1 4.5808 1.2485 1.1069 46 1 1.8783 -1.1733 3.3144 47 1 2.4860 -1.6205 1.7022 48 1 3.4990 -1.8888 3.1410 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000457489706.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:29:23 Heat of formation + Delta-G solvation = -9.376703 kcal Electronic energy + Delta-G solvation = -25395.894670 eV Core-core repulsion = 22259.079862 eV Total energy + Delta-G solvation = -3136.814808 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.29011 -37.55390 -35.74021 -33.37768 -32.32968 -31.86427 -30.26567 -27.85287 -27.77733 -26.65950 -23.82867 -23.55060 -23.15017 -22.51127 -20.51843 -18.65947 -17.27272 -16.60039 -16.10360 -15.82243 -15.09979 -14.82540 -14.54610 -14.11058 -13.74354 -13.56316 -13.41746 -12.89548 -12.77489 -12.59536 -12.42961 -12.08024 -11.96580 -11.77088 -11.53660 -11.39881 -11.21204 -11.03663 -10.99058 -10.90819 -10.68281 -10.55687 -10.46186 -10.35275 -10.19605 -10.11349 -10.07698 -9.98433 -9.80593 -9.52177 -8.60510 -8.39349 -7.50638 -5.99941 -4.03975 3.31068 3.37978 3.41434 3.56444 4.04247 4.47509 4.60174 4.71140 4.84224 5.17050 5.30264 5.30669 5.34091 5.45298 5.47904 5.51830 5.58309 5.64438 5.66561 5.69908 5.75543 5.82624 5.90806 5.93030 5.95811 6.03117 6.05018 6.14605 6.20739 6.24524 6.27437 6.29625 6.34880 6.42320 6.48638 6.57373 6.60671 6.67063 6.69622 6.94086 7.17928 7.53496 7.66431 7.98307 8.29909 8.56599 8.97082 9.23794 9.61243 11.08102 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.017383 B = 0.007032 C = 0.006112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1610.403266 B = 3980.932572 C = 4579.850416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.076 3.924 3 N -0.593 5.593 4 C 0.246 3.754 5 C -0.523 4.523 6 H 0.062 0.938 7 C 0.060 3.940 8 N -0.895 5.895 9 Si 0.894 3.106 10 H -0.281 1.281 11 H -0.286 1.286 12 H -0.274 1.274 13 C 0.527 3.473 14 O -0.545 6.545 15 C -0.079 4.079 16 C -0.172 4.172 17 C -0.105 4.105 18 C -0.118 4.118 19 C -0.084 4.084 20 H 0.071 0.929 21 C -0.146 4.146 22 C -0.049 4.049 23 C -0.163 4.163 24 C -0.158 4.158 25 H 0.070 0.930 26 H 0.059 0.941 27 H 0.057 0.943 28 H 0.075 0.925 29 H 0.100 0.900 30 H 0.028 0.972 31 H 0.041 0.959 32 H 0.262 0.738 33 H 0.056 0.944 34 H 0.097 0.903 35 H 0.060 0.940 36 H 0.063 0.937 37 H 0.080 0.920 38 H 0.060 0.940 39 H 0.072 0.928 40 H 0.048 0.952 41 H 0.051 0.949 42 H 0.064 0.936 43 H 0.052 0.948 44 H 0.081 0.919 45 H 0.065 0.935 46 H 0.069 0.931 47 H 0.064 0.936 48 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.500 -10.110 14.357 17.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.248 4.248 2 C -0.047 4.047 3 N -0.324 5.324 4 C 0.126 3.874 5 C -0.562 4.562 6 H 0.080 0.920 7 C -0.142 4.142 8 N -0.535 5.535 9 Si 0.722 3.278 10 H -0.207 1.207 11 H -0.212 1.212 12 H -0.199 1.199 13 C 0.314 3.686 14 O -0.423 6.423 15 C -0.082 4.082 16 C -0.228 4.228 17 C -0.143 4.143 18 C -0.155 4.155 19 C -0.102 4.102 20 H 0.089 0.911 21 C -0.203 4.203 22 C -0.049 4.049 23 C -0.220 4.220 24 C -0.214 4.214 25 H 0.088 0.912 26 H 0.078 0.922 27 H 0.076 0.924 28 H 0.093 0.907 29 H 0.117 0.883 30 H 0.046 0.954 31 H 0.059 0.941 32 H 0.071 0.929 33 H 0.075 0.925 34 H 0.115 0.885 35 H 0.078 0.922 36 H 0.081 0.919 37 H 0.099 0.901 38 H 0.079 0.921 39 H 0.091 0.909 40 H 0.067 0.933 41 H 0.070 0.930 42 H 0.083 0.917 43 H 0.071 0.929 44 H 0.100 0.900 45 H 0.084 0.916 46 H 0.087 0.913 47 H 0.082 0.918 48 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -2.343 -9.371 14.146 17.129 hybrid contribution 0.937 -0.106 -0.630 1.134 sum -1.406 -9.476 13.516 16.567 Atomic orbital electron populations 1.22721 0.97144 1.01621 1.03353 1.22195 0.93558 0.85273 1.03697 1.48134 1.63494 1.13006 1.07790 1.19227 0.96547 0.93149 0.78444 1.21511 0.98386 1.30479 1.05809 0.92010 1.24935 0.97331 0.95075 0.96821 1.69942 1.35061 1.32498 1.15978 0.86563 0.84768 0.77584 0.78914 1.20739 1.21191 1.19892 1.19978 0.77038 0.86911 0.84710 1.90626 1.47976 1.17016 1.86687 1.21482 0.96108 0.95890 0.94731 1.23075 0.95254 1.01520 1.02959 1.22296 0.96281 1.00254 0.95423 1.22520 0.96587 0.95738 1.00680 1.22010 0.94973 0.96466 0.96786 0.91109 1.21909 0.95460 1.01277 1.01685 1.21100 0.94002 0.93662 0.96153 1.22549 0.99962 1.02764 0.96717 1.22383 1.01281 0.95738 1.02017 0.91158 0.92180 0.92372 0.90700 0.88310 0.95352 0.94058 0.92859 0.92535 0.88463 0.92168 0.91859 0.90129 0.92127 0.90907 0.93316 0.92951 0.91718 0.92923 0.90037 0.91582 0.91273 0.91756 0.92683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.65 9.11 37.16 0.34 -2.31 16 2 C 0.08 1.24 3.67 -4.04 -0.01 1.22 16 3 N -0.59 -12.41 1.57 -175.07 -0.27 -12.68 16 4 C 0.25 6.43 5.21 -5.20 -0.03 6.40 16 5 C -0.52 -14.62 9.39 -34.44 -0.32 -14.95 16 6 H 0.06 1.69 6.52 -52.48 -0.34 1.35 16 7 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 8 N -0.90 -26.81 13.29 55.43 0.74 -26.07 16 9 Si 0.89 21.96 29.54 -169.99 -5.02 16.94 16 10 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 11 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 12 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 13 C 0.53 10.97 4.58 -10.99 -0.05 10.92 16 14 O -0.55 -13.84 15.02 5.56 0.08 -13.76 16 15 C -0.08 -1.22 0.61 -154.54 -0.09 -1.32 16 16 C -0.17 -2.17 5.11 37.16 0.19 -1.98 16 17 C -0.10 -1.55 5.65 -25.07 -0.14 -1.70 16 18 C -0.12 -1.65 6.33 -24.74 -0.16 -1.81 16 19 C -0.08 -1.06 2.81 -88.96 -0.25 -1.31 16 20 H 0.07 0.79 7.86 -51.93 -0.41 0.38 16 21 C -0.15 -1.80 7.98 37.16 0.30 -1.50 16 22 C -0.05 -0.68 0.56 -153.39 -0.09 -0.76 16 23 C -0.16 -2.75 5.16 37.16 0.19 -2.56 16 24 C -0.16 -1.74 7.32 37.16 0.27 -1.46 16 25 H 0.07 0.92 4.68 -51.93 -0.24 0.68 16 26 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 27 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 28 H 0.07 1.28 8.10 -51.93 -0.42 0.86 16 29 H 0.10 1.38 0.87 -51.93 -0.05 1.33 16 30 H 0.03 0.76 8.07 -51.93 -0.42 0.34 16 31 H 0.04 1.24 7.37 -51.93 -0.38 0.85 16 32 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 33 H 0.06 0.75 7.25 -51.93 -0.38 0.37 16 34 H 0.10 1.16 2.45 -51.93 -0.13 1.03 16 35 H 0.06 0.62 6.64 -51.93 -0.34 0.28 16 36 H 0.06 0.78 7.76 -51.93 -0.40 0.38 16 37 H 0.08 1.39 6.96 -51.93 -0.36 1.03 16 38 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 39 H 0.07 1.21 8.06 -51.93 -0.42 0.79 16 40 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.05 0.59 7.84 -51.93 -0.41 0.18 16 42 H 0.06 0.92 6.42 -51.93 -0.33 0.59 16 43 H 0.05 0.79 6.55 -51.93 -0.34 0.45 16 44 H 0.08 1.48 3.75 -51.93 -0.19 1.28 16 45 H 0.07 1.36 6.81 -51.93 -0.35 1.01 16 46 H 0.07 0.67 5.33 -51.93 -0.28 0.39 16 47 H 0.06 0.70 5.81 -51.93 -0.30 0.40 16 48 H 0.05 0.55 7.99 -51.93 -0.41 0.13 16 LS Contribution 333.65 15.07 5.03 5.03 Total: -1.00 -31.78 333.65 -7.14 -38.92 By element: Atomic # 1 Polarization: 10.87 SS G_CDS: -7.74 Total: 3.13 kcal Atomic # 6 Polarization: -11.55 SS G_CDS: 0.05 Total: -11.50 kcal Atomic # 7 Polarization: -39.22 SS G_CDS: 0.46 Total: -38.76 kcal Atomic # 8 Polarization: -13.84 SS G_CDS: 0.08 Total: -13.76 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -31.78 -7.14 -38.92 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457489706.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.543 kcal (2) G-P(sol) polarization free energy of solvation -31.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.920 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds