Wall clock time and date at job start Tue Mar 31 2020 05:17:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09003 * 110.43749 * 2 1 4 4 C 1.54895 * 110.48473 * 122.54156 * 2 1 3 5 5 C 1.54883 * 102.74856 * 156.61949 * 4 2 1 6 6 C 1.54266 * 104.19770 * 322.05749 * 5 4 2 7 7 C 1.52999 * 110.03725 * 142.94141 * 6 5 4 8 8 C 1.50701 * 110.03145 * 264.32955 * 6 5 4 9 9 O 1.21285 * 120.00236 * 7.40861 * 8 6 5 10 10 N 1.34779 * 119.99771 * 187.41397 * 8 6 5 11 11 C 1.46503 * 119.99849 * 179.97438 * 10 8 6 12 12 C 1.52994 * 109.47343 * 180.02562 * 11 10 8 13 13 C 1.52995 * 109.47457 * 180.02562 * 12 11 10 14 14 C 1.50699 * 109.47589 * 179.97438 * 13 12 11 15 15 H 1.08009 * 119.99703 * 359.97438 * 14 13 12 16 16 C 1.37877 * 120.00364 * 179.97438 * 14 13 12 17 17 N 1.31516 * 119.99922 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 119.99902 * 179.97438 * 16 14 13 19 19 H 1.48504 * 109.47038 * 90.00055 * 18 16 14 20 20 H 1.48496 * 109.47069 * 209.99676 * 18 16 14 21 21 H 1.48497 * 109.47243 * 330.00232 * 18 16 14 22 22 C 1.53878 * 106.59709 * 23.60620 * 6 5 4 23 23 C 1.53005 * 110.03070 * 119.28627 * 22 6 5 24 24 C 1.52997 * 110.03763 * 240.71766 * 22 6 5 25 25 H 1.08999 * 109.46730 * 298.91500 * 1 2 3 26 26 H 1.08999 * 109.46985 * 58.91267 * 1 2 3 27 27 H 1.08997 * 109.47253 * 178.91441 * 1 2 3 28 28 H 1.09004 * 110.75731 * 38.30152 * 4 2 1 29 29 H 1.09001 * 110.75162 * 274.93387 * 4 2 1 30 30 H 1.09003 * 110.48754 * 203.37842 * 5 4 2 31 31 H 1.08998 * 110.60126 * 80.78968 * 5 4 2 32 32 H 1.08995 * 109.47178 * 182.09049 * 7 6 5 33 33 H 1.09002 * 109.47334 * 302.09450 * 7 6 5 34 34 H 1.09002 * 109.46548 * 62.09193 * 7 6 5 35 35 H 0.96999 * 120.00122 * 359.97438 * 10 8 6 36 36 H 1.09011 * 109.46911 * 300.00044 * 11 10 8 37 37 H 1.08995 * 109.47427 * 59.99574 * 11 10 8 38 38 H 1.09003 * 109.47220 * 300.00145 * 12 11 10 39 39 H 1.09004 * 109.47139 * 59.99643 * 12 11 10 40 40 H 1.08998 * 109.46984 * 299.99745 * 13 12 11 41 41 H 1.08995 * 109.47448 * 59.99388 * 13 12 11 42 42 H 0.97000 * 119.99697 * 180.02562 * 17 16 14 43 43 H 1.09003 * 109.47184 * 60.00294 * 23 22 6 44 44 H 1.08994 * 109.47255 * 180.02562 * 23 22 6 45 45 H 1.08999 * 109.46911 * 300.00240 * 23 22 6 46 46 H 1.08996 * 109.46658 * 55.86050 * 24 22 6 47 47 H 1.08998 * 109.47415 * 175.86686 * 24 22 6 48 48 H 1.09000 * 109.47066 * 295.86485 * 24 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9107 1.0214 0.0000 4 6 2.0721 -0.7805 1.2232 5 6 3.4907 -1.1971 0.7616 6 6 3.3166 -1.5415 -0.7320 7 6 4.5470 -1.0896 -1.5211 8 6 3.1127 -3.0253 -0.8993 9 8 2.9706 -3.7317 0.0763 10 7 3.0885 -3.5673 -2.1330 11 6 2.8909 -5.0098 -2.2956 12 6 2.9051 -5.3620 -3.7844 13 6 2.6982 -6.8683 -3.9542 14 6 2.7115 -7.2151 -5.4207 15 1 2.8530 -6.4386 -6.1580 16 6 2.5431 -8.5236 -5.8213 17 7 2.3712 -9.4692 -4.9235 18 14 2.5589 -8.9533 -7.6391 19 1 3.9482 -9.2633 -8.0624 20 1 1.6937 -10.1367 -7.8756 21 1 2.0477 -7.8014 -8.4245 22 6 2.0699 -0.7805 -1.2162 23 6 2.4507 0.1910 -2.3353 24 6 1.0138 -1.7683 -1.7158 25 1 -0.3633 0.4969 0.8996 26 1 -0.3633 0.5306 -0.8801 27 1 -0.3633 -1.0274 -0.0195 28 1 1.4580 -1.6583 1.4244 29 1 2.1252 -0.1355 2.1003 30 1 3.8315 -2.0706 1.3173 31 1 4.1916 -0.3713 0.8834 32 1 4.3987 -1.3036 -2.5795 33 1 4.6933 -0.0182 -1.3840 34 1 5.4258 -1.6252 -1.1618 35 1 3.2019 -3.0023 -2.9133 36 1 3.6931 -5.5459 -1.7881 37 1 1.9323 -5.2963 -1.8632 38 1 2.1033 -4.8259 -4.2922 39 1 3.8641 -5.0756 -4.2164 40 1 3.4997 -7.4047 -3.4464 41 1 1.7392 -7.1543 -3.5223 42 1 2.2531 -10.3898 -5.2054 43 1 2.8774 -0.3653 -3.1699 44 1 1.5618 0.7251 -2.6708 45 1 3.1842 0.9056 -1.9620 46 1 0.7851 -2.4852 -0.9273 47 1 0.1084 -1.2258 -1.9875 48 1 1.3957 -2.2979 -2.5887 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000457528333.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:11 Heat of formation + Delta-G solvation = -72.486870 kcal Electronic energy + Delta-G solvation = -23469.631388 eV Core-core repulsion = 20330.079918 eV Total energy + Delta-G solvation = -3139.551471 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.24823 -38.13565 -35.43667 -33.60422 -33.04251 -32.32110 -31.01171 -28.32995 -27.91908 -26.48517 -24.33313 -23.81308 -23.19021 -21.32136 -20.62979 -19.56064 -18.13464 -16.65497 -16.46326 -15.88635 -15.57044 -15.20179 -14.60720 -14.45404 -14.25486 -13.84171 -13.60993 -13.48818 -13.31627 -13.01955 -12.60176 -12.35892 -12.28724 -11.88311 -11.84546 -11.73833 -11.61814 -11.47225 -11.15170 -10.92507 -10.90875 -10.78591 -10.70866 -10.60677 -10.55106 -10.49193 -10.37047 -9.85490 -9.69249 -9.26522 -9.08817 -8.64264 -8.37325 -6.01918 -4.05024 2.87609 3.30475 3.36786 3.39245 3.46865 4.22232 4.32567 4.43852 4.50005 4.88526 4.95886 5.03817 5.10105 5.16491 5.22559 5.26235 5.33849 5.36062 5.48702 5.49973 5.60989 5.63514 5.68516 5.74430 5.78039 5.79381 5.81984 5.87581 5.92500 5.95485 6.04754 6.05316 6.16751 6.18066 6.24134 6.28567 6.37686 6.55148 6.61285 6.86543 7.02072 7.63581 7.76403 7.79297 7.96923 8.37730 8.49432 9.01668 9.59157 11.09377 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.028504 B = 0.003320 C = 0.003259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 982.077165 B = 8432.039082 C = 8588.475663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.086 4.086 3 H 0.074 0.926 4 C -0.118 4.118 5 C -0.106 4.106 6 C -0.079 4.079 7 C -0.142 4.142 8 C 0.527 3.473 9 O -0.545 6.545 10 N -0.725 5.725 11 C 0.116 3.884 12 C -0.120 4.120 13 C 0.024 3.976 14 C -0.522 4.522 15 H 0.055 0.945 16 C 0.057 3.943 17 N -0.894 5.894 18 Si 0.893 3.107 19 H -0.280 1.280 20 H -0.286 1.286 21 H -0.274 1.274 22 C -0.050 4.050 23 C -0.142 4.142 24 C -0.156 4.156 25 H 0.051 0.949 26 H 0.053 0.947 27 H 0.062 0.938 28 H 0.071 0.929 29 H 0.064 0.936 30 H 0.082 0.918 31 H 0.068 0.932 32 H 0.062 0.938 33 H 0.069 0.931 34 H 0.058 0.942 35 H 0.396 0.604 36 H 0.062 0.938 37 H 0.062 0.938 38 H 0.053 0.947 39 H 0.053 0.947 40 H 0.018 0.982 41 H 0.019 0.981 42 H 0.261 0.739 43 H 0.059 0.941 44 H 0.055 0.945 45 H 0.060 0.940 46 H 0.060 0.940 47 H 0.061 0.939 48 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.257 22.665 8.712 24.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.104 4.104 3 H 0.093 0.907 4 C -0.156 4.156 5 C -0.144 4.144 6 C -0.082 4.082 7 C -0.199 4.199 8 C 0.313 3.687 9 O -0.422 6.422 10 N -0.377 5.377 11 C -0.007 4.007 12 C -0.158 4.158 13 C -0.014 4.014 14 C -0.560 4.560 15 H 0.073 0.927 16 C -0.145 4.145 17 N -0.533 5.533 18 Si 0.721 3.279 19 H -0.207 1.207 20 H -0.212 1.212 21 H -0.199 1.199 22 C -0.050 4.050 23 C -0.199 4.199 24 C -0.213 4.213 25 H 0.070 0.930 26 H 0.072 0.928 27 H 0.081 0.919 28 H 0.090 0.910 29 H 0.083 0.917 30 H 0.100 0.900 31 H 0.087 0.913 32 H 0.081 0.919 33 H 0.088 0.912 34 H 0.077 0.923 35 H 0.231 0.769 36 H 0.080 0.920 37 H 0.081 0.919 38 H 0.072 0.928 39 H 0.072 0.928 40 H 0.037 0.963 41 H 0.037 0.963 42 H 0.071 0.929 43 H 0.078 0.922 44 H 0.074 0.926 45 H 0.079 0.921 46 H 0.079 0.921 47 H 0.080 0.920 48 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 0.122 21.931 9.418 23.868 hybrid contribution 0.063 -0.177 -1.435 1.447 sum 0.185 21.754 7.983 23.173 Atomic orbital electron populations 1.21912 0.95066 1.02274 1.01143 1.22035 0.95579 0.98682 0.94099 0.90738 1.22537 0.96295 0.99806 0.96944 1.22321 0.97385 1.01683 0.92988 1.21530 0.96615 0.92097 0.97962 1.22023 0.96210 1.01835 0.99809 1.20261 0.75680 0.89563 0.83170 1.90668 1.49820 1.62918 1.38823 1.46355 1.73500 1.10080 1.07750 1.21612 1.01413 0.78699 0.98928 1.21876 1.00783 1.01498 0.91648 1.19023 0.97439 0.87892 0.97011 1.21205 1.49650 0.92982 0.92205 0.92676 1.25030 0.95285 0.96589 0.97557 1.69969 1.49442 1.00730 1.33136 0.86586 0.77938 0.77988 0.85428 1.20662 1.21204 1.19890 1.21131 0.93443 0.94964 0.95460 1.22045 1.01316 0.98736 0.97779 1.22306 0.98535 0.98692 1.01729 0.93009 0.92756 0.91946 0.91007 0.91707 0.89984 0.91308 0.91865 0.91218 0.92324 0.76887 0.91958 0.91920 0.92821 0.92827 0.96322 0.96310 0.92933 0.92162 0.92600 0.92146 0.92139 0.91968 0.91621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.25 7.98 37.16 0.30 -0.95 16 2 C -0.09 -0.76 2.91 -88.96 -0.26 -1.01 16 3 H 0.07 0.59 7.84 -51.93 -0.41 0.18 16 4 C -0.12 -1.19 6.33 -24.74 -0.16 -1.34 16 5 C -0.11 -1.14 5.65 -25.08 -0.14 -1.28 16 6 C -0.08 -0.86 0.82 -154.54 -0.13 -0.99 16 7 C -0.14 -1.27 7.01 37.16 0.26 -1.01 16 8 C 0.53 7.79 4.60 -10.98 -0.05 7.74 16 9 O -0.54 -10.21 15.47 5.55 0.09 -10.12 16 10 N -0.73 -10.45 3.88 -60.29 -0.23 -10.69 16 11 C 0.12 2.07 5.67 -4.04 -0.02 2.04 16 12 C -0.12 -2.35 5.27 -26.74 -0.14 -2.50 16 13 C 0.02 0.61 4.97 -27.89 -0.14 0.47 16 14 C -0.52 -14.61 9.11 -34.44 -0.31 -14.92 16 15 H 0.05 1.48 7.74 -52.48 -0.41 1.08 16 16 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 17 N -0.89 -26.90 13.29 55.43 0.74 -26.16 16 18 Si 0.89 21.51 29.54 -169.99 -5.02 16.49 16 19 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 20 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 21 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 22 C -0.05 -0.47 0.86 -153.39 -0.13 -0.60 16 23 C -0.14 -1.10 7.21 37.16 0.27 -0.83 16 24 C -0.16 -1.73 5.98 37.16 0.22 -1.51 16 25 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 26 H 0.05 0.42 7.84 -51.93 -0.41 0.01 16 27 H 0.06 0.60 6.41 -51.93 -0.33 0.27 16 28 H 0.07 0.86 8.06 -51.93 -0.42 0.44 16 29 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.08 1.06 6.96 -51.93 -0.36 0.70 16 31 H 0.07 0.61 7.84 -51.93 -0.41 0.20 16 32 H 0.06 0.53 5.84 -51.93 -0.30 0.22 16 33 H 0.07 0.51 6.68 -51.93 -0.35 0.16 16 34 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.40 4.79 6.69 -40.82 -0.27 4.52 16 36 H 0.06 1.19 8.14 -51.92 -0.42 0.76 16 37 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 38 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 39 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 40 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 42 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 43 H 0.06 0.45 6.76 -51.93 -0.35 0.10 16 44 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 45 H 0.06 0.41 6.70 -51.93 -0.35 0.06 16 46 H 0.06 0.81 6.84 -51.93 -0.36 0.46 16 47 H 0.06 0.61 6.61 -51.93 -0.34 0.27 16 48 H 0.06 0.76 5.85 -51.93 -0.30 0.46 16 LS Contribution 357.74 15.07 5.39 5.39 Total: -1.00 -31.38 357.74 -8.30 -39.68 By element: Atomic # 1 Polarization: 9.30 SS G_CDS: -8.73 Total: 0.57 kcal Atomic # 6 Polarization: -14.62 SS G_CDS: -0.53 Total: -15.16 kcal Atomic # 7 Polarization: -37.35 SS G_CDS: 0.50 Total: -36.85 kcal Atomic # 8 Polarization: -10.21 SS G_CDS: 0.09 Total: -10.12 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -31.38 -8.30 -39.68 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457528333.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.802 kcal (2) G-P(sol) polarization free energy of solvation -31.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.685 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds