Wall clock time and date at job start Tue Mar 31 2020 05:45:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52999 * 109.47049 * 2 1 4 4 C 1.53006 * 109.46888 * 120.00074 * 2 1 3 5 5 C 1.52996 * 109.47317 * 64.99821 * 4 2 1 6 6 N 1.46494 * 109.46946 * 179.97438 * 5 4 2 7 7 C 1.46501 * 120.00355 * 269.99842 * 6 5 4 8 8 C 1.50698 * 109.47345 * 266.15638 * 7 6 5 9 9 H 1.07997 * 120.00271 * 0.02562 * 8 7 6 10 10 C 1.37877 * 119.99717 * 179.97438 * 8 7 6 11 11 N 1.31512 * 120.00317 * 0.02562 * 10 8 7 12 12 Si 1.86803 * 119.99782 * 180.02562 * 10 8 7 13 13 H 1.48498 * 109.47374 * 89.99698 * 12 10 8 14 14 H 1.48498 * 109.47153 * 210.00087 * 12 10 8 15 15 H 1.48500 * 109.47155 * 329.99726 * 12 10 8 16 16 C 1.34779 * 119.99822 * 90.00793 * 6 5 4 17 17 O 1.21280 * 120.00115 * 4.75195 * 16 6 5 18 18 C 1.50703 * 120.00171 * 184.76046 * 16 6 5 19 19 H 1.08997 * 109.47071 * 26.56657 * 18 16 6 20 20 C 1.53004 * 109.46429 * 266.57015 * 18 16 6 21 21 C 1.52997 * 109.47216 * 146.57305 * 18 16 6 22 22 C 1.53787 * 113.61158 * 277.49193 * 21 18 16 23 23 C 1.53784 * 87.08131 * 220.02190 * 22 21 18 24 24 C 1.53787 * 113.61018 * 179.97438 * 21 18 16 25 25 H 1.09003 * 109.47112 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.46892 * 300.00155 * 1 2 3 27 27 H 1.08996 * 109.47148 * 59.99829 * 1 2 3 28 28 H 1.08999 * 109.46892 * 239.99845 * 2 1 3 29 29 H 1.08999 * 109.46890 * 179.97438 * 3 2 1 30 30 H 1.08996 * 109.47286 * 300.00087 * 3 2 1 31 31 H 1.08999 * 109.47401 * 60.00156 * 3 2 1 32 32 H 1.08997 * 109.46718 * 304.99507 * 4 2 1 33 33 H 1.08998 * 109.46776 * 185.00074 * 4 2 1 34 34 H 1.09005 * 109.46922 * 59.99847 * 5 4 2 35 35 H 1.08998 * 109.47404 * 299.99868 * 5 4 2 36 36 H 1.08999 * 109.46824 * 26.15824 * 7 6 5 37 37 H 1.09000 * 109.46999 * 146.15753 * 7 6 5 38 38 H 0.97001 * 119.99706 * 180.02562 * 11 10 8 39 39 H 1.08992 * 109.47208 * 60.94461 * 20 18 16 40 40 H 1.09001 * 109.46748 * 180.94118 * 20 18 16 41 41 H 1.09000 * 109.47235 * 300.93841 * 20 18 16 42 42 H 1.08997 * 112.85520 * 48.80109 * 21 18 16 43 43 H 1.09003 * 113.61149 * 334.57051 * 22 21 18 44 44 H 1.08999 * 113.60915 * 105.47158 * 22 21 18 45 45 H 1.08999 * 113.60940 * 270.88733 * 23 22 21 46 46 H 1.09000 * 113.68882 * 139.98973 * 23 22 21 47 47 H 1.08995 * 113.60983 * 254.52242 * 24 21 18 48 48 H 1.08995 * 113.61795 * 25.42991 * 24 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 1.6352 -2.1955 1.1881 6 7 2.1241 -2.8861 2.3839 7 6 3.4523 -3.5042 2.3815 8 6 3.3296 -4.9572 2.0012 9 1 2.3593 -5.3782 1.7828 10 6 4.4562 -5.7490 1.9312 11 7 5.6378 -5.2363 2.1967 12 14 4.3041 -7.5500 1.4591 13 1 4.4191 -7.6868 -0.0151 14 1 5.3871 -8.3266 2.1144 15 1 2.9852 -8.0684 1.9029 16 6 1.3517 -2.9531 3.4864 17 8 0.2200 -2.5179 3.4614 18 6 1.8944 -3.5686 4.7504 19 1 2.9798 -3.4696 4.7658 20 6 1.5167 -5.0505 4.7989 21 6 1.2995 -2.8508 5.9635 22 6 2.0275 -1.5453 6.3249 23 6 1.8546 -1.9491 7.7987 24 6 1.7915 -3.4064 7.3105 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 1.8934 -0.5139 -0.8900 29 1 3.1300 1.4425 0.0005 30 1 1.6767 1.9563 -0.8899 31 1 1.6768 1.9564 0.8900 32 1 1.6054 -0.2617 2.1370 33 1 3.1263 -0.6444 1.2952 34 1 2.0699 -2.6550 0.3003 35 1 0.5489 -2.2724 1.1422 36 1 4.0897 -2.9925 1.6604 37 1 3.8919 -3.4247 3.3757 38 1 6.4304 -5.7933 2.1470 39 1 1.9545 -5.5652 3.9436 40 1 1.8949 -5.4918 5.7210 41 1 0.4318 -5.1502 4.7666 42 1 0.2162 -2.7461 5.9042 43 1 3.0671 -1.5203 5.9982 44 1 1.4747 -0.6468 6.0506 45 1 0.9230 -1.5965 8.2415 46 1 2.7257 -1.7329 8.4171 47 1 1.0482 -4.0098 7.8315 48 1 2.7664 -3.8903 7.2533 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000457540027.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:45:04 Heat of formation + Delta-G solvation = -53.270914 kcal Electronic energy + Delta-G solvation = -23653.157237 eV Core-core repulsion = 20514.439032 eV Total energy + Delta-G solvation = -3138.718204 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 2.99 seconds Orbital eigenvalues (eV) -39.71834 -38.04559 -36.42803 -34.67695 -32.58330 -32.16682 -29.05373 -27.01433 -26.92586 -25.79088 -24.87506 -23.72095 -23.00839 -21.41321 -19.73445 -19.09014 -18.03533 -16.54872 -16.27712 -15.66992 -15.06814 -14.88135 -14.48241 -14.36750 -14.11673 -13.58549 -13.26453 -13.04725 -12.56193 -12.36796 -12.24737 -12.20342 -12.09213 -11.97465 -11.64172 -11.44737 -11.40905 -11.19084 -10.99307 -10.96308 -10.87006 -10.69418 -10.54939 -10.45564 -10.25167 -10.07784 -9.98699 -9.90153 -9.73503 -9.62038 -8.78549 -8.50368 -7.62340 -6.17886 -4.23993 3.22089 3.29704 3.32551 3.54291 4.00216 4.34046 4.89591 4.94595 5.01894 5.07736 5.13140 5.14920 5.16220 5.19857 5.54014 5.71062 5.73274 5.74430 5.85580 5.86068 5.92198 5.99448 6.00945 6.03475 6.06061 6.07665 6.10457 6.14222 6.17483 6.26911 6.30639 6.36786 6.41360 6.43957 6.54205 6.63097 6.68210 6.72299 6.80995 6.91552 7.03752 7.25097 7.61370 7.78602 8.08260 8.42645 8.82050 9.14219 9.43016 10.88618 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.009125 B = 0.007556 C = 0.004697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3067.822401 B = 3704.712775 C = 5959.862623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.094 4.094 3 C -0.144 4.144 4 C -0.126 4.126 5 C 0.118 3.882 6 N -0.597 5.597 7 C 0.237 3.763 8 C -0.532 4.532 9 H 0.061 0.939 10 C 0.066 3.934 11 N -0.891 5.891 12 Si 0.892 3.108 13 H -0.280 1.280 14 H -0.285 1.285 15 H -0.272 1.272 16 C 0.525 3.475 17 O -0.578 6.578 18 C -0.094 4.094 19 H 0.096 0.904 20 C -0.140 4.140 21 C -0.092 4.092 22 C -0.138 4.138 23 C -0.142 4.142 24 C -0.134 4.134 25 H 0.058 0.942 26 H 0.053 0.947 27 H 0.047 0.953 28 H 0.069 0.931 29 H 0.053 0.947 30 H 0.050 0.950 31 H 0.051 0.949 32 H 0.060 0.940 33 H 0.062 0.938 34 H 0.072 0.928 35 H 0.073 0.927 36 H 0.034 0.966 37 H 0.038 0.962 38 H 0.265 0.735 39 H 0.086 0.914 40 H 0.055 0.945 41 H 0.046 0.954 42 H 0.095 0.905 43 H 0.080 0.920 44 H 0.062 0.938 45 H 0.075 0.925 46 H 0.063 0.937 47 H 0.063 0.937 48 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.152 7.563 3.269 9.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.113 4.113 3 C -0.202 4.202 4 C -0.165 4.165 5 C -0.006 4.006 6 N -0.327 5.327 7 C 0.118 3.882 8 C -0.571 4.571 9 H 0.079 0.921 10 C -0.137 4.137 11 N -0.529 5.529 12 Si 0.720 3.280 13 H -0.206 1.206 14 H -0.211 1.211 15 H -0.197 1.197 16 C 0.314 3.686 17 O -0.459 6.459 18 C -0.115 4.115 19 H 0.114 0.886 20 C -0.198 4.198 21 C -0.111 4.111 22 C -0.176 4.176 23 C -0.179 4.179 24 C -0.172 4.172 25 H 0.077 0.923 26 H 0.072 0.928 27 H 0.067 0.933 28 H 0.088 0.912 29 H 0.072 0.928 30 H 0.069 0.931 31 H 0.071 0.929 32 H 0.079 0.921 33 H 0.081 0.919 34 H 0.091 0.909 35 H 0.091 0.909 36 H 0.052 0.948 37 H 0.056 0.944 38 H 0.074 0.926 39 H 0.105 0.895 40 H 0.074 0.926 41 H 0.065 0.935 42 H 0.113 0.887 43 H 0.098 0.902 44 H 0.081 0.919 45 H 0.093 0.907 46 H 0.082 0.918 47 H 0.081 0.919 48 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -5.508 7.731 3.250 10.034 hybrid contribution 0.243 -1.073 -0.381 1.164 sum -5.265 6.658 2.869 8.960 Atomic orbital electron populations 1.21871 0.95382 1.02061 1.01066 1.21055 0.95819 0.95880 0.98561 1.21819 1.00890 0.96230 1.01234 1.21989 1.00969 0.96068 0.97478 1.21333 0.99883 0.90931 0.88450 1.48240 1.19398 1.53277 1.11755 1.19433 0.77778 0.92707 0.98331 1.21474 0.93617 0.94561 1.47407 0.92058 1.24917 0.95103 0.98686 0.94996 1.69919 0.98127 1.36432 1.48437 0.86581 0.77978 0.84731 0.78746 1.20572 1.21064 1.19685 1.20466 0.84957 0.78000 0.85157 1.90545 1.19298 1.50925 1.85171 1.21214 1.01864 0.96642 0.91777 0.88597 1.21730 1.00766 0.93779 1.03508 1.22452 1.00452 0.95307 0.92880 1.22960 1.00857 0.97881 0.95867 1.22791 1.01361 0.97195 0.96583 1.22938 1.01604 0.96037 0.96578 0.92259 0.92826 0.93341 0.91226 0.92786 0.93091 0.92946 0.92133 0.91918 0.90924 0.90874 0.94807 0.94376 0.92571 0.89509 0.92635 0.93524 0.88697 0.90185 0.91946 0.90670 0.91844 0.91854 0.89939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.89 8.95 37.16 0.33 -1.56 16 2 C -0.09 -1.26 2.92 -90.61 -0.26 -1.52 16 3 C -0.14 -1.68 9.19 37.16 0.34 -1.34 16 4 C -0.13 -2.04 5.01 -26.73 -0.13 -2.18 16 5 C 0.12 2.21 5.18 -4.05 -0.02 2.18 16 6 N -0.60 -12.64 2.46 -175.06 -0.43 -13.08 16 7 C 0.24 5.56 4.99 -5.19 -0.03 5.54 16 8 C -0.53 -13.52 7.60 -34.44 -0.26 -13.78 16 9 H 0.06 1.60 7.57 -52.49 -0.40 1.20 16 10 C 0.07 1.71 5.46 -17.82 -0.10 1.61 16 11 N -0.89 -24.15 13.29 55.43 0.74 -23.41 16 12 Si 0.89 20.32 29.54 -169.99 -5.02 15.30 16 13 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 14 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 15 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 16 C 0.53 11.10 6.65 -10.98 -0.07 11.03 16 17 O -0.58 -13.22 15.67 5.56 0.09 -13.13 16 18 C -0.09 -1.76 1.92 -91.77 -0.18 -1.94 16 19 H 0.10 1.89 5.64 -51.93 -0.29 1.60 16 20 C -0.14 -2.59 8.99 37.16 0.33 -2.26 16 21 C -0.09 -1.49 2.89 -89.80 -0.26 -1.75 16 22 C -0.14 -2.03 7.62 -25.91 -0.20 -2.23 16 23 C -0.14 -1.76 8.08 -25.89 -0.21 -1.97 16 24 C -0.13 -1.81 6.66 -25.89 -0.17 -1.99 16 25 H 0.06 0.81 6.56 -51.93 -0.34 0.47 16 26 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 28 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 29 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 33 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 34 H 0.07 1.36 8.07 -51.93 -0.42 0.94 16 35 H 0.07 1.40 5.79 -51.93 -0.30 1.10 16 36 H 0.03 0.84 8.04 -51.93 -0.42 0.42 16 37 H 0.04 0.93 5.83 -51.93 -0.30 0.62 16 38 H 0.26 6.86 8.31 -40.82 -0.34 6.52 16 39 H 0.09 1.83 5.98 -51.93 -0.31 1.52 16 40 H 0.05 0.90 7.41 -51.93 -0.38 0.51 16 41 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 42 H 0.09 1.64 7.63 -51.93 -0.40 1.25 16 43 H 0.08 1.20 7.96 -51.93 -0.41 0.78 16 44 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 45 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 46 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 47 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 48 H 0.08 1.12 8.10 -51.93 -0.42 0.70 16 LS Contribution 373.13 15.07 5.62 5.62 Total: -1.00 -27.44 373.13 -8.92 -36.36 By element: Atomic # 1 Polarization: 13.50 SS G_CDS: -9.03 Total: 4.47 kcal Atomic # 6 Polarization: -11.25 SS G_CDS: -0.88 Total: -12.13 kcal Atomic # 7 Polarization: -36.79 SS G_CDS: 0.30 Total: -36.49 kcal Atomic # 8 Polarization: -13.22 SS G_CDS: 0.09 Total: -13.13 kcal Atomic # 14 Polarization: 20.32 SS G_CDS: -5.02 Total: 15.30 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -27.44 -8.92 -36.36 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457540027.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.916 kcal (2) G-P(sol) polarization free energy of solvation -27.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.355 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.99 seconds