Wall clock time and date at job start Tue Mar 31 2020 05:45:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52998 * 109.47214 * 2 1 4 4 C 1.53000 * 109.47453 * 119.99903 * 2 1 3 5 5 C 1.53002 * 109.47120 * 64.99951 * 4 2 1 6 6 N 1.46506 * 109.46888 * 180.02562 * 5 4 2 7 7 C 1.46501 * 119.99534 * 269.99558 * 6 5 4 8 8 C 1.50694 * 109.47260 * 264.49037 * 7 6 5 9 9 H 1.08000 * 120.00162 * 359.97438 * 8 7 6 10 10 C 1.37880 * 120.00052 * 180.02562 * 8 7 6 11 11 N 1.31519 * 119.99851 * 359.97438 * 10 8 7 12 12 Si 1.86798 * 119.99990 * 179.97438 * 10 8 7 13 13 H 1.48494 * 109.46930 * 60.00173 * 12 10 8 14 14 H 1.48503 * 109.46720 * 179.97438 * 12 10 8 15 15 H 1.48499 * 109.47374 * 299.99977 * 12 10 8 16 16 C 1.34771 * 120.00296 * 90.00072 * 6 5 4 17 17 O 1.21288 * 119.99655 * 4.85784 * 16 6 5 18 18 C 1.50698 * 120.00140 * 184.85718 * 16 6 5 19 19 H 1.09000 * 109.47032 * 317.83695 * 18 16 6 20 20 C 1.53001 * 109.46956 * 77.83149 * 18 16 6 21 21 C 1.52999 * 109.47112 * 197.83323 * 18 16 6 22 22 C 1.53783 * 113.61642 * 80.86482 * 21 18 16 23 23 C 1.54051 * 86.98623 * 140.01716 * 22 21 18 24 24 C 1.53778 * 113.61158 * 178.47079 * 21 18 16 25 25 H 1.08995 * 109.47375 * 60.00787 * 1 2 3 26 26 H 1.09010 * 109.46923 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47308 * 299.99816 * 1 2 3 28 28 H 1.09007 * 109.47481 * 239.99798 * 2 1 3 29 29 H 1.08998 * 109.47310 * 180.02562 * 3 2 1 30 30 H 1.09006 * 109.46783 * 299.99877 * 3 2 1 31 31 H 1.09001 * 109.47496 * 59.99540 * 3 2 1 32 32 H 1.09007 * 109.46766 * 305.00116 * 4 2 1 33 33 H 1.09003 * 109.47474 * 185.00474 * 4 2 1 34 34 H 1.08990 * 109.47123 * 60.00532 * 5 4 2 35 35 H 1.09001 * 109.46756 * 300.00165 * 5 4 2 36 36 H 1.08998 * 109.46958 * 24.49273 * 7 6 5 37 37 H 1.08998 * 109.46622 * 144.48992 * 7 6 5 38 38 H 0.96995 * 119.99778 * 179.97438 * 11 10 8 39 39 H 1.09004 * 109.46956 * 54.20353 * 20 18 16 40 40 H 1.09003 * 109.47203 * 174.19574 * 20 18 16 41 41 H 1.08995 * 109.47259 * 294.19615 * 20 18 16 42 42 H 1.08996 * 112.85274 * 309.66642 * 21 18 16 43 43 H 1.08998 * 113.61335 * 254.61662 * 22 21 18 44 44 H 1.09005 * 113.61043 * 25.51290 * 22 21 18 45 45 H 1.09004 * 113.61866 * 220.02073 * 23 22 21 46 46 H 1.08997 * 113.69036 * 89.12920 * 23 22 21 47 47 H 1.09004 * 113.62048 * 334.48512 * 24 21 18 48 48 H 1.09005 * 113.61526 * 105.38736 * 24 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.6353 -2.1955 1.1880 6 7 2.1232 -2.8859 2.3845 7 6 3.4515 -3.5039 2.3830 8 6 3.3247 -4.9665 2.0430 9 1 2.3519 -5.3932 1.8479 10 6 4.4504 -5.7603 1.9819 11 7 5.6350 -5.2408 2.2199 12 14 4.2931 -7.5734 1.5611 13 1 3.6788 -7.7180 0.2169 14 1 5.6395 -8.1997 1.5595 15 1 3.4360 -8.2436 2.5717 16 6 1.3502 -2.9525 3.4865 17 8 0.2178 -2.5190 3.4599 18 6 1.8928 -3.5658 4.7516 19 1 2.4545 -4.4672 4.5065 20 6 2.8152 -2.5640 5.4491 21 6 0.7329 -3.9249 5.6824 22 6 0.0459 -5.2539 5.3263 23 6 -0.0371 -5.5231 6.8408 24 6 1.1793 -4.5947 6.9927 25 1 -0.3634 0.5137 -0.8900 26 1 -0.3633 -1.0278 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.8934 -0.5139 -0.8900 29 1 3.1300 1.4425 -0.0005 30 1 1.6766 1.9563 -0.8901 31 1 1.6766 1.9564 0.8899 32 1 1.6054 -0.2616 2.1370 33 1 3.1264 -0.6442 1.2952 34 1 2.0699 -2.6550 0.3004 35 1 0.5490 -2.2723 1.1421 36 1 4.0804 -3.0116 1.6413 37 1 3.9025 -3.3980 3.3697 38 1 6.4269 -5.7993 2.1773 39 1 2.2827 -1.6251 5.6016 40 1 3.1257 -2.9663 6.4133 41 1 3.6940 -2.3867 4.8293 42 1 0.0367 -3.0992 5.8293 43 1 -0.9263 -5.1288 4.8496 44 1 0.6930 -5.9509 4.7937 45 1 0.1674 -6.5588 7.1121 46 1 -0.9434 -5.1350 7.3056 47 1 2.1358 -5.1118 6.9151 48 1 1.1215 -3.9378 7.8607 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000457540029.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:45:13 Heat of formation + Delta-G solvation = -54.496131 kcal Electronic energy + Delta-G solvation = -23639.612993 eV Core-core repulsion = 20500.841660 eV Total energy + Delta-G solvation = -3138.771334 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 2.38 seconds Orbital eigenvalues (eV) -39.70122 -37.98943 -36.40968 -34.67934 -32.54295 -32.30601 -29.04778 -27.01170 -26.87858 -25.77514 -24.87569 -23.67645 -23.04482 -21.36077 -19.74194 -19.02349 -18.02450 -16.69739 -16.11443 -15.61587 -15.02272 -14.83834 -14.45984 -14.35460 -14.22143 -13.59373 -13.23302 -13.08696 -12.80559 -12.32637 -12.19837 -12.12831 -12.07211 -11.95008 -11.69536 -11.53426 -11.35272 -11.21542 -11.00235 -10.95355 -10.75786 -10.63307 -10.58282 -10.46398 -10.24923 -10.09580 -9.92132 -9.90295 -9.73603 -9.65364 -8.78471 -8.52074 -7.61240 -6.17524 -4.24625 3.23889 3.28936 3.31554 3.54820 4.01440 4.34363 4.95521 5.00636 5.06544 5.09984 5.15189 5.15429 5.16802 5.24092 5.50779 5.66837 5.72561 5.74328 5.85444 5.91147 5.92011 5.94336 5.99818 6.04473 6.09210 6.11671 6.14616 6.15066 6.18041 6.30333 6.31888 6.36850 6.39240 6.41724 6.54784 6.58502 6.66979 6.71699 6.73091 6.84955 7.00880 7.26246 7.62883 7.79164 8.09167 8.43307 8.82480 9.14860 9.43380 10.88799 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.010125 B = 0.006985 C = 0.004744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2764.862770 B = 4007.639270 C = 5901.189239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.094 4.094 3 C -0.144 4.144 4 C -0.126 4.126 5 C 0.117 3.883 6 N -0.597 5.597 7 C 0.235 3.765 8 C -0.537 4.537 9 H 0.059 0.941 10 C 0.066 3.934 11 N -0.891 5.891 12 Si 0.894 3.106 13 H -0.276 1.276 14 H -0.286 1.286 15 H -0.275 1.275 16 C 0.526 3.474 17 O -0.577 6.577 18 C -0.102 4.102 19 H 0.111 0.889 20 C -0.137 4.137 21 C -0.086 4.086 22 C -0.135 4.135 23 C -0.143 4.143 24 C -0.135 4.135 25 H 0.047 0.953 26 H 0.058 0.942 27 H 0.053 0.947 28 H 0.069 0.931 29 H 0.053 0.947 30 H 0.050 0.950 31 H 0.051 0.949 32 H 0.060 0.940 33 H 0.062 0.938 34 H 0.072 0.928 35 H 0.073 0.927 36 H 0.034 0.966 37 H 0.043 0.957 38 H 0.265 0.735 39 H 0.048 0.952 40 H 0.061 0.939 41 H 0.066 0.934 42 H 0.092 0.908 43 H 0.063 0.937 44 H 0.083 0.917 45 H 0.062 0.938 46 H 0.074 0.926 47 H 0.082 0.918 48 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.896 6.195 2.946 9.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.113 4.113 3 C -0.202 4.202 4 C -0.165 4.165 5 C -0.006 4.006 6 N -0.327 5.327 7 C 0.115 3.885 8 C -0.576 4.576 9 H 0.077 0.923 10 C -0.137 4.137 11 N -0.529 5.529 12 Si 0.721 3.279 13 H -0.202 1.202 14 H -0.211 1.211 15 H -0.200 1.200 16 C 0.315 3.685 17 O -0.458 6.458 18 C -0.123 4.123 19 H 0.129 0.871 20 C -0.194 4.194 21 C -0.105 4.105 22 C -0.173 4.173 23 C -0.180 4.180 24 C -0.173 4.173 25 H 0.067 0.933 26 H 0.077 0.923 27 H 0.072 0.928 28 H 0.088 0.912 29 H 0.072 0.928 30 H 0.069 0.931 31 H 0.071 0.929 32 H 0.079 0.921 33 H 0.081 0.919 34 H 0.090 0.910 35 H 0.091 0.909 36 H 0.052 0.948 37 H 0.061 0.939 38 H 0.075 0.925 39 H 0.067 0.933 40 H 0.080 0.920 41 H 0.085 0.915 42 H 0.110 0.890 43 H 0.081 0.919 44 H 0.101 0.899 45 H 0.081 0.919 46 H 0.092 0.908 47 H 0.101 0.899 48 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -6.246 6.365 2.923 9.385 hybrid contribution 0.212 -1.111 -0.392 1.197 sum -6.034 5.254 2.531 8.392 Atomic orbital electron populations 1.21869 0.95378 1.02066 1.01065 1.21053 0.95822 0.95878 0.98561 1.21821 1.00891 0.96232 1.01236 1.21994 1.00965 0.96080 0.97470 1.21337 0.99905 0.90930 0.88452 1.48219 1.19433 1.53369 1.11675 1.19490 0.77777 0.92549 0.98693 1.21487 0.93524 0.93975 1.48579 0.92251 1.24922 0.95078 0.98760 0.94930 1.69911 0.98012 1.36335 1.48674 0.86618 0.77248 0.84801 0.79214 1.20180 1.21139 1.20036 1.20442 0.84855 0.78098 0.85139 1.90549 1.19237 1.50869 1.85159 1.21300 0.97177 1.01186 0.92668 0.87077 1.21692 0.99165 0.98076 1.00473 1.22330 0.96633 0.97139 0.94417 1.22973 1.01039 0.97629 0.95626 1.22835 0.98406 0.99446 0.97339 1.22944 0.98361 0.98527 0.97447 0.93341 0.92257 0.92824 0.91232 0.92783 0.93096 0.92938 0.92148 0.91915 0.90970 0.90868 0.94840 0.93948 0.92506 0.93252 0.92049 0.91550 0.88989 0.91866 0.89876 0.91911 0.90756 0.89939 0.92007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.89 8.95 37.16 0.33 -1.56 16 2 C -0.09 -1.26 2.92 -90.62 -0.26 -1.52 16 3 C -0.14 -1.68 9.19 37.16 0.34 -1.34 16 4 C -0.13 -2.04 5.01 -26.73 -0.13 -2.18 16 5 C 0.12 2.20 5.18 -4.04 -0.02 2.18 16 6 N -0.60 -12.67 2.47 -175.06 -0.43 -13.10 16 7 C 0.23 5.52 4.81 -5.20 -0.02 5.50 16 8 C -0.54 -13.89 8.64 -34.44 -0.30 -14.18 16 9 H 0.06 1.58 7.81 -52.49 -0.41 1.17 16 10 C 0.07 1.73 5.46 -17.82 -0.10 1.64 16 11 N -0.89 -24.28 13.29 55.43 0.74 -23.54 16 12 Si 0.89 20.51 29.54 -169.99 -5.02 15.49 16 13 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 14 H -0.29 -6.51 7.11 56.52 0.40 -6.10 16 15 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 16 C 0.53 11.10 6.77 -10.99 -0.07 11.03 16 17 O -0.58 -13.12 15.44 5.55 0.09 -13.03 16 18 C -0.10 -1.91 1.61 -91.77 -0.15 -2.06 16 19 H 0.11 2.32 6.47 -51.93 -0.34 1.98 16 20 C -0.14 -2.26 8.88 37.16 0.33 -1.93 16 21 C -0.09 -1.43 2.67 -89.81 -0.24 -1.67 16 22 C -0.14 -2.20 7.63 -25.78 -0.20 -2.40 16 23 C -0.14 -1.91 8.09 -25.78 -0.21 -2.12 16 24 C -0.14 -1.88 6.64 -25.92 -0.17 -2.05 16 25 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 26 H 0.06 0.81 6.56 -51.92 -0.34 0.47 16 27 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 28 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 29 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 30 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 33 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 34 H 0.07 1.36 8.07 -51.93 -0.42 0.94 16 35 H 0.07 1.41 5.78 -51.93 -0.30 1.11 16 36 H 0.03 0.83 8.03 -51.93 -0.42 0.42 16 37 H 0.04 1.02 4.91 -51.93 -0.25 0.76 16 38 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 39 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.06 0.89 7.31 -51.93 -0.38 0.51 16 41 H 0.07 1.17 6.29 -51.93 -0.33 0.84 16 42 H 0.09 1.60 7.70 -51.93 -0.40 1.20 16 43 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 44 H 0.08 1.45 7.99 -51.93 -0.41 1.04 16 45 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 46 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 47 H 0.08 1.16 8.10 -51.93 -0.42 0.74 16 48 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 LS Contribution 373.68 15.07 5.63 5.63 Total: -1.00 -27.67 373.68 -8.92 -36.60 By element: Atomic # 1 Polarization: 13.66 SS G_CDS: -9.05 Total: 4.61 kcal Atomic # 6 Polarization: -11.79 SS G_CDS: -0.87 Total: -12.66 kcal Atomic # 7 Polarization: -36.94 SS G_CDS: 0.30 Total: -36.64 kcal Atomic # 8 Polarization: -13.12 SS G_CDS: 0.09 Total: -13.03 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.02 Total: 15.49 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -27.67 -8.92 -36.60 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457540029.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.898 kcal (2) G-P(sol) polarization free energy of solvation -27.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.598 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.38 seconds