Wall clock time and date at job start Tue Mar 31 2020 05:45:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08997 * 109.47243 * 2 1 4 4 C 1.50699 * 109.46732 * 119.99756 * 2 1 3 5 5 O 1.21283 * 120.00180 * 95.00904 * 4 2 1 6 6 N 1.34774 * 120.00079 * 275.00644 * 4 2 1 7 7 C 1.46506 * 120.00019 * 6.36250 * 6 4 2 8 8 C 1.50700 * 109.47188 * 92.39409 * 7 6 4 9 9 H 1.08005 * 120.00058 * 0.02562 * 8 7 6 10 10 C 1.37878 * 120.00495 * 180.02562 * 8 7 6 11 11 N 1.31520 * 119.99455 * 0.02562 * 10 8 7 12 12 Si 1.86796 * 120.00338 * 180.02562 * 10 8 7 13 13 H 1.48498 * 109.47270 * 359.97438 * 12 10 8 14 14 H 1.48500 * 109.47225 * 120.00093 * 12 10 8 15 15 H 1.48497 * 109.47018 * 239.99919 * 12 10 8 16 16 C 1.46499 * 120.00637 * 186.36027 * 6 4 2 17 17 C 1.53002 * 109.46848 * 86.99420 * 16 6 4 18 18 C 1.52996 * 109.47112 * 54.69674 * 17 16 6 19 19 C 1.52999 * 109.47117 * 174.69613 * 17 16 6 20 20 C 1.53001 * 109.47294 * 294.69755 * 17 16 6 21 21 C 1.52999 * 109.47385 * 239.99560 * 2 1 3 22 22 C 1.53776 * 113.61511 * 80.86362 * 21 2 1 23 23 C 1.54049 * 86.98665 * 140.01875 * 22 21 2 24 24 C 1.53777 * 87.07834 * 334.57164 * 23 22 21 25 25 H 1.08997 * 109.47392 * 175.12486 * 1 2 3 26 26 H 1.08998 * 109.47626 * 295.12915 * 1 2 3 27 27 H 1.09010 * 109.46837 * 55.12851 * 1 2 3 28 28 H 1.08999 * 109.47546 * 212.39879 * 7 6 4 29 29 H 1.08995 * 109.46974 * 332.39667 * 7 6 4 30 30 H 0.96997 * 119.99886 * 180.02562 * 11 10 8 31 31 H 1.08994 * 109.47738 * 206.99408 * 16 6 4 32 32 H 1.09006 * 109.46944 * 326.99911 * 16 6 4 33 33 H 1.08999 * 109.47463 * 60.00013 * 18 17 16 34 34 H 1.09000 * 109.47413 * 179.97438 * 18 17 16 35 35 H 1.08998 * 109.47296 * 299.99655 * 18 17 16 36 36 H 1.09004 * 109.46940 * 60.00288 * 19 17 16 37 37 H 1.09005 * 109.47420 * 179.97438 * 19 17 16 38 38 H 1.09002 * 109.47670 * 300.00029 * 19 17 16 39 39 H 1.09003 * 109.47242 * 67.93959 * 20 17 16 40 40 H 1.08997 * 109.47458 * 187.94245 * 20 17 16 41 41 H 1.09005 * 109.47142 * 307.94276 * 20 17 16 42 42 H 1.09005 * 112.84813 * 309.66765 * 21 2 1 43 43 H 1.08997 * 113.61913 * 254.61534 * 22 21 2 44 44 H 1.09003 * 113.61597 * 25.51960 * 22 21 2 45 45 H 1.08994 * 113.62459 * 220.02394 * 23 22 21 46 46 H 1.09005 * 113.68694 * 89.12906 * 23 22 21 47 47 H 1.09006 * 113.61760 * 270.87807 * 24 23 22 48 48 H 1.09005 * 113.61753 * 139.97508 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7104 1.2305 5 8 2.3208 -1.8871 1.1761 6 7 2.1608 -0.0380 2.3915 7 6 1.6828 1.3430 2.4950 8 6 0.2634 1.3467 3.0013 9 1 -0.2329 0.4136 3.2241 10 6 -0.4018 2.5411 3.1801 11 7 0.2024 3.6772 2.9083 12 14 -2.1610 2.5456 3.8084 13 1 -2.6087 1.1482 4.0365 14 1 -2.2290 3.3023 5.0843 15 1 -3.0439 3.1899 2.8032 16 6 2.7784 -0.6880 3.5500 17 6 4.2956 -0.4986 3.4923 18 6 4.6193 0.9923 3.3773 19 6 4.9286 -1.0611 4.7666 20 6 4.8559 -1.2375 2.2754 21 6 2.0400 -0.7213 -1.2492 22 6 2.0345 0.1556 -2.5123 23 6 3.3856 -0.4924 -2.8696 24 6 3.5733 -0.7445 -1.3643 25 1 -0.3634 -1.0239 -0.0873 26 1 -0.3634 0.4364 0.9303 27 1 -0.3633 0.5876 -0.8432 28 1 2.3170 1.8961 3.1877 29 1 1.7194 1.8147 1.5131 30 1 -0.2654 4.5175 3.0345 31 1 2.3912 -0.2422 4.4661 32 1 2.5444 -1.7526 3.5369 33 1 4.2202 1.5188 4.2442 34 1 5.7001 1.1274 3.3366 35 1 4.1684 1.3931 2.4694 36 1 4.6980 -2.1233 4.8485 37 1 6.0095 -0.9265 4.7253 38 1 4.5295 -0.5347 5.6336 39 1 4.5151 -0.7468 1.3637 40 1 5.9452 -1.2222 2.3108 41 1 4.5065 -2.2700 2.2846 42 1 1.5766 -1.6974 -1.3932 43 1 1.2334 -0.0886 -3.2100 44 1 2.1040 1.2231 -2.3031 45 1 4.1085 0.2075 -3.2885 46 1 3.2915 -1.4059 -3.4569 47 1 4.0629 0.0774 -0.8416 48 1 4.0138 -1.7150 -1.1356 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000457547665.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:45:24 Heat of formation + Delta-G solvation = -45.390329 kcal Electronic energy + Delta-G solvation = -24527.019745 eV Core-core repulsion = 21388.643268 eV Total energy + Delta-G solvation = -3138.376476 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 4.47 seconds Orbital eigenvalues (eV) -39.91705 -38.21925 -36.42206 -34.38996 -32.34973 -31.99989 -27.64319 -26.93242 -26.71640 -26.00937 -25.35327 -24.97373 -22.94253 -21.86304 -19.26598 -18.66409 -17.81123 -16.54023 -16.25786 -15.60232 -15.00862 -14.82560 -14.39560 -14.25985 -13.94411 -13.40826 -13.28820 -12.76534 -12.49629 -12.23482 -12.12691 -12.06472 -11.96408 -11.80000 -11.52558 -11.41973 -11.23973 -11.17930 -11.03972 -10.88399 -10.87412 -10.68220 -10.43667 -10.35431 -10.19706 -10.16585 -10.00121 -9.96025 -9.65600 -9.58199 -8.73529 -8.47800 -7.55669 -6.17467 -4.23002 3.20944 3.30182 3.34013 3.57404 4.03371 4.34448 4.90911 4.95167 5.01440 5.14395 5.15749 5.24208 5.25537 5.39138 5.65110 5.68467 5.80047 5.91686 5.92653 5.95961 5.99922 6.01789 6.07300 6.09886 6.13916 6.16420 6.22896 6.26384 6.33079 6.37929 6.44485 6.48728 6.53415 6.56174 6.61355 6.64414 6.75512 6.81840 6.86737 6.95135 7.10982 7.27148 7.64279 7.79214 8.09711 8.47463 8.83388 9.17729 9.43687 10.88625 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.011862 B = 0.007821 C = 0.005382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2359.967294 B = 3579.357941 C = 5200.877042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.094 4.094 3 H 0.091 0.909 4 C 0.525 3.475 5 O -0.571 6.571 6 N -0.593 5.593 7 C 0.233 3.767 8 C -0.531 4.531 9 H 0.061 0.939 10 C 0.066 3.934 11 N -0.890 5.890 12 Si 0.891 3.109 13 H -0.272 1.272 14 H -0.283 1.283 15 H -0.282 1.282 16 C 0.131 3.869 17 C -0.085 4.085 18 C -0.137 4.137 19 C -0.136 4.136 20 C -0.129 4.129 21 C -0.085 4.085 22 C -0.136 4.136 23 C -0.143 4.143 24 C -0.131 4.131 25 H 0.045 0.955 26 H 0.096 0.904 27 H 0.052 0.948 28 H 0.039 0.961 29 H 0.039 0.961 30 H 0.264 0.736 31 H 0.074 0.926 32 H 0.068 0.932 33 H 0.055 0.945 34 H 0.042 0.958 35 H 0.062 0.938 36 H 0.052 0.948 37 H 0.051 0.949 38 H 0.054 0.946 39 H 0.054 0.946 40 H 0.038 0.962 41 H 0.058 0.942 42 H 0.090 0.910 43 H 0.063 0.937 44 H 0.081 0.919 45 H 0.061 0.939 46 H 0.075 0.925 47 H 0.074 0.926 48 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.771 -5.131 -4.653 9.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.115 4.115 3 H 0.109 0.891 4 C 0.314 3.686 5 O -0.452 6.452 6 N -0.323 5.323 7 C 0.113 3.887 8 C -0.570 4.570 9 H 0.079 0.921 10 C -0.137 4.137 11 N -0.528 5.528 12 Si 0.719 3.281 13 H -0.197 1.197 14 H -0.209 1.209 15 H -0.208 1.208 16 C 0.007 3.993 17 C -0.086 4.086 18 C -0.194 4.194 19 C -0.193 4.193 20 C -0.186 4.186 21 C -0.104 4.104 22 C -0.174 4.174 23 C -0.181 4.181 24 C -0.169 4.169 25 H 0.064 0.936 26 H 0.114 0.886 27 H 0.071 0.929 28 H 0.057 0.943 29 H 0.057 0.943 30 H 0.073 0.927 31 H 0.093 0.907 32 H 0.087 0.913 33 H 0.074 0.926 34 H 0.061 0.939 35 H 0.081 0.919 36 H 0.071 0.929 37 H 0.070 0.930 38 H 0.073 0.927 39 H 0.073 0.927 40 H 0.057 0.943 41 H 0.077 0.923 42 H 0.108 0.892 43 H 0.081 0.919 44 H 0.099 0.901 45 H 0.080 0.920 46 H 0.093 0.907 47 H 0.093 0.907 48 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 6.885 -5.515 -4.659 9.976 hybrid contribution -1.068 0.341 0.456 1.210 sum 5.818 -5.174 -4.203 8.848 Atomic orbital electron populations 1.21847 0.92826 1.01245 1.04669 1.21226 0.98080 1.00016 0.92172 0.89128 1.20374 0.76902 0.86656 0.84687 1.90553 1.52726 1.16176 1.85725 1.48142 1.57781 1.16399 1.09957 1.19549 0.94513 0.76244 0.98356 1.21522 0.98164 0.92773 1.44548 0.92085 1.24917 0.98195 0.95383 0.95232 1.69929 1.37249 0.97505 1.48123 0.86544 0.84661 0.78281 0.78655 1.19663 1.20914 1.20835 1.21309 0.90429 0.98152 0.89411 1.20972 0.96193 0.95982 0.95491 1.21903 0.99887 0.94976 1.02650 1.21787 0.99967 1.00571 0.97020 1.21829 0.98584 1.00666 0.97510 1.22352 0.95892 0.98945 0.93222 1.23019 0.97150 0.99643 0.97571 1.22853 0.97766 1.00469 0.96983 1.22858 0.96758 1.01812 0.95442 0.93608 0.88584 0.92852 0.94324 0.94345 0.92654 0.90746 0.91342 0.92617 0.93870 0.91907 0.92929 0.93023 0.92717 0.92745 0.94280 0.92286 0.89217 0.91859 0.90081 0.91973 0.90667 0.90689 0.91531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.74 9.10 37.16 0.34 -2.40 16 2 C -0.09 -1.71 1.68 -91.77 -0.15 -1.86 16 3 H 0.09 1.71 6.09 -51.93 -0.32 1.40 16 4 C 0.53 10.60 4.82 -10.99 -0.05 10.54 16 5 O -0.57 -12.31 13.81 5.56 0.08 -12.24 16 6 N -0.59 -12.10 1.92 -175.06 -0.34 -12.44 16 7 C 0.23 5.32 3.76 -5.19 -0.02 5.30 16 8 C -0.53 -13.37 7.17 -34.44 -0.25 -13.62 16 9 H 0.06 1.59 7.81 -52.48 -0.41 1.18 16 10 C 0.07 1.69 5.46 -17.82 -0.10 1.60 16 11 N -0.89 -23.91 13.29 55.43 0.74 -23.17 16 12 Si 0.89 20.28 29.54 -169.99 -5.02 15.26 16 13 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 14 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 15 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 16 C 0.13 2.43 4.62 -4.04 -0.02 2.41 16 17 C -0.09 -1.35 0.85 -154.51 -0.13 -1.49 16 18 C -0.14 -2.21 7.15 37.16 0.27 -1.94 16 19 C -0.14 -1.81 8.47 37.16 0.31 -1.50 16 20 C -0.13 -2.07 7.09 37.16 0.26 -1.81 16 21 C -0.09 -1.34 2.56 -89.81 -0.23 -1.57 16 22 C -0.14 -1.82 7.63 -25.78 -0.20 -2.01 16 23 C -0.14 -1.77 8.09 -25.78 -0.21 -1.98 16 24 C -0.13 -1.94 6.87 -25.92 -0.18 -2.11 16 25 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 26 H 0.10 2.05 5.49 -51.93 -0.29 1.76 16 27 H 0.05 0.88 8.14 -51.92 -0.42 0.46 16 28 H 0.04 0.93 6.30 -51.93 -0.33 0.60 16 29 H 0.04 0.92 5.73 -51.93 -0.30 0.62 16 30 H 0.26 6.78 8.31 -40.82 -0.34 6.44 16 31 H 0.07 1.40 8.05 -51.93 -0.42 0.99 16 32 H 0.07 1.31 7.42 -51.93 -0.39 0.93 16 33 H 0.05 0.92 7.88 -51.93 -0.41 0.51 16 34 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.06 1.12 6.29 -51.93 -0.33 0.79 16 36 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 38 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 39 H 0.05 0.95 6.54 -51.93 -0.34 0.61 16 40 H 0.04 0.55 8.13 -51.93 -0.42 0.13 16 41 H 0.06 1.01 7.58 -51.93 -0.39 0.62 16 42 H 0.09 1.47 8.14 -51.93 -0.42 1.05 16 43 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 44 H 0.08 1.09 7.99 -51.93 -0.41 0.68 16 45 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 46 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 47 H 0.07 1.14 8.09 -51.93 -0.42 0.72 16 48 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 LS Contribution 362.45 15.07 5.46 5.46 Total: -1.00 -26.56 362.45 -8.39 -34.95 By element: Atomic # 1 Polarization: 13.57 SS G_CDS: -8.95 Total: 4.62 kcal Atomic # 6 Polarization: -12.09 SS G_CDS: -0.35 Total: -12.44 kcal Atomic # 7 Polarization: -36.01 SS G_CDS: 0.40 Total: -35.61 kcal Atomic # 8 Polarization: -12.31 SS G_CDS: 0.08 Total: -12.24 kcal Atomic # 14 Polarization: 20.28 SS G_CDS: -5.02 Total: 15.26 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -26.56 -8.39 -34.95 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457547665.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.441 kcal (2) G-P(sol) polarization free energy of solvation -26.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.949 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.47 seconds