Wall clock time and date at job start Tue Mar 31 2020 05:25:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.46966 * 2 1 4 4 C 1.52997 * 109.47075 * 240.00042 * 2 1 3 5 5 C 1.52994 * 109.47191 * 300.00054 * 4 2 1 6 6 C 1.53001 * 109.47177 * 299.99866 * 5 4 2 7 7 C 1.52997 * 109.46950 * 59.99987 * 6 5 4 8 8 H 1.09000 * 109.47396 * 60.00120 * 7 6 5 9 9 C 1.53001 * 109.46950 * 179.97438 * 7 6 5 10 10 C 1.50693 * 109.47333 * 294.99824 * 9 7 6 11 11 O 1.21286 * 119.99943 * 0.02562 * 10 9 7 12 12 N 1.34773 * 120.00149 * 179.97438 * 10 9 7 13 13 C 1.46502 * 120.00044 * 180.02562 * 12 10 9 14 14 C 1.53009 * 109.47022 * 180.02562 * 13 12 10 15 15 C 1.52999 * 109.46974 * 60.00056 * 14 13 12 16 16 C 1.53002 * 109.47013 * 300.00276 * 14 13 12 17 17 C 1.50705 * 109.46871 * 180.02562 * 14 13 12 18 18 H 1.08001 * 119.99858 * 355.29868 * 17 14 13 19 19 C 1.37880 * 119.99648 * 175.57181 * 17 14 13 20 20 N 1.31509 * 119.99693 * 199.75520 * 19 17 14 21 21 Si 1.86797 * 119.99979 * 19.74895 * 19 17 14 22 22 H 1.48508 * 109.46891 * 84.62674 * 21 19 17 23 23 H 1.48504 * 109.47180 * 204.62381 * 21 19 17 24 24 H 1.48497 * 109.47427 * 324.62659 * 21 19 17 25 25 C 1.52995 * 109.47307 * 119.99947 * 2 1 3 26 26 H 1.09002 * 109.46966 * 180.02562 * 1 2 3 27 27 H 1.09006 * 109.47077 * 299.99968 * 1 2 3 28 28 H 1.09001 * 109.47133 * 59.99845 * 1 2 3 29 29 H 1.09001 * 109.47227 * 179.97438 * 4 2 1 30 30 H 1.09001 * 109.47048 * 60.00060 * 4 2 1 31 31 H 1.09006 * 109.47198 * 180.02562 * 5 4 2 32 32 H 1.09004 * 109.47112 * 60.00170 * 5 4 2 33 33 H 1.09000 * 109.46973 * 299.99848 * 6 5 4 34 34 H 1.09002 * 109.47368 * 180.02562 * 6 5 4 35 35 H 1.09008 * 109.47162 * 175.00099 * 9 7 6 36 36 H 1.08997 * 109.47434 * 55.00453 * 9 7 6 37 37 H 0.97005 * 120.00141 * 0.02562 * 12 10 9 38 38 H 1.09001 * 109.46862 * 60.00510 * 13 12 10 39 39 H 1.09003 * 109.47254 * 299.99955 * 13 12 10 40 40 H 1.09001 * 109.46906 * 179.97438 * 15 14 13 41 41 H 1.08991 * 109.47097 * 300.00062 * 15 14 13 42 42 H 1.09003 * 109.47327 * 60.00170 * 15 14 13 43 43 H 1.09003 * 109.46947 * 308.85797 * 16 14 13 44 44 H 1.08992 * 109.46969 * 68.86157 * 16 14 13 45 45 H 1.09002 * 109.46875 * 188.86695 * 16 14 13 46 46 H 0.97003 * 119.99880 * 180.02562 * 20 19 17 47 47 H 1.09003 * 109.47492 * 300.00425 * 25 2 1 48 48 H 1.08995 * 109.47602 * 180.02562 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 1.5300 -2.1637 -1.2493 6 6 2.0400 -2.8850 0.0000 7 6 1.5300 -2.1637 1.2492 8 1 0.4400 -2.1637 1.2492 9 6 2.0395 -2.8854 2.4984 10 6 1.4381 -4.2657 2.5616 11 8 0.6772 -4.6360 1.6927 12 7 1.7465 -5.0890 3.5830 13 6 1.1623 -6.4311 3.6441 14 6 1.6717 -7.1528 4.8935 15 6 1.2664 -6.3629 6.1395 16 6 3.1966 -7.2625 4.8328 17 6 1.0712 -8.5336 4.9560 18 1 0.3362 -8.8364 4.2248 19 6 1.4559 -9.4083 5.9500 20 7 1.2554 -10.6997 5.8032 21 14 2.2620 -8.7589 7.5049 22 1 1.2126 -8.3376 8.4676 23 1 3.0931 -9.8277 8.1151 24 1 3.1210 -7.5953 7.1684 25 6 2.0400 -0.7212 1.2492 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 3.1300 -0.7208 -1.2495 30 1 1.6766 -0.2074 -2.1392 31 1 1.8937 -2.6777 -2.1391 32 1 0.4399 -2.1637 -1.2493 33 1 3.1300 -2.8850 -0.0001 34 1 1.6771 -3.9128 -0.0003 35 1 1.7512 -2.3225 3.3862 36 1 3.1258 -2.9640 2.4550 37 1 2.3554 -4.7930 4.2778 38 1 1.4507 -6.9937 2.7562 39 1 0.0759 -6.3529 3.6878 40 1 1.6290 -6.8772 7.0296 41 1 1.7011 -5.3644 6.0940 42 1 0.1801 -6.2846 6.1828 43 1 3.4926 -7.6844 3.8723 44 1 3.6369 -6.2719 4.9459 45 1 3.5465 -7.9097 5.6371 46 1 1.5257 -11.3150 6.5026 47 1 1.6767 -0.2074 2.1392 48 1 3.1300 -0.7208 1.2495 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000457988516.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:45 Heat of formation + Delta-G solvation = -64.134059 kcal Electronic energy + Delta-G solvation = -23087.155413 eV Core-core repulsion = 19947.966147 eV Total energy + Delta-G solvation = -3139.189266 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.02385 -38.66087 -36.67665 -33.27731 -33.11556 -31.63061 -31.40196 -27.81405 -26.86687 -26.35455 -25.51670 -24.67993 -22.35165 -21.60848 -19.88984 -19.08927 -18.74120 -16.76369 -16.06851 -15.81159 -15.42816 -15.19297 -14.85142 -14.55909 -14.30528 -13.93768 -13.64316 -13.16753 -12.91397 -12.84394 -12.73174 -12.56069 -12.25001 -12.11995 -12.00560 -11.86743 -11.60424 -11.49296 -11.21871 -11.11023 -10.91825 -10.45009 -10.34778 -10.32781 -10.22054 -10.11964 -10.05502 -10.00628 -9.35030 -9.13560 -8.70140 -8.47362 -8.36887 -6.18208 -4.11370 3.03339 3.23046 3.31084 3.37194 3.68956 4.35233 4.55914 4.58552 4.62197 4.98159 5.02427 5.11734 5.12851 5.24938 5.29061 5.40042 5.49854 5.51789 5.53879 5.61398 5.65766 5.76811 5.81609 5.83886 5.88675 5.93508 6.06458 6.07705 6.13783 6.17934 6.18929 6.27076 6.36887 6.50246 6.51679 6.53071 6.54658 6.64634 6.71109 6.82674 6.99834 7.24700 7.43418 7.73419 7.99321 8.43858 8.67305 8.90286 9.48385 10.94908 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.040691 B = 0.003257 C = 0.003175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 687.941989 B = 8593.744567 C = 8815.795387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.090 4.090 3 H 0.065 0.935 4 C -0.114 4.114 5 C -0.119 4.119 6 C -0.120 4.120 7 C -0.070 4.070 8 H 0.081 0.919 9 C -0.140 4.140 10 C 0.504 3.496 11 O -0.545 6.545 12 N -0.725 5.725 13 C 0.142 3.858 14 C 0.030 3.970 15 C -0.147 4.147 16 C -0.141 4.141 17 C -0.518 4.518 18 H 0.075 0.925 19 C 0.079 3.921 20 N -0.885 5.885 21 Si 0.875 3.125 22 H -0.285 1.285 23 H -0.303 1.303 24 H -0.246 1.246 25 C -0.110 4.110 26 H 0.065 0.935 27 H 0.051 0.949 28 H 0.050 0.950 29 H 0.059 0.941 30 H 0.057 0.943 31 H 0.057 0.943 32 H 0.064 0.936 33 H 0.052 0.948 34 H 0.085 0.915 35 H 0.088 0.912 36 H 0.088 0.912 37 H 0.395 0.605 38 H 0.062 0.938 39 H 0.059 0.941 40 H 0.043 0.957 41 H 0.027 0.973 42 H 0.051 0.949 43 H 0.047 0.953 44 H 0.022 0.978 45 H 0.055 0.945 46 H 0.264 0.736 47 H 0.060 0.940 48 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.840 21.301 -8.128 23.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.108 4.108 3 H 0.083 0.917 4 C -0.152 4.152 5 C -0.156 4.156 6 C -0.157 4.157 7 C -0.089 4.089 8 H 0.099 0.901 9 C -0.180 4.180 10 C 0.290 3.710 11 O -0.424 6.424 12 N -0.376 5.376 13 C 0.020 3.980 14 C 0.029 3.971 15 C -0.204 4.204 16 C -0.198 4.198 17 C -0.556 4.556 18 H 0.093 0.907 19 C -0.124 4.124 20 N -0.521 5.521 21 Si 0.706 3.294 22 H -0.212 1.212 23 H -0.231 1.231 24 H -0.172 1.172 25 C -0.148 4.148 26 H 0.084 0.916 27 H 0.070 0.930 28 H 0.069 0.931 29 H 0.077 0.923 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.083 0.917 33 H 0.071 0.929 34 H 0.103 0.897 35 H 0.106 0.894 36 H 0.106 0.894 37 H 0.230 0.770 38 H 0.080 0.920 39 H 0.078 0.922 40 H 0.061 0.939 41 H 0.046 0.954 42 H 0.070 0.930 43 H 0.066 0.934 44 H 0.041 0.959 45 H 0.073 0.927 46 H 0.074 0.926 47 H 0.079 0.921 48 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 3.299 20.811 -8.681 22.789 hybrid contribution 0.714 0.292 1.440 1.633 sum 4.013 21.103 -7.242 22.669 Atomic orbital electron populations 1.21963 0.95364 1.02534 1.01151 1.21061 0.95992 0.98666 0.95101 0.91674 1.21578 1.00302 0.96134 0.97170 1.21540 1.01123 0.95002 0.97973 1.21705 0.99663 1.01019 0.93330 1.20918 1.01367 0.93291 0.93325 0.90084 1.21772 1.01875 0.93998 1.00361 1.20607 0.81748 0.86908 0.81718 1.90644 1.36449 1.76802 1.38487 1.46366 1.48612 1.16637 1.25964 1.21476 0.97319 0.79854 0.99388 1.18693 0.92784 0.95486 0.90176 1.22357 1.00937 0.97484 0.99626 1.22285 0.97590 0.98358 1.01568 1.20690 1.25679 0.94531 1.14670 0.90655 1.24942 0.94735 0.94274 0.98470 1.70018 1.47107 1.01724 1.33271 0.87491 0.79805 0.78078 0.83984 1.21208 1.23128 1.17194 1.21636 1.00428 0.95289 0.97424 0.91582 0.92980 0.93104 0.92272 0.92473 0.92451 0.91697 0.92940 0.89695 0.89369 0.89366 0.77035 0.92000 0.92224 0.93901 0.95370 0.93004 0.93403 0.95938 0.92655 0.92568 0.92119 0.92063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.31 8.50 37.16 0.32 -0.99 16 2 C -0.09 -0.75 3.19 -90.62 -0.29 -1.04 16 3 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 4 C -0.11 -0.98 5.45 -26.74 -0.15 -1.13 16 5 C -0.12 -1.22 5.65 -26.73 -0.15 -1.37 16 6 C -0.12 -1.40 4.94 -26.73 -0.13 -1.54 16 7 C -0.07 -0.77 1.56 -90.62 -0.14 -0.91 16 8 H 0.08 1.02 6.24 -51.93 -0.32 0.69 16 9 C -0.14 -1.55 5.18 -27.89 -0.14 -1.70 16 10 C 0.50 7.86 7.55 -10.99 -0.08 7.77 16 11 O -0.55 -10.42 13.96 5.55 0.08 -10.34 16 12 N -0.72 -11.65 5.00 -60.29 -0.30 -11.95 16 13 C 0.14 2.85 4.49 -4.04 -0.02 2.83 16 14 C 0.03 0.65 0.50 -155.65 -0.08 0.57 16 15 C -0.15 -2.95 7.62 37.16 0.28 -2.67 16 16 C -0.14 -2.86 7.51 37.16 0.28 -2.59 16 17 C -0.52 -13.94 8.60 -34.44 -0.30 -14.23 16 18 H 0.08 2.23 7.99 -52.49 -0.42 1.81 16 19 C 0.08 2.19 5.23 -17.82 -0.09 2.10 16 20 N -0.89 -26.40 13.96 55.43 0.77 -25.63 16 21 Si 0.88 20.78 22.96 -169.99 -3.90 16.88 16 22 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 23 H -0.30 -7.36 7.11 56.52 0.40 -6.96 16 24 H -0.25 -5.30 4.61 56.52 0.26 -5.04 16 25 C -0.11 -0.96 4.73 -26.73 -0.13 -1.09 16 26 H 0.07 0.65 4.81 -51.93 -0.25 0.40 16 27 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 29 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.06 0.70 6.43 -51.93 -0.33 0.36 16 33 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.08 1.26 5.95 -51.93 -0.31 0.95 16 35 H 0.09 0.83 8.14 -51.92 -0.42 0.41 16 36 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.40 5.50 6.25 -40.82 -0.26 5.25 16 38 H 0.06 1.34 8.14 -51.93 -0.42 0.91 16 39 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 40 H 0.04 0.91 2.60 -51.93 -0.13 0.77 16 41 H 0.03 0.46 6.86 -51.93 -0.36 0.11 16 42 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 43 H 0.05 0.97 8.12 -51.93 -0.42 0.55 16 44 H 0.02 0.37 7.11 -51.93 -0.37 0.01 16 45 H 0.05 1.20 4.04 -51.93 -0.21 0.99 16 46 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 47 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 48 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 LS Contribution 344.15 15.07 5.19 5.19 Total: -1.00 -29.87 344.15 -7.57 -37.44 By element: Atomic # 1 Polarization: 12.98 SS G_CDS: -8.58 Total: 4.40 kcal Atomic # 6 Polarization: -15.15 SS G_CDS: -0.82 Total: -15.97 kcal Atomic # 7 Polarization: -38.06 SS G_CDS: 0.47 Total: -37.59 kcal Atomic # 8 Polarization: -10.42 SS G_CDS: 0.08 Total: -10.34 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -3.90 Total: 16.88 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -29.87 -7.57 -37.44 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457988516.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.696 kcal (2) G-P(sol) polarization free energy of solvation -29.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.438 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds