Wall clock time and date at job start Tue Mar 31 2020 05:25:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08997 * 109.46851 * 2 1 4 4 C 1.53004 * 109.47123 * 239.99994 * 2 1 3 5 5 C 1.53001 * 109.46986 * 180.02562 * 4 2 1 6 6 C 1.52996 * 109.47298 * 59.99829 * 5 4 2 7 7 C 1.53004 * 109.47242 * 300.00014 * 6 5 4 8 8 H 1.09003 * 109.46857 * 300.00395 * 7 6 5 9 9 C 1.52996 * 109.47242 * 180.02562 * 7 6 5 10 10 C 1.50700 * 109.46969 * 64.99991 * 9 7 6 11 11 O 1.21283 * 120.00275 * 359.97438 * 10 9 7 12 12 N 1.34777 * 120.00075 * 179.97438 * 10 9 7 13 13 C 1.46499 * 120.00065 * 180.02562 * 12 10 9 14 14 C 1.53004 * 109.47198 * 180.02562 * 13 12 10 15 15 C 1.52998 * 109.47200 * 59.99818 * 14 13 12 16 16 C 1.53005 * 109.46471 * 299.99791 * 14 13 12 17 17 C 1.50701 * 109.47211 * 180.02562 * 14 13 12 18 18 H 1.08002 * 119.99761 * 359.97438 * 17 14 13 19 19 C 1.37871 * 119.99694 * 180.27574 * 17 14 13 20 20 N 1.31514 * 120.00482 * 359.71466 * 19 17 14 21 21 Si 1.86801 * 119.99746 * 179.72062 * 19 17 14 22 22 H 1.48494 * 109.47230 * 359.97438 * 21 19 17 23 23 H 1.48505 * 109.47301 * 119.99669 * 21 19 17 24 24 H 1.48498 * 109.47430 * 239.99516 * 21 19 17 25 25 C 1.52996 * 109.46976 * 119.99936 * 2 1 3 26 26 H 1.08991 * 109.46850 * 299.99758 * 1 2 3 27 27 H 1.08997 * 109.46635 * 60.00286 * 1 2 3 28 28 H 1.08997 * 109.46851 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.46857 * 299.99710 * 4 2 1 30 30 H 1.08998 * 109.46803 * 59.99833 * 4 2 1 31 31 H 1.08997 * 109.46900 * 180.02562 * 5 4 2 32 32 H 1.09011 * 109.46647 * 299.99712 * 5 4 2 33 33 H 1.09000 * 109.47036 * 180.02562 * 6 5 4 34 34 H 1.08997 * 109.47278 * 60.00354 * 6 5 4 35 35 H 1.09002 * 109.47033 * 305.00654 * 9 7 6 36 36 H 1.08998 * 109.47408 * 185.00064 * 9 7 6 37 37 H 0.97000 * 120.00140 * 0.02562 * 12 10 9 38 38 H 1.09000 * 109.47602 * 60.00059 * 13 12 10 39 39 H 1.09007 * 109.47337 * 299.99774 * 13 12 10 40 40 H 1.09004 * 109.46783 * 180.02562 * 15 14 13 41 41 H 1.09005 * 109.46870 * 300.00189 * 15 14 13 42 42 H 1.08998 * 109.47156 * 60.00128 * 15 14 13 43 43 H 1.08995 * 109.47438 * 299.99599 * 16 14 13 44 44 H 1.08996 * 109.47069 * 60.00459 * 16 14 13 45 45 H 1.09004 * 109.46658 * 179.97438 * 16 14 13 46 46 H 0.96995 * 120.00207 * 179.97438 * 20 19 17 47 47 H 1.08997 * 109.47278 * 60.00325 * 25 2 1 48 48 H 1.08991 * 109.47581 * 299.99858 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0401 -0.7213 -1.2493 5 6 3.5701 -0.7218 -1.2489 6 6 4.0796 -1.4434 0.0003 7 6 3.5696 -0.7221 1.2496 8 1 3.9332 0.3055 1.2497 9 6 4.0796 -1.4433 2.4988 10 6 5.5815 -1.3369 2.5622 11 8 6.1846 -0.7431 1.6936 12 7 6.2545 -1.9015 3.5843 13 6 7.7145 -1.7976 3.6463 14 6 8.2246 -2.5189 4.8955 15 6 7.8204 -3.9932 4.8339 16 6 7.6140 -1.8742 6.1416 17 6 9.7264 -2.4115 4.9596 18 1 10.2634 -1.8821 4.1864 19 6 10.4153 -2.9943 6.0019 20 7 9.7615 -3.6393 6.9433 21 14 12.2775 -2.8679 6.0772 22 1 12.7690 -2.0967 4.9072 23 1 12.6765 -2.1763 7.3294 24 1 12.8676 -4.2304 6.0547 25 6 2.0400 -0.7212 1.2492 26 1 -0.3633 0.5138 0.8899 27 1 -0.3632 0.5138 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 1.6768 -1.7490 -1.2492 30 1 1.6767 -0.2074 -2.1392 31 1 3.9334 -1.2352 -2.1391 32 1 3.9337 0.3059 -1.2487 33 1 5.1696 -1.4433 0.0007 34 1 3.7160 -2.4709 0.0001 35 1 3.7913 -2.4936 2.4551 36 1 3.6450 -0.9838 3.3865 37 1 5.7722 -2.3767 4.2790 38 1 8.0026 -0.7472 3.6898 39 1 8.1495 -2.2572 2.7588 40 1 8.1835 -4.5070 5.7242 41 1 6.7341 -4.0705 4.7878 42 1 8.2553 -4.4525 3.9462 43 1 7.9020 -0.8239 6.1854 44 1 6.5278 -1.9516 6.0954 45 1 7.9771 -2.3884 7.0315 46 1 10.2462 -4.0497 7.6764 47 1 1.6767 -1.7489 1.2492 48 1 1.6768 -0.2075 2.1392 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000457988517.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:47 Heat of formation + Delta-G solvation = -87.772366 kcal Electronic energy + Delta-G solvation = -22807.871904 eV Core-core repulsion = 19667.657604 eV Total energy + Delta-G solvation = -3140.214300 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.81202 -38.39493 -36.33602 -33.35669 -33.22627 -31.85135 -30.82732 -27.66430 -26.41261 -25.72551 -25.47230 -24.53962 -22.06837 -21.13924 -19.82694 -19.66012 -18.73395 -16.79212 -15.75983 -15.38824 -15.27083 -14.97940 -14.72387 -14.42242 -14.23307 -13.72808 -13.62867 -13.00874 -12.87300 -12.79537 -12.49541 -12.21024 -12.11665 -11.90721 -11.64573 -11.36885 -11.31466 -11.19199 -11.01712 -10.87622 -10.83261 -10.66045 -10.44592 -10.38634 -10.24529 -10.18714 -10.00404 -9.62956 -9.43131 -9.10758 -8.76834 -8.43509 -8.26699 -6.02283 -4.12228 3.13567 3.26905 3.35531 3.40201 3.81171 4.40156 4.56651 4.59841 4.69659 5.00264 5.03836 5.20213 5.24537 5.26455 5.38043 5.43355 5.47299 5.52203 5.60174 5.67494 5.71235 5.77032 5.79155 5.91001 5.95443 6.15492 6.17871 6.21356 6.27689 6.29557 6.34824 6.51733 6.52861 6.56229 6.80820 6.82739 6.94761 7.02339 7.08988 7.36460 7.55893 7.69638 8.01146 8.09651 8.18707 8.39149 8.78299 8.89387 9.53716 10.99166 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.042223 B = 0.002990 C = 0.002891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 662.992513 B = 9360.907879 C = 9684.399889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.092 4.092 3 H 0.069 0.931 4 C -0.113 4.113 5 C -0.117 4.117 6 C -0.120 4.120 7 C -0.068 4.068 8 H 0.076 0.924 9 C -0.139 4.139 10 C 0.503 3.497 11 O -0.551 6.551 12 N -0.719 5.719 13 C 0.132 3.868 14 C 0.055 3.945 15 C -0.131 4.131 16 C -0.130 4.130 17 C -0.505 4.505 18 H 0.058 0.942 19 C 0.065 3.935 20 N -0.886 5.886 21 Si 0.892 3.108 22 H -0.273 1.273 23 H -0.284 1.284 24 H -0.284 1.284 25 C -0.109 4.109 26 H 0.053 0.947 27 H 0.052 0.948 28 H 0.053 0.947 29 H 0.059 0.941 30 H 0.056 0.944 31 H 0.057 0.943 32 H 0.060 0.940 33 H 0.085 0.915 34 H 0.052 0.948 35 H 0.088 0.912 36 H 0.088 0.912 37 H 0.397 0.603 38 H 0.053 0.947 39 H 0.053 0.947 40 H 0.085 0.915 41 H 0.006 0.994 42 H 0.026 0.974 43 H 0.026 0.974 44 H 0.006 0.994 45 H 0.085 0.915 46 H 0.259 0.741 47 H 0.061 0.939 48 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.133 3.496 -9.817 20.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.111 4.111 3 H 0.087 0.913 4 C -0.151 4.151 5 C -0.155 4.155 6 C -0.158 4.158 7 C -0.087 4.087 8 H 0.095 0.905 9 C -0.179 4.179 10 C 0.289 3.711 11 O -0.430 6.430 12 N -0.370 5.370 13 C 0.009 3.991 14 C 0.055 3.945 15 C -0.189 4.189 16 C -0.188 4.188 17 C -0.543 4.543 18 H 0.076 0.924 19 C -0.136 4.136 20 N -0.525 5.525 21 Si 0.721 3.279 22 H -0.198 1.198 23 H -0.211 1.211 24 H -0.211 1.211 25 C -0.147 4.147 26 H 0.072 0.928 27 H 0.071 0.929 28 H 0.072 0.928 29 H 0.078 0.922 30 H 0.075 0.925 31 H 0.076 0.924 32 H 0.079 0.921 33 H 0.103 0.897 34 H 0.071 0.929 35 H 0.106 0.894 36 H 0.106 0.894 37 H 0.232 0.768 38 H 0.071 0.929 39 H 0.071 0.929 40 H 0.104 0.896 41 H 0.025 0.975 42 H 0.045 0.955 43 H 0.045 0.955 44 H 0.025 0.975 45 H 0.104 0.896 46 H 0.069 0.931 47 H 0.080 0.920 48 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -16.636 3.813 -10.258 19.913 hybrid contribution 0.794 -0.246 0.523 0.982 sum -15.842 3.567 -9.735 18.933 Atomic orbital electron populations 1.21833 0.95537 1.01632 1.01417 1.21120 0.95011 0.99763 0.95158 0.91299 1.21609 0.96026 1.00348 0.97112 1.21501 0.94958 1.00983 0.98035 1.21711 1.02707 0.98039 0.93298 1.20860 0.94082 1.00345 0.93434 0.90525 1.21756 0.93160 1.02814 1.00208 1.20609 0.89759 0.78949 0.81828 1.90623 1.70510 1.43098 1.38730 1.46364 1.09568 1.55368 1.25700 1.21677 0.76793 1.00299 1.00282 1.18356 0.95368 0.91654 0.89144 1.21829 0.95355 0.99277 1.02390 1.21827 0.95063 0.99252 1.02681 1.21038 0.90444 1.34276 1.08579 0.92422 1.24882 0.98301 0.94917 0.95461 1.69812 1.34859 1.35731 1.12109 0.86524 0.85687 0.77751 0.77978 1.19762 1.21057 1.21065 1.21656 0.95100 1.00587 0.97342 0.92805 0.92937 0.92815 0.92222 0.92503 0.92377 0.92080 0.89679 0.92892 0.89374 0.89353 0.76827 0.92887 0.92892 0.89600 0.97494 0.95488 0.95474 0.97496 0.89644 0.93076 0.92015 0.92097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.09 9.19 37.16 0.34 -0.75 16 2 C -0.09 -0.81 2.72 -90.62 -0.25 -1.06 16 3 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 4 C -0.11 -1.02 5.20 -26.73 -0.14 -1.16 16 5 C -0.12 -1.25 5.92 -26.73 -0.16 -1.41 16 6 C -0.12 -1.48 4.95 -26.73 -0.13 -1.62 16 7 C -0.07 -0.80 1.84 -90.64 -0.17 -0.97 16 8 H 0.08 1.03 7.95 -51.93 -0.41 0.61 16 9 C -0.14 -1.68 5.18 -27.88 -0.14 -1.83 16 10 C 0.50 8.42 7.55 -10.98 -0.08 8.34 16 11 O -0.55 -11.06 13.96 5.55 0.08 -10.98 16 12 N -0.72 -12.67 4.96 -60.29 -0.30 -12.97 16 13 C 0.13 2.82 4.50 -4.04 -0.02 2.80 16 14 C 0.06 1.29 0.50 -155.66 -0.08 1.21 16 15 C -0.13 -2.95 8.08 37.16 0.30 -2.65 16 16 C -0.13 -2.94 8.08 37.16 0.30 -2.64 16 17 C -0.50 -13.28 8.01 -34.44 -0.28 -13.56 16 18 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 19 C 0.07 1.73 5.15 -17.82 -0.09 1.63 16 20 N -0.89 -23.66 9.35 55.43 0.52 -23.15 16 21 Si 0.89 20.79 29.54 -169.99 -5.02 15.76 16 22 H -0.27 -6.37 7.11 56.52 0.40 -5.96 16 23 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 24 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 25 C -0.11 -1.02 4.48 -26.76 -0.12 -1.14 16 26 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 30 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 31 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.06 0.68 8.14 -51.92 -0.42 0.26 16 33 H 0.08 1.31 5.95 -51.93 -0.31 1.00 16 34 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 36 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 37 H 0.40 6.31 6.16 -40.82 -0.25 6.06 16 38 H 0.05 1.20 8.14 -51.93 -0.42 0.77 16 39 H 0.05 1.19 8.14 -51.93 -0.42 0.77 16 40 H 0.09 2.14 6.06 -51.93 -0.31 1.83 16 41 H 0.01 0.12 6.86 -51.93 -0.36 -0.24 16 42 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 43 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 44 H 0.01 0.12 6.86 -51.93 -0.36 -0.24 16 45 H 0.08 2.13 6.08 -51.93 -0.32 1.81 16 46 H 0.26 6.66 8.31 -40.82 -0.34 6.32 16 47 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 48 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 LS Contribution 360.88 15.07 5.44 5.44 Total: -1.00 -27.73 360.88 -9.04 -36.78 By element: Atomic # 1 Polarization: 12.96 SS G_CDS: -9.05 Total: 3.91 kcal Atomic # 6 Polarization: -14.08 SS G_CDS: -0.71 Total: -14.79 kcal Atomic # 7 Polarization: -36.34 SS G_CDS: 0.22 Total: -36.12 kcal Atomic # 8 Polarization: -11.06 SS G_CDS: 0.08 Total: -10.98 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.76 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -27.73 -9.04 -36.78 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457988517.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.997 kcal (2) G-P(sol) polarization free energy of solvation -27.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.775 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds