Wall clock time and date at job start Tue Mar 31 2020 05:25:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09002 * 109.47344 * 2 1 4 4 C 1.53001 * 109.47131 * 120.00185 * 2 1 3 5 5 C 1.52999 * 109.47139 * 60.00125 * 4 2 1 6 6 C 1.52998 * 109.47794 * 59.99519 * 5 4 2 7 7 C 1.53000 * 109.46912 * 300.00745 * 6 5 4 8 8 H 1.09001 * 109.47196 * 299.98854 * 7 6 5 9 9 C 1.53008 * 109.46909 * 179.97438 * 7 6 5 10 10 C 1.50704 * 109.47078 * 64.99646 * 9 7 6 11 11 O 1.21275 * 119.99876 * 0.02562 * 10 9 7 12 12 N 1.34774 * 119.99556 * 179.97438 * 10 9 7 13 13 C 1.46502 * 119.99512 * 180.02562 * 12 10 9 14 14 C 1.52995 * 109.47032 * 180.02562 * 13 12 10 15 15 C 1.53008 * 109.47164 * 299.99756 * 14 13 12 16 16 C 1.53006 * 109.47468 * 59.99840 * 14 13 12 17 17 C 1.50700 * 109.47367 * 180.02562 * 14 13 12 18 18 H 1.08000 * 120.00165 * 1.34443 * 17 14 13 19 19 C 1.37882 * 120.00351 * 181.34716 * 17 14 13 20 20 N 1.31512 * 120.00223 * 193.97717 * 19 17 14 21 21 Si 1.86801 * 119.99921 * 13.97060 * 19 17 14 22 22 H 1.48497 * 109.46803 * 84.55176 * 21 19 17 23 23 H 1.48496 * 109.47360 * 204.55232 * 21 19 17 24 24 H 1.48499 * 109.47148 * 324.55282 * 21 19 17 25 25 C 1.52995 * 109.47735 * 59.99695 * 7 6 5 26 26 H 1.08994 * 109.47337 * 180.02562 * 1 2 3 27 27 H 1.09006 * 109.46877 * 300.00033 * 1 2 3 28 28 H 1.09000 * 109.47367 * 59.99257 * 1 2 3 29 29 H 1.08994 * 109.47492 * 299.99763 * 4 2 1 30 30 H 1.09010 * 109.46888 * 179.97438 * 4 2 1 31 31 H 1.09010 * 109.46692 * 299.99460 * 5 4 2 32 32 H 1.08996 * 109.47045 * 180.02562 * 5 4 2 33 33 H 1.09003 * 109.46530 * 59.99717 * 6 5 4 34 34 H 1.08988 * 109.47622 * 180.02562 * 6 5 4 35 35 H 1.09000 * 109.46976 * 184.99444 * 9 7 6 36 36 H 1.09000 * 109.46945 * 304.99736 * 9 7 6 37 37 H 0.96999 * 120.00745 * 0.02562 * 12 10 9 38 38 H 1.09000 * 109.47010 * 299.99893 * 13 12 10 39 39 H 1.09000 * 109.47246 * 60.00390 * 13 12 10 40 40 H 1.09002 * 109.46615 * 69.36853 * 15 14 13 41 41 H 1.08996 * 109.47398 * 189.36775 * 15 14 13 42 42 H 1.08998 * 109.47119 * 309.37012 * 15 14 13 43 43 H 1.08995 * 109.46887 * 59.99954 * 16 14 13 44 44 H 1.09001 * 109.46881 * 180.02562 * 16 14 13 45 45 H 1.08997 * 109.46589 * 299.99905 * 16 14 13 46 46 H 0.96999 * 120.00215 * 179.97438 * 20 19 17 47 47 H 1.09001 * 109.47465 * 59.99324 * 25 7 6 48 48 H 1.08995 * 109.47786 * 179.97438 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.5300 -2.1638 1.2492 6 6 2.0398 -2.8851 -0.0001 7 6 1.5298 -2.1637 -1.2493 8 1 0.4398 -2.1637 -1.2493 9 6 2.0402 -2.8847 -2.4986 10 6 1.4397 -4.2654 -2.5623 11 8 0.6782 -4.6361 -1.6943 12 7 1.7482 -5.0878 -3.5845 13 6 1.1640 -6.4299 -3.6468 14 6 1.6744 -7.1508 -4.8959 15 6 1.2702 -6.3603 -6.1421 16 6 3.1993 -7.2608 -4.8342 17 6 1.0730 -8.5311 -4.9604 18 1 0.3777 -8.8533 -4.1994 19 6 1.4104 -9.3828 -5.9909 20 7 0.6968 -10.4656 -6.2095 21 14 2.8811 -8.9985 -7.0767 22 1 4.1189 -9.5041 -6.4306 23 1 2.7074 -9.6564 -8.3966 24 1 2.9862 -7.5293 -7.2660 25 6 2.0399 -0.7213 -1.2493 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 1.6767 -0.2075 2.1392 30 1 3.1301 -0.7217 1.2490 31 1 0.4399 -2.1637 1.2493 32 1 1.8929 -2.6775 2.1393 33 1 3.1299 -2.8850 -0.0001 34 1 1.6762 -3.9125 -0.0003 35 1 1.7518 -2.3217 -3.3863 36 1 3.1266 -2.9626 -2.4548 37 1 2.3570 -4.7913 -4.2790 38 1 1.4524 -6.9932 -2.7593 39 1 0.0777 -6.3516 -3.6905 40 1 1.8341 -5.4283 -6.1797 41 1 1.4848 -6.9510 -7.0326 42 1 0.2038 -6.1385 -6.1015 43 1 3.4873 -7.8239 -3.9465 44 1 3.5629 -7.7740 -5.7244 45 1 3.6339 -6.2622 -4.7879 46 1 0.9339 -11.0646 -6.9347 47 1 3.1299 -0.7213 -1.2493 48 1 1.6770 -0.2075 -2.1395 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000457988519.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:52 Heat of formation + Delta-G solvation = -63.174873 kcal Electronic energy + Delta-G solvation = -23092.064089 eV Core-core repulsion = 19952.916417 eV Total energy + Delta-G solvation = -3139.147672 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.03099 -38.66991 -36.70275 -33.28609 -33.12067 -31.63089 -31.40244 -27.82440 -26.87028 -26.40159 -25.53344 -24.67818 -22.35744 -21.61311 -19.89767 -19.10925 -18.74513 -16.76802 -16.08311 -15.81507 -15.46967 -15.17959 -14.89920 -14.56522 -14.32170 -13.94423 -13.62644 -13.19632 -12.99626 -12.81880 -12.69670 -12.56097 -12.25442 -12.12492 -12.04056 -11.87430 -11.62310 -11.49926 -11.22030 -11.11351 -10.92147 -10.44313 -10.35228 -10.31797 -10.18414 -10.12200 -10.07360 -10.02726 -9.32473 -9.09416 -8.69406 -8.51257 -8.42624 -6.15656 -4.12912 3.02692 3.22946 3.29911 3.37629 3.68204 4.34523 4.55520 4.58146 4.61823 4.97693 5.01966 5.11679 5.15147 5.24398 5.28660 5.39591 5.49349 5.51617 5.53485 5.60675 5.65406 5.76233 5.79154 5.83540 5.88132 5.93097 6.04284 6.06025 6.13327 6.17539 6.18513 6.26547 6.34942 6.47428 6.50968 6.51872 6.53128 6.62805 6.68851 6.81815 6.98532 7.21951 7.42319 7.71710 7.98428 8.44230 8.66510 8.89949 9.48267 10.97521 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.040596 B = 0.003249 C = 0.003197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 689.556239 B = 8617.049529 C = 8756.583703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.090 4.090 3 H 0.065 0.935 4 C -0.114 4.114 5 C -0.119 4.119 6 C -0.120 4.120 7 C -0.070 4.070 8 H 0.081 0.919 9 C -0.140 4.140 10 C 0.504 3.496 11 O -0.545 6.545 12 N -0.725 5.725 13 C 0.142 3.858 14 C 0.028 3.972 15 C -0.141 4.141 16 C -0.147 4.147 17 C -0.514 4.514 18 H 0.076 0.924 19 C 0.075 3.925 20 N -0.891 5.891 21 Si 0.886 3.114 22 H -0.286 1.286 23 H -0.305 1.305 24 H -0.249 1.249 25 C -0.110 4.110 26 H 0.065 0.935 27 H 0.050 0.950 28 H 0.051 0.949 29 H 0.057 0.943 30 H 0.058 0.942 31 H 0.064 0.936 32 H 0.057 0.943 33 H 0.052 0.948 34 H 0.084 0.916 35 H 0.088 0.912 36 H 0.088 0.912 37 H 0.395 0.605 38 H 0.060 0.940 39 H 0.061 0.939 40 H 0.021 0.979 41 H 0.056 0.944 42 H 0.046 0.954 43 H 0.053 0.947 44 H 0.041 0.959 45 H 0.029 0.971 46 H 0.265 0.735 47 H 0.060 0.940 48 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.952 20.930 8.963 23.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.108 4.108 3 H 0.083 0.917 4 C -0.152 4.152 5 C -0.156 4.156 6 C -0.157 4.157 7 C -0.089 4.089 8 H 0.099 0.901 9 C -0.180 4.180 10 C 0.290 3.710 11 O -0.424 6.424 12 N -0.376 5.376 13 C 0.020 3.980 14 C 0.027 3.973 15 C -0.199 4.199 16 C -0.204 4.204 17 C -0.552 4.552 18 H 0.094 0.906 19 C -0.127 4.127 20 N -0.528 5.528 21 Si 0.718 3.282 22 H -0.214 1.214 23 H -0.234 1.234 24 H -0.175 1.175 25 C -0.148 4.148 26 H 0.084 0.916 27 H 0.069 0.931 28 H 0.070 0.930 29 H 0.075 0.925 30 H 0.077 0.923 31 H 0.083 0.917 32 H 0.075 0.925 33 H 0.071 0.929 34 H 0.103 0.897 35 H 0.107 0.893 36 H 0.106 0.894 37 H 0.230 0.770 38 H 0.079 0.921 39 H 0.080 0.920 40 H 0.040 0.960 41 H 0.074 0.926 42 H 0.066 0.934 43 H 0.072 0.928 44 H 0.059 0.941 45 H 0.048 0.952 46 H 0.075 0.925 47 H 0.079 0.921 48 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 4.356 20.465 9.475 22.969 hybrid contribution 1.205 0.105 -1.085 1.625 sum 5.562 20.570 8.390 22.901 Atomic orbital electron populations 1.21961 0.95354 1.02537 1.01163 1.21063 0.96000 0.98669 0.95092 0.91668 1.21580 1.00294 0.96130 0.97181 1.21540 1.01137 0.95011 0.97959 1.21703 0.99649 1.01016 0.93342 1.20921 1.01381 0.93297 0.93312 0.90065 1.21776 1.01854 0.93996 1.00382 1.20607 0.81742 0.86903 0.81715 1.90641 1.36370 1.76765 1.38579 1.46364 1.48638 1.16670 1.25930 1.21471 0.97479 0.79856 0.99230 1.18717 0.91893 0.95995 0.90691 1.22291 0.99976 0.97596 1.00023 1.22354 0.98527 0.98634 1.00889 1.20734 1.27302 0.95717 1.11400 0.90574 1.24979 0.96249 0.95017 0.96499 1.69950 1.37767 1.14064 1.31028 0.87290 0.83325 0.78600 0.78955 1.21364 1.23403 1.17519 1.21638 1.00419 0.95291 0.97435 0.91583 0.93108 0.92960 0.92462 0.92279 0.91696 0.92458 0.92948 0.89705 0.89338 0.89387 0.77033 0.92139 0.92029 0.95958 0.92563 0.93444 0.92832 0.94070 0.95183 0.92550 0.92075 0.92101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.31 8.50 37.16 0.32 -0.99 16 2 C -0.09 -0.75 3.20 -90.62 -0.29 -1.04 16 3 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 4 C -0.11 -0.98 5.45 -26.73 -0.15 -1.12 16 5 C -0.12 -1.21 5.65 -26.73 -0.15 -1.36 16 6 C -0.12 -1.40 4.95 -26.73 -0.13 -1.53 16 7 C -0.07 -0.77 1.56 -90.62 -0.14 -0.91 16 8 H 0.08 1.02 6.24 -51.93 -0.32 0.69 16 9 C -0.14 -1.55 5.17 -27.88 -0.14 -1.69 16 10 C 0.50 7.83 7.55 -10.98 -0.08 7.75 16 11 O -0.55 -10.39 13.97 5.56 0.08 -10.31 16 12 N -0.73 -11.61 5.00 -60.30 -0.30 -11.91 16 13 C 0.14 2.84 4.49 -4.04 -0.02 2.82 16 14 C 0.03 0.61 0.50 -155.66 -0.08 0.53 16 15 C -0.14 -2.86 7.53 37.16 0.28 -2.58 16 16 C -0.15 -2.96 7.52 37.16 0.28 -2.68 16 17 C -0.51 -13.82 8.62 -34.44 -0.30 -14.12 16 18 H 0.08 2.25 7.99 -52.49 -0.42 1.84 16 19 C 0.08 2.09 5.32 -17.82 -0.09 2.00 16 20 N -0.89 -26.70 13.96 55.43 0.77 -25.92 16 21 Si 0.89 21.05 22.79 -169.99 -3.87 17.18 16 22 H -0.29 -6.78 7.10 56.52 0.40 -6.37 16 23 H -0.31 -7.43 7.11 56.52 0.40 -7.03 16 24 H -0.25 -5.37 4.65 56.52 0.26 -5.10 16 25 C -0.11 -0.96 4.73 -26.73 -0.13 -1.09 16 26 H 0.07 0.65 4.81 -51.93 -0.25 0.40 16 27 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 28 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.06 0.49 8.14 -51.92 -0.42 0.07 16 31 H 0.06 0.69 6.43 -51.92 -0.33 0.36 16 32 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.08 1.25 5.95 -51.94 -0.31 0.94 16 35 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.40 5.48 6.26 -40.82 -0.26 5.22 16 38 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 39 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 40 H 0.02 0.37 7.13 -51.93 -0.37 0.00 16 41 H 0.06 1.21 4.30 -51.93 -0.22 0.99 16 42 H 0.05 0.95 8.12 -51.93 -0.42 0.53 16 43 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 44 H 0.04 0.88 2.25 -51.93 -0.12 0.76 16 45 H 0.03 0.49 6.86 -51.93 -0.36 0.14 16 46 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 47 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 48 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 LS Contribution 343.95 15.07 5.18 5.18 Total: -1.00 -29.97 343.95 -7.54 -37.51 By element: Atomic # 1 Polarization: 12.87 SS G_CDS: -8.57 Total: 4.29 kcal Atomic # 6 Polarization: -15.19 SS G_CDS: -0.83 Total: -16.02 kcal Atomic # 7 Polarization: -38.31 SS G_CDS: 0.47 Total: -37.84 kcal Atomic # 8 Polarization: -10.39 SS G_CDS: 0.08 Total: -10.31 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -3.87 Total: 17.18 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -29.97 -7.54 -37.51 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457988519.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.668 kcal (2) G-P(sol) polarization free energy of solvation -29.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.507 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds