Wall clock time and date at job start Tue Mar 31 2020 05:47:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 H 1.09002 * 109.46841 * 2 1 4 4 C 1.52997 * 109.46996 * 240.00117 * 2 1 3 5 5 C 1.52997 * 109.47225 * 173.39409 * 4 2 1 6 6 C 1.54257 * 110.03446 * 291.58300 * 5 4 2 7 7 C 1.54885 * 104.20030 * 217.10252 * 6 5 4 8 8 C 1.54901 * 102.74617 * 37.94360 * 7 6 5 9 9 C 1.53877 * 110.02954 * 174.41555 * 5 4 2 10 10 C 1.50698 * 109.47114 * 120.00220 * 2 1 3 11 11 O 1.21281 * 119.99729 * 119.99941 * 10 2 1 12 12 N 1.34777 * 120.00144 * 299.99794 * 10 2 1 13 13 C 1.46498 * 119.99829 * 179.97438 * 12 10 2 14 14 C 1.53005 * 109.46655 * 180.02562 * 13 12 10 15 15 C 1.53001 * 109.47200 * 299.99670 * 14 13 12 16 16 C 1.52994 * 109.47429 * 60.00250 * 14 13 12 17 17 C 1.50709 * 109.46832 * 180.02562 * 14 13 12 18 18 H 1.07996 * 119.99999 * 359.97438 * 17 14 13 19 19 C 1.37875 * 119.99956 * 180.02562 * 17 14 13 20 20 N 1.31523 * 120.00046 * 359.97438 * 19 17 14 21 21 Si 1.86799 * 119.99970 * 179.97438 * 19 17 14 22 22 H 1.48498 * 109.46978 * 90.00325 * 21 19 17 23 23 H 1.48503 * 109.46905 * 209.99854 * 21 19 17 24 24 H 1.48496 * 109.47174 * 329.99862 * 21 19 17 25 25 H 1.09008 * 109.46607 * 304.37053 * 1 2 3 26 26 H 1.08992 * 109.46901 * 64.37111 * 1 2 3 27 27 H 1.08997 * 109.46886 * 184.37743 * 1 2 3 28 28 H 1.09001 * 109.47312 * 293.40181 * 4 2 1 29 29 H 1.09010 * 109.47155 * 53.39216 * 4 2 1 30 30 H 1.08998 * 110.01272 * 53.02631 * 5 4 2 31 31 H 1.09004 * 110.48906 * 335.78299 * 6 5 4 32 32 H 1.09000 * 110.48927 * 98.42436 * 6 5 4 33 33 H 1.08992 * 110.75824 * 279.62974 * 7 6 5 34 34 H 1.09001 * 110.91943 * 156.32428 * 7 6 5 35 35 H 1.08992 * 110.48282 * 203.37718 * 8 7 6 36 36 H 1.08996 * 110.48491 * 80.73298 * 8 7 6 37 37 H 1.09006 * 110.03083 * 238.56555 * 9 5 4 38 38 H 1.08993 * 110.03543 * 359.95385 * 9 5 4 39 39 H 0.96998 * 119.99862 * 0.02562 * 12 10 2 40 40 H 1.09001 * 109.47640 * 299.99760 * 13 12 10 41 41 H 1.08997 * 109.46957 * 60.00380 * 13 12 10 42 42 H 1.09004 * 109.46922 * 60.00375 * 15 14 13 43 43 H 1.09005 * 109.47402 * 180.02562 * 15 14 13 44 44 H 1.08997 * 109.47554 * 300.00554 * 15 14 13 45 45 H 1.09001 * 109.47301 * 60.00208 * 16 14 13 46 46 H 1.09005 * 109.47010 * 179.97438 * 16 14 13 47 47 H 1.09004 * 109.46901 * 299.99753 * 16 14 13 48 48 H 0.96998 * 119.99724 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 3.5610 -0.5791 -1.3350 6 6 3.9391 0.8875 -1.6276 7 6 5.1579 0.7834 -2.5776 8 6 4.7918 -0.4273 -3.4718 9 6 4.1031 -1.4152 -2.5076 10 6 2.0324 -0.7104 1.2304 11 8 2.7297 -1.6965 1.1190 12 7 1.7069 -0.2500 2.4546 13 6 2.1948 -0.9411 3.6506 14 6 1.6844 -0.2201 4.8999 15 6 2.1945 1.2224 4.9005 16 6 0.1544 -0.2200 4.8995 17 6 2.1868 -0.9306 6.1304 18 1 2.8076 -1.8087 6.0313 19 6 1.8530 -0.4601 7.3827 20 7 1.0965 0.6090 7.5034 21 14 2.4751 -1.3412 8.9078 22 1 3.7829 -0.7659 9.3129 23 1 1.4963 -1.1710 10.0116 24 1 2.6406 -2.7868 8.6115 25 1 -0.3633 0.5802 0.8483 26 1 -0.3633 0.4445 -0.9265 27 1 -0.3633 -1.0246 0.0784 28 1 1.7763 -1.7773 -1.1922 29 1 1.5833 -0.2801 -2.1354 30 1 4.0193 -0.9045 -0.4011 31 1 3.1146 1.4031 -2.1200 32 1 4.2159 1.4011 -0.7069 33 1 6.0704 0.5862 -2.0151 34 1 5.2629 1.6880 -3.1765 35 1 5.6910 -0.8732 -3.8969 36 1 4.1050 -0.1241 -4.2620 37 1 4.8253 -2.1456 -2.1429 38 1 3.2828 -1.9227 -3.0150 39 1 1.1489 0.5384 2.5436 40 1 1.8310 -1.9686 3.6505 41 1 3.2847 -0.9415 3.6508 42 1 1.8315 1.7365 4.0106 43 1 1.8313 1.7359 5.7908 44 1 3.2845 1.2223 4.9009 45 1 -0.2090 -1.2476 4.8991 46 1 -0.2091 0.2933 5.7897 47 1 -0.2086 0.2942 4.0095 48 1 0.8620 0.9402 8.3844 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000457998324.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:22 Heat of formation + Delta-G solvation = -82.442787 kcal Electronic energy + Delta-G solvation = -23155.562024 eV Core-core repulsion = 20015.578833 eV Total energy + Delta-G solvation = -3139.983192 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.83381 -38.10407 -36.35369 -34.18927 -33.22125 -30.89190 -29.64080 -28.69751 -25.75871 -25.72223 -25.22102 -24.94934 -22.51189 -20.77501 -19.64272 -19.41230 -18.72061 -16.91441 -15.89115 -15.79504 -15.36698 -15.03036 -14.80088 -14.36333 -14.05274 -13.38813 -13.25311 -13.04910 -12.97591 -12.82799 -12.23486 -12.18931 -12.11171 -11.73489 -11.43077 -11.31505 -11.18502 -11.12959 -11.06145 -10.86377 -10.72685 -10.69043 -10.44604 -10.43667 -10.35901 -10.21988 -10.17772 -9.62545 -9.42341 -9.08203 -8.77317 -8.42690 -8.25822 -6.01983 -4.11998 3.14320 3.28253 3.35221 3.39194 3.83295 4.40535 4.53687 4.63351 4.71499 4.90985 5.05555 5.09225 5.24741 5.39278 5.46759 5.51398 5.56051 5.60403 5.63034 5.71105 5.77909 5.81190 5.87739 5.92684 6.01449 6.06601 6.18766 6.22106 6.26769 6.31241 6.35099 6.41520 6.52146 6.63718 6.81108 6.82869 6.95056 7.02525 7.09419 7.36677 7.56028 7.69678 8.01366 8.10020 8.19394 8.39366 8.78857 8.89400 9.53850 10.99393 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.028331 B = 0.003493 C = 0.003359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 988.079432 B = 8013.963474 C = 8334.113726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.115 4.115 3 H 0.093 0.907 4 C -0.088 4.088 5 C -0.098 4.098 6 C -0.122 4.122 7 C -0.125 4.125 8 C -0.124 4.124 9 C -0.118 4.118 10 C 0.508 3.492 11 O -0.550 6.550 12 N -0.717 5.717 13 C 0.132 3.868 14 C 0.056 3.944 15 C -0.130 4.130 16 C -0.130 4.130 17 C -0.506 4.506 18 H 0.057 0.943 19 C 0.066 3.934 20 N -0.886 5.886 21 Si 0.893 3.107 22 H -0.281 1.281 23 H -0.287 1.287 24 H -0.274 1.274 25 H 0.061 0.939 26 H 0.063 0.937 27 H 0.059 0.941 28 H 0.069 0.931 29 H 0.063 0.937 30 H 0.091 0.909 31 H 0.063 0.937 32 H 0.061 0.939 33 H 0.064 0.936 34 H 0.061 0.939 35 H 0.059 0.941 36 H 0.061 0.939 37 H 0.061 0.939 38 H 0.061 0.939 39 H 0.396 0.604 40 H 0.053 0.947 41 H 0.053 0.947 42 H 0.006 0.994 43 H 0.085 0.915 44 H 0.026 0.974 45 H 0.026 0.974 46 H 0.085 0.915 47 H 0.006 0.994 48 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.844 2.468 -18.197 18.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.136 4.136 3 H 0.111 0.889 4 C -0.126 4.126 5 C -0.116 4.116 6 C -0.160 4.160 7 C -0.163 4.163 8 C -0.162 4.162 9 C -0.155 4.155 10 C 0.293 3.707 11 O -0.429 6.429 12 N -0.368 5.368 13 C 0.009 3.991 14 C 0.055 3.945 15 C -0.188 4.188 16 C -0.188 4.188 17 C -0.544 4.544 18 H 0.075 0.925 19 C -0.135 4.135 20 N -0.525 5.525 21 Si 0.721 3.279 22 H -0.207 1.207 23 H -0.213 1.213 24 H -0.199 1.199 25 H 0.080 0.920 26 H 0.082 0.918 27 H 0.078 0.922 28 H 0.087 0.913 29 H 0.081 0.919 30 H 0.109 0.891 31 H 0.082 0.918 32 H 0.080 0.920 33 H 0.083 0.917 34 H 0.080 0.920 35 H 0.078 0.922 36 H 0.080 0.920 37 H 0.079 0.921 38 H 0.079 0.921 39 H 0.232 0.768 40 H 0.071 0.929 41 H 0.071 0.929 42 H 0.025 0.975 43 H 0.104 0.896 44 H 0.045 0.955 45 H 0.045 0.955 46 H 0.104 0.896 47 H 0.025 0.975 48 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 1.257 1.860 -18.093 18.232 hybrid contribution 0.044 -0.039 1.000 1.002 sum 1.301 1.821 -17.094 17.239 Atomic orbital electron populations 1.21769 0.93322 1.02676 1.02353 1.21390 0.97099 1.00954 0.94186 0.88936 1.21502 0.95113 1.00810 0.95133 1.21912 0.95556 0.94352 0.99813 1.22491 0.97559 0.96859 0.99055 1.22485 0.98389 0.97803 0.97622 1.22360 0.99828 0.96223 0.97777 1.22166 0.99710 0.97789 0.95864 1.20540 0.80513 0.84801 0.84823 1.90629 1.38581 1.26761 1.86884 1.46343 1.52574 1.31736 1.06116 1.21678 0.98014 0.95732 0.83635 1.18348 0.92762 0.92728 0.90634 1.21825 0.98540 0.98388 1.00032 1.21821 0.97795 0.99127 1.00035 1.21002 1.31386 1.12097 0.89948 0.92481 1.24881 0.94849 0.94948 0.98843 1.69808 1.36677 1.22830 1.23191 0.86577 0.78553 0.80178 0.82605 1.20712 1.21269 1.19903 0.92005 0.91828 0.92164 0.91271 0.91878 0.89099 0.91791 0.91974 0.91688 0.92027 0.92179 0.92001 0.92053 0.92063 0.76847 0.92904 0.92899 0.97534 0.89629 0.95505 0.95495 0.89625 0.97521 0.93028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.54 9.05 37.16 0.34 -1.20 16 2 C -0.11 -1.43 2.66 -91.77 -0.24 -1.67 16 3 H 0.09 1.04 7.35 -51.93 -0.38 0.66 16 4 C -0.09 -1.04 3.45 -26.73 -0.09 -1.13 16 5 C -0.10 -1.21 2.71 -89.51 -0.24 -1.45 16 6 C -0.12 -1.30 5.46 -25.08 -0.14 -1.44 16 7 C -0.13 -1.21 6.91 -24.73 -0.17 -1.38 16 8 C -0.12 -1.16 6.83 -25.06 -0.17 -1.33 16 9 C -0.12 -1.29 6.46 -25.61 -0.17 -1.45 16 10 C 0.51 8.59 6.82 -10.99 -0.07 8.51 16 11 O -0.55 -11.13 14.12 5.56 0.08 -11.05 16 12 N -0.72 -12.70 4.86 -60.29 -0.29 -12.99 16 13 C 0.13 2.82 4.50 -4.04 -0.02 2.80 16 14 C 0.06 1.30 0.50 -155.66 -0.08 1.22 16 15 C -0.13 -2.94 8.08 37.16 0.30 -2.64 16 16 C -0.13 -2.93 8.08 37.15 0.30 -2.63 16 17 C -0.51 -13.31 8.01 -34.44 -0.28 -13.59 16 18 H 0.06 1.52 7.74 -52.49 -0.41 1.12 16 19 C 0.07 1.74 5.15 -17.82 -0.09 1.65 16 20 N -0.89 -23.65 9.35 55.43 0.52 -23.13 16 21 Si 0.89 20.79 29.54 -169.99 -5.02 15.77 16 22 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 23 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 24 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 25 H 0.06 0.65 7.69 -51.92 -0.40 0.25 16 26 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.07 0.92 7.90 -51.93 -0.41 0.51 16 29 H 0.06 0.62 7.99 -51.92 -0.41 0.21 16 30 H 0.09 1.42 6.06 -51.93 -0.31 1.11 16 31 H 0.06 0.61 7.75 -51.93 -0.40 0.21 16 32 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 36 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 37 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 38 H 0.06 0.63 7.67 -51.93 -0.40 0.23 16 39 H 0.40 6.40 5.66 -40.82 -0.23 6.17 16 40 H 0.05 1.19 8.14 -51.93 -0.42 0.77 16 41 H 0.05 1.19 8.14 -51.93 -0.42 0.77 16 42 H 0.01 0.11 6.86 -51.93 -0.36 -0.24 16 43 H 0.09 2.13 6.07 -51.93 -0.32 1.82 16 44 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 45 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 46 H 0.09 2.13 6.07 -51.93 -0.32 1.82 16 47 H 0.01 0.12 6.86 -51.93 -0.36 -0.24 16 48 H 0.26 6.69 8.31 -40.82 -0.34 6.35 16 LS Contribution 361.55 15.07 5.45 5.45 Total: -1.00 -27.72 361.55 -9.00 -36.73 By element: Atomic # 1 Polarization: 13.88 SS G_CDS: -8.91 Total: 4.97 kcal Atomic # 6 Polarization: -14.91 SS G_CDS: -0.83 Total: -15.74 kcal Atomic # 7 Polarization: -36.35 SS G_CDS: 0.23 Total: -36.13 kcal Atomic # 8 Polarization: -11.13 SS G_CDS: 0.08 Total: -11.05 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.77 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -27.72 -9.00 -36.73 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457998324.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.715 kcal (2) G-P(sol) polarization free energy of solvation -27.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.728 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds