Wall clock time and date at job start Tue Mar 31 2020 05:47:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 109.47408 * 2 1 4 4 C 1.52999 * 109.47028 * 119.99588 * 2 1 3 5 5 C 1.53000 * 109.47309 * 294.99843 * 4 2 1 6 6 C 1.54263 * 110.03604 * 292.16825 * 5 4 2 7 7 C 1.54891 * 104.19695 * 217.10535 * 6 5 4 8 8 C 1.54884 * 102.74893 * 37.94058 * 7 6 5 9 9 C 1.53877 * 110.03359 * 175.00141 * 5 4 2 10 10 C 1.50698 * 109.47490 * 239.99612 * 2 1 3 11 11 O 1.21283 * 120.00472 * 240.00297 * 10 2 1 12 12 N 1.34777 * 119.99538 * 59.99635 * 10 2 1 13 13 C 1.46499 * 119.99665 * 179.72653 * 12 10 2 14 14 C 1.53004 * 109.47198 * 180.27868 * 13 12 10 15 15 C 1.52998 * 109.46876 * 299.99984 * 14 13 12 16 16 C 1.53005 * 109.46795 * 60.00011 * 14 13 12 17 17 C 1.50700 * 109.47208 * 180.02562 * 14 13 12 18 18 H 1.08002 * 119.99770 * 359.97438 * 17 14 13 19 19 C 1.37876 * 119.99720 * 179.97438 * 17 14 13 20 20 N 1.31514 * 120.00513 * 0.02562 * 19 17 14 21 21 Si 1.86809 * 119.99651 * 179.97438 * 19 17 14 22 22 H 1.48495 * 109.47265 * 0.02562 * 21 19 17 23 23 H 1.48494 * 109.46830 * 120.00397 * 21 19 17 24 24 H 1.48503 * 109.47108 * 240.00004 * 21 19 17 25 25 H 1.08995 * 109.47139 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.47199 * 300.00376 * 1 2 3 27 27 H 1.09001 * 109.46983 * 60.00108 * 1 2 3 28 28 H 1.08998 * 109.47220 * 55.00350 * 4 2 1 29 29 H 1.09007 * 109.46943 * 175.00242 * 4 2 1 30 30 H 1.09005 * 110.01540 * 53.61208 * 5 4 2 31 31 H 1.09003 * 110.48466 * 335.78515 * 6 5 4 32 32 H 1.08997 * 110.48753 * 98.42238 * 6 5 4 33 33 H 1.08998 * 110.75176 * 279.62248 * 7 6 5 34 34 H 1.08995 * 110.75293 * 156.25984 * 7 6 5 35 35 H 1.09002 * 110.48493 * 203.38012 * 8 7 6 36 36 H 1.09000 * 110.48819 * 80.73729 * 8 7 6 37 37 H 1.08997 * 110.03151 * 238.57400 * 9 5 4 38 38 H 1.08999 * 110.03098 * 359.95276 * 9 5 4 39 39 H 0.97001 * 120.00485 * 0.02562 * 12 10 2 40 40 H 1.09009 * 109.47454 * 300.27637 * 13 12 10 41 41 H 1.08998 * 109.47492 * 60.27932 * 13 12 10 42 42 H 1.08996 * 109.47009 * 60.00253 * 15 14 13 43 43 H 1.09004 * 109.46783 * 179.97438 * 15 14 13 44 44 H 1.08998 * 109.47156 * 300.00070 * 15 14 13 45 45 H 1.09000 * 109.47011 * 60.00556 * 16 14 13 46 46 H 1.09004 * 109.46658 * 180.02562 * 16 14 13 47 47 H 1.08996 * 109.47069 * 299.99740 * 16 14 13 48 48 H 0.96999 * 120.00239 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 1.6352 0.0691 2.4953 6 6 2.3978 1.4093 2.5420 7 6 2.6996 1.6224 4.0462 8 6 3.0218 0.1890 4.5366 9 6 2.0320 -0.7068 3.7636 10 6 2.0324 -0.7105 -1.2304 11 8 2.7296 -1.6966 -1.1191 12 7 1.7067 -0.2501 -2.4545 13 6 2.2000 -0.9372 -3.6506 14 6 1.6946 -0.2128 -4.8999 15 6 0.1647 -0.2135 -4.9059 16 6 2.2040 1.2300 -4.8939 17 6 2.2016 -0.9200 -6.1303 18 1 2.8226 -1.7981 -6.0311 19 6 1.8727 -0.4460 -7.3826 20 7 1.1169 0.6235 -7.5033 21 14 2.5017 -1.3223 -8.9078 22 1 3.3257 -2.4896 -8.5035 23 1 1.3501 -1.7878 -9.7215 24 1 3.3289 -0.3861 -9.7107 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.6054 -1.7197 1.2953 29 1 3.1263 -0.7993 1.2056 30 1 0.5603 0.2503 2.4894 31 1 3.3249 1.3407 1.9728 32 1 1.7735 2.2169 2.1600 33 1 1.8262 2.0202 4.5628 34 1 3.5599 2.2784 4.1783 35 1 2.8528 0.1061 5.6103 36 1 4.0497 -0.0768 4.2896 37 1 1.1499 -0.9014 4.3735 38 1 2.5121 -1.6467 3.4913 39 1 1.1493 0.5388 -2.5436 40 1 3.2901 -0.9367 -3.6464 41 1 1.8372 -1.9650 -3.6549 42 1 -0.2024 0.2978 -4.0160 43 1 -0.1954 0.3030 -5.7957 44 1 -0.1982 -1.2413 -4.9101 45 1 3.2940 1.2304 -4.8897 46 1 1.8436 1.7462 -5.7838 47 1 1.8369 1.7412 -4.0040 48 1 0.8852 0.9567 -8.3844 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000457998326.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:25 Heat of formation + Delta-G solvation = -83.249501 kcal Electronic energy + Delta-G solvation = -22851.552957 eV Core-core repulsion = 19711.534784 eV Total energy + Delta-G solvation = -3140.018173 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.75529 -38.38820 -36.37652 -34.29852 -33.21340 -30.88273 -29.46049 -28.79212 -25.90042 -25.72209 -25.56270 -24.94467 -22.51299 -20.88150 -19.77976 -19.22522 -18.74154 -16.85178 -16.17018 -15.77926 -15.15602 -15.11475 -14.98421 -14.55076 -14.08349 -13.51411 -13.35790 -13.16279 -13.01219 -12.83321 -12.43135 -12.18659 -12.05291 -11.54347 -11.41574 -11.29966 -11.27066 -11.18942 -11.14030 -10.86796 -10.82224 -10.68211 -10.61315 -10.56969 -10.38171 -10.34744 -10.19795 -9.62980 -9.46309 -9.12533 -8.76715 -8.43607 -8.27233 -6.02112 -4.12015 3.13555 3.27055 3.35651 3.40382 3.79418 4.39850 4.42008 4.48159 4.60010 4.90529 5.01940 5.04723 5.24703 5.28526 5.31823 5.40015 5.42747 5.48690 5.52156 5.62141 5.68612 5.73700 5.83062 5.86403 5.96417 6.01895 6.06208 6.15920 6.17473 6.28336 6.31506 6.35470 6.43269 6.52108 6.80453 6.82843 6.94988 7.02488 7.08250 7.36462 7.56049 7.69792 8.01267 8.09728 8.18780 8.39304 8.77666 8.89496 9.53887 10.99321 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.040347 B = 0.003038 C = 0.002996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 693.808948 B = 9213.823421 C = 9342.502940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.112 4.112 3 H 0.093 0.907 4 C -0.090 4.090 5 C -0.094 4.094 6 C -0.123 4.123 7 C -0.126 4.126 8 C -0.125 4.125 9 C -0.122 4.122 10 C 0.506 3.494 11 O -0.555 6.555 12 N -0.717 5.717 13 C 0.131 3.869 14 C 0.056 3.944 15 C -0.130 4.130 16 C -0.130 4.130 17 C -0.505 4.505 18 H 0.058 0.942 19 C 0.066 3.934 20 N -0.886 5.886 21 Si 0.893 3.107 22 H -0.273 1.273 23 H -0.284 1.284 24 H -0.284 1.284 25 H 0.059 0.941 26 H 0.065 0.935 27 H 0.060 0.940 28 H 0.067 0.933 29 H 0.070 0.930 30 H 0.074 0.926 31 H 0.068 0.932 32 H 0.064 0.936 33 H 0.064 0.936 34 H 0.063 0.937 35 H 0.060 0.940 36 H 0.064 0.936 37 H 0.060 0.940 38 H 0.066 0.934 39 H 0.397 0.603 40 H 0.053 0.947 41 H 0.053 0.947 42 H 0.006 0.994 43 H 0.085 0.915 44 H 0.026 0.974 45 H 0.026 0.974 46 H 0.085 0.915 47 H 0.006 0.994 48 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.465 3.339 19.726 20.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.134 4.134 3 H 0.111 0.889 4 C -0.128 4.128 5 C -0.113 4.113 6 C -0.160 4.160 7 C -0.163 4.163 8 C -0.163 4.163 9 C -0.159 4.159 10 C 0.292 3.708 11 O -0.434 6.434 12 N -0.367 5.367 13 C 0.009 3.991 14 C 0.055 3.945 15 C -0.188 4.188 16 C -0.188 4.188 17 C -0.543 4.543 18 H 0.076 0.924 19 C -0.135 4.135 20 N -0.525 5.525 21 Si 0.721 3.279 22 H -0.198 1.198 23 H -0.211 1.211 24 H -0.211 1.211 25 H 0.078 0.922 26 H 0.084 0.916 27 H 0.079 0.921 28 H 0.086 0.914 29 H 0.089 0.911 30 H 0.092 0.908 31 H 0.087 0.913 32 H 0.083 0.917 33 H 0.083 0.917 34 H 0.081 0.919 35 H 0.079 0.921 36 H 0.083 0.917 37 H 0.079 0.921 38 H 0.084 0.916 39 H 0.232 0.768 40 H 0.071 0.929 41 H 0.071 0.929 42 H 0.025 0.975 43 H 0.104 0.896 44 H 0.045 0.955 45 H 0.045 0.955 46 H 0.104 0.896 47 H 0.025 0.975 48 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -1.044 2.730 19.622 19.838 hybrid contribution 0.045 -0.046 -1.009 1.011 sum -0.999 2.684 18.613 18.832 Atomic orbital electron populations 1.21814 0.93316 1.02679 1.02374 1.21331 0.97379 1.00885 0.93775 0.88901 1.21500 1.01645 0.98441 0.91208 1.21878 1.00124 0.94892 0.94394 1.22493 1.00380 0.96889 0.96246 1.22495 1.00952 0.96733 0.96148 1.22356 0.99491 0.95164 0.99266 1.22209 0.98924 0.98817 0.95964 1.20595 0.80485 0.84803 0.84936 1.90651 1.38807 1.26842 1.87065 1.46333 1.52468 1.31828 1.06093 1.21691 0.97984 0.95817 0.83629 1.18355 0.92799 0.92712 0.90632 1.21824 0.97757 0.99162 1.00052 1.21827 0.98542 0.98410 1.00044 1.21039 1.31304 1.12078 0.89924 0.92418 1.24883 0.94882 0.94926 0.98854 1.69812 1.36857 1.22741 1.23091 0.86523 0.78664 0.79748 0.83003 1.19762 1.21066 1.21059 0.92160 0.91601 0.92072 0.91446 0.91119 0.90772 0.91342 0.91742 0.91743 0.91856 0.92078 0.91719 0.92098 0.91563 0.76793 0.92887 0.92873 0.97523 0.89614 0.95474 0.95476 0.89607 0.97523 0.93079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.55 8.86 37.16 0.33 -1.22 16 2 C -0.11 -1.40 2.65 -91.78 -0.24 -1.65 16 3 H 0.09 1.04 7.37 -51.93 -0.38 0.66 16 4 C -0.09 -1.07 3.16 -26.73 -0.08 -1.15 16 5 C -0.09 -0.88 2.80 -89.50 -0.25 -1.13 16 6 C -0.12 -1.08 5.46 -25.07 -0.14 -1.22 16 7 C -0.13 -0.99 6.91 -24.74 -0.17 -1.16 16 8 C -0.13 -1.01 6.83 -25.08 -0.17 -1.18 16 9 C -0.12 -1.06 6.46 -25.61 -0.17 -1.23 16 10 C 0.51 8.77 7.15 -10.99 -0.08 8.69 16 11 O -0.55 -11.71 15.92 5.55 0.09 -11.62 16 12 N -0.72 -12.85 4.85 -60.29 -0.29 -13.14 16 13 C 0.13 2.83 4.50 -4.04 -0.02 2.82 16 14 C 0.06 1.30 0.50 -155.66 -0.08 1.22 16 15 C -0.13 -2.94 8.08 37.16 0.30 -2.64 16 16 C -0.13 -2.95 8.08 37.16 0.30 -2.65 16 17 C -0.50 -13.32 8.01 -34.44 -0.28 -13.60 16 18 H 0.06 1.55 7.74 -52.49 -0.41 1.14 16 19 C 0.07 1.73 5.15 -17.82 -0.09 1.64 16 20 N -0.89 -23.67 9.35 55.43 0.52 -23.15 16 21 Si 0.89 20.81 29.54 -169.99 -5.02 15.79 16 22 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 23 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 24 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 25 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 26 H 0.07 0.57 6.45 -51.93 -0.33 0.24 16 27 H 0.06 0.65 7.56 -51.93 -0.39 0.26 16 28 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 29 H 0.07 0.94 7.82 -51.93 -0.41 0.54 16 30 H 0.07 0.65 6.33 -51.93 -0.33 0.32 16 31 H 0.07 0.66 7.76 -51.93 -0.40 0.26 16 32 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 35 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 37 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.07 0.62 7.67 -51.93 -0.40 0.22 16 39 H 0.40 6.44 5.58 -40.82 -0.23 6.21 16 40 H 0.05 1.21 8.14 -51.92 -0.42 0.79 16 41 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 42 H 0.01 0.12 6.86 -51.93 -0.36 -0.24 16 43 H 0.09 2.14 6.07 -51.93 -0.32 1.82 16 44 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 45 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 46 H 0.09 2.14 6.07 -51.93 -0.32 1.83 16 47 H 0.01 0.12 6.86 -51.93 -0.36 -0.24 16 48 H 0.26 6.66 8.31 -40.82 -0.34 6.33 16 LS Contribution 361.73 15.07 5.45 5.45 Total: -1.00 -28.25 361.73 -8.92 -37.17 By element: Atomic # 1 Polarization: 12.78 SS G_CDS: -8.83 Total: 3.95 kcal Atomic # 6 Polarization: -13.61 SS G_CDS: -0.84 Total: -14.45 kcal Atomic # 7 Polarization: -36.52 SS G_CDS: 0.23 Total: -36.29 kcal Atomic # 8 Polarization: -11.71 SS G_CDS: 0.09 Total: -11.62 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -28.25 -8.92 -37.17 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457998326.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.080 kcal (2) G-P(sol) polarization free energy of solvation -28.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.170 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds