Wall clock time and date at job start Tue Mar 31 2020 05:37:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.46866 * 2 1 4 4 C 1.52997 * 109.46974 * 119.99774 * 2 1 3 5 5 C 1.52996 * 109.47165 * 180.02562 * 4 2 1 6 6 H 1.08992 * 109.47534 * 180.02562 * 5 4 2 7 7 C 1.50698 * 109.47188 * 59.99664 * 5 4 2 8 8 O 1.21278 * 120.00133 * 240.00263 * 7 5 4 9 9 N 1.34774 * 119.99897 * 60.00658 * 7 5 4 10 10 C 1.46496 * 120.00233 * 180.02562 * 9 7 5 11 11 C 1.53002 * 109.47313 * 179.97438 * 10 9 7 12 12 C 1.52996 * 109.47343 * 299.99876 * 11 10 9 13 13 C 1.53000 * 109.46911 * 60.00135 * 11 10 9 14 14 C 1.50703 * 109.47292 * 179.97438 * 11 10 9 15 15 H 1.08003 * 119.99742 * 0.02562 * 14 11 10 16 16 C 1.37873 * 119.99873 * 180.02562 * 14 11 10 17 17 N 1.31509 * 120.00433 * 0.02562 * 16 14 11 18 18 Si 1.86806 * 119.99827 * 179.97438 * 16 14 11 19 19 H 1.48500 * 109.46706 * 90.00257 * 18 16 14 20 20 H 1.48499 * 109.47435 * 210.00035 * 18 16 14 21 21 H 1.48493 * 109.47313 * 330.00275 * 18 16 14 22 22 C 1.53002 * 109.46972 * 300.00293 * 5 4 2 23 23 C 1.52997 * 109.47415 * 59.99860 * 22 5 4 24 24 H 1.09000 * 109.47140 * 59.99976 * 23 22 5 25 25 C 1.52999 * 109.47269 * 180.02562 * 23 22 5 26 26 C 1.52999 * 109.47000 * 240.00185 * 2 1 3 27 27 H 1.09000 * 109.46866 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47372 * 300.00408 * 1 2 3 29 29 H 1.09004 * 109.47107 * 60.00109 * 1 2 3 30 30 H 1.09000 * 109.47140 * 60.00393 * 4 2 1 31 31 H 1.09001 * 109.47375 * 300.00376 * 4 2 1 32 32 H 0.97004 * 119.99850 * 359.97438 * 9 7 5 33 33 H 1.09002 * 109.47021 * 299.99562 * 10 9 7 34 34 H 1.09000 * 109.47574 * 59.99945 * 10 9 7 35 35 H 1.09000 * 109.46870 * 59.99786 * 12 11 10 36 36 H 1.09001 * 109.47372 * 179.97438 * 12 11 10 37 37 H 1.08996 * 109.47261 * 300.00175 * 12 11 10 38 38 H 1.08992 * 109.47399 * 60.00036 * 13 11 10 39 39 H 1.09001 * 109.47194 * 180.02562 * 13 11 10 40 40 H 1.09004 * 109.46724 * 299.99550 * 13 11 10 41 41 H 0.97001 * 120.00323 * 180.02562 * 17 16 14 42 42 H 1.09000 * 109.46986 * 299.99742 * 22 5 4 43 43 H 1.09001 * 109.47601 * 180.02562 * 22 5 4 44 44 H 1.09001 * 109.47362 * 180.02562 * 25 23 22 45 45 H 1.09002 * 109.46716 * 299.99747 * 25 23 22 46 46 H 1.09000 * 109.47486 * 59.99665 * 25 23 22 47 47 H 1.08993 * 109.47839 * 60.00073 * 26 2 1 48 48 H 1.09000 * 109.47160 * 299.99635 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5700 -0.7207 1.2496 6 1 3.9333 -1.2348 2.1393 7 6 4.0718 0.7003 1.2498 8 8 4.7691 1.0973 0.3404 9 7 3.7458 1.5299 2.2607 10 6 4.2332 2.9115 2.2606 11 6 3.7223 3.6326 3.5096 12 6 2.1923 3.6316 3.5092 13 6 4.2325 2.9118 4.7591 14 6 4.2242 5.0536 3.5099 15 1 4.8450 5.4071 2.7000 16 6 3.8907 5.9022 4.5441 17 7 3.1351 5.4716 5.5306 18 14 4.5134 7.6634 4.5448 19 1 3.5354 8.5344 3.8447 20 1 4.6779 8.1298 5.9450 21 1 5.8217 7.7262 3.8453 22 6 4.0805 -1.4415 0.0004 23 6 3.5705 -0.7204 -1.2489 24 1 3.9335 0.3074 -1.2487 25 6 4.0805 -1.4416 -2.4981 26 6 2.0400 -0.7212 -1.2493 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 1.6767 -1.7489 1.2493 31 1 1.6766 -0.2074 2.1392 32 1 3.1878 1.2125 2.9879 33 1 5.3232 2.9122 2.2606 34 1 3.8694 3.4251 1.3707 35 1 1.8297 2.6036 3.5093 36 1 1.8284 4.1449 4.3993 37 1 1.8289 4.1450 2.6191 38 1 5.3224 2.9126 4.7594 39 1 3.8682 3.4252 5.6489 40 1 3.8698 1.8839 4.7591 41 1 2.9002 6.0687 6.2580 42 1 3.7175 -2.4693 0.0002 43 1 5.1705 -1.4416 0.0007 44 1 3.7176 -0.9276 -3.3881 45 1 5.1706 -1.4416 -2.4981 46 1 3.7173 -2.4693 -2.4981 47 1 1.6768 -0.2075 -2.1392 48 1 1.6767 -1.7489 -1.2493 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000457998352.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:40 Heat of formation + Delta-G solvation = -81.681306 kcal Electronic energy + Delta-G solvation = -23829.896486 eV Core-core repulsion = 20689.946314 eV Total energy + Delta-G solvation = -3139.950171 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.36149 -37.72626 -36.18556 -33.71378 -32.96954 -32.03111 -30.62846 -26.61089 -26.30011 -25.72284 -25.67806 -25.03372 -22.71526 -20.65973 -20.43827 -19.20744 -18.68935 -16.48287 -15.71713 -15.47688 -15.15956 -14.90663 -14.64963 -14.57849 -13.72068 -13.64217 -13.46752 -12.91991 -12.65139 -12.52009 -12.35116 -12.22717 -12.17935 -11.78869 -11.78102 -11.65797 -11.37493 -11.18837 -11.07676 -10.87363 -10.69185 -10.64929 -10.46410 -10.32403 -10.18688 -9.99423 -9.96925 -9.62221 -9.38481 -9.01477 -8.76583 -8.42086 -8.24571 -6.01624 -4.11587 3.14251 3.28385 3.35411 3.39348 3.82810 4.40658 4.66343 4.72912 4.74389 5.05905 5.12742 5.25152 5.30136 5.38105 5.40129 5.50521 5.61191 5.64515 5.70973 5.80986 5.84118 5.91348 5.92894 5.95557 6.02670 6.15668 6.25749 6.29375 6.34719 6.36723 6.39310 6.46432 6.52561 6.71165 6.83144 6.83494 6.95411 7.02855 7.11477 7.37161 7.56372 7.69908 8.01577 8.10357 8.19777 8.39671 8.79800 8.89748 9.54243 10.99698 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.026400 B = 0.004133 C = 0.003976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1060.331909 B = 6772.391010 C = 7041.022468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.096 4.096 3 H 0.073 0.927 4 C -0.103 4.103 5 C -0.112 4.112 6 H 0.091 0.909 7 C 0.511 3.489 8 O -0.549 6.549 9 N -0.717 5.717 10 C 0.133 3.867 11 C 0.056 3.944 12 C -0.129 4.129 13 C -0.130 4.130 14 C -0.505 4.505 15 H 0.057 0.943 16 C 0.066 3.934 17 N -0.886 5.886 18 Si 0.892 3.108 19 H -0.281 1.281 20 H -0.287 1.287 21 H -0.274 1.274 22 C -0.088 4.088 23 C -0.108 4.108 24 H 0.103 0.897 25 C -0.142 4.142 26 C -0.105 4.105 27 H 0.051 0.949 28 H 0.056 0.944 29 H 0.053 0.947 30 H 0.070 0.930 31 H 0.067 0.933 32 H 0.396 0.604 33 H 0.052 0.948 34 H 0.052 0.948 35 H 0.006 0.994 36 H 0.084 0.916 37 H 0.026 0.974 38 H 0.026 0.974 39 H 0.085 0.915 40 H 0.006 0.994 41 H 0.259 0.741 42 H 0.061 0.939 43 H 0.065 0.935 44 H 0.050 0.950 45 H 0.052 0.948 46 H 0.046 0.954 47 H 0.057 0.943 48 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.881 -14.443 -8.161 17.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.115 4.115 3 H 0.091 0.909 4 C -0.141 4.141 5 C -0.133 4.133 6 H 0.110 0.890 7 C 0.297 3.703 8 O -0.428 6.428 9 N -0.367 5.367 10 C 0.010 3.990 11 C 0.055 3.945 12 C -0.187 4.187 13 C -0.188 4.188 14 C -0.544 4.544 15 H 0.075 0.925 16 C -0.135 4.135 17 N -0.525 5.525 18 Si 0.720 3.280 19 H -0.207 1.207 20 H -0.213 1.213 21 H -0.199 1.199 22 C -0.126 4.126 23 C -0.126 4.126 24 H 0.121 0.879 25 C -0.199 4.199 26 C -0.143 4.143 27 H 0.070 0.930 28 H 0.075 0.925 29 H 0.072 0.928 30 H 0.088 0.912 31 H 0.086 0.914 32 H 0.231 0.769 33 H 0.071 0.929 34 H 0.071 0.929 35 H 0.025 0.975 36 H 0.103 0.897 37 H 0.045 0.955 38 H 0.045 0.955 39 H 0.104 0.896 40 H 0.024 0.976 41 H 0.070 0.930 42 H 0.079 0.921 43 H 0.084 0.916 44 H 0.069 0.931 45 H 0.071 0.929 46 H 0.065 0.935 47 H 0.076 0.924 48 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -3.456 -14.062 -8.622 16.853 hybrid contribution 0.044 0.840 0.487 0.972 sum -3.412 -13.222 -8.135 15.895 Atomic orbital electron populations 1.21807 0.95234 1.01370 1.01822 1.21160 0.95370 1.00199 0.94731 0.90874 1.21572 0.92900 1.01216 0.98419 1.21385 0.97056 0.94258 1.00614 0.89042 1.20468 0.80339 0.87385 0.82137 1.90578 1.38816 1.77560 1.35846 1.46338 1.52550 1.13507 1.24305 1.21668 0.98003 0.78951 1.00367 1.18351 0.92770 0.94192 0.89192 1.21809 0.97770 0.96695 1.02385 1.21820 0.98535 0.95726 1.02684 1.20990 1.31418 0.94832 1.07135 0.92514 1.24871 0.94886 0.98384 0.95335 1.69801 1.36766 1.35348 1.10554 0.86587 0.79335 0.84907 0.77139 1.20726 1.21275 1.19918 1.21321 1.00705 0.97677 0.92901 1.21437 0.94658 1.02741 0.93809 0.87914 1.21774 1.00886 0.99657 0.97587 1.21646 0.95588 0.99875 0.97171 0.92957 0.92526 0.92831 0.91172 0.91439 0.76861 0.92921 0.92935 0.97534 0.89689 0.95526 0.95505 0.89641 0.97551 0.93040 0.92053 0.91598 0.93132 0.92876 0.93451 0.92396 0.92520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.52 9.19 37.16 0.34 -1.17 16 2 C -0.10 -1.15 2.50 -90.62 -0.23 -1.38 16 3 H 0.07 1.09 7.22 -51.93 -0.37 0.72 16 4 C -0.10 -1.15 4.64 -26.73 -0.12 -1.28 16 5 C -0.11 -1.41 3.01 -91.77 -0.28 -1.68 16 6 H 0.09 1.02 8.14 -51.93 -0.42 0.59 16 7 C 0.51 8.57 5.64 -10.99 -0.06 8.50 16 8 O -0.55 -10.97 13.66 5.56 0.08 -10.89 16 9 N -0.72 -12.56 4.85 -60.30 -0.29 -12.86 16 10 C 0.13 2.81 4.50 -4.04 -0.02 2.79 16 11 C 0.06 1.28 0.50 -155.66 -0.08 1.20 16 12 C -0.13 -2.88 8.08 37.16 0.30 -2.58 16 13 C -0.13 -2.92 8.08 37.16 0.30 -2.62 16 14 C -0.51 -13.24 8.01 -34.44 -0.28 -13.51 16 15 H 0.06 1.51 7.74 -52.48 -0.41 1.10 16 16 C 0.07 1.74 5.15 -17.82 -0.09 1.65 16 17 N -0.89 -23.56 9.35 55.43 0.52 -23.04 16 18 Si 0.89 20.74 29.54 -169.99 -5.02 15.72 16 19 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 20 H -0.29 -6.65 7.11 56.52 0.40 -6.24 16 21 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 22 C -0.09 -1.06 4.37 -26.73 -0.12 -1.18 16 23 C -0.11 -1.37 2.43 -90.60 -0.22 -1.59 16 24 H 0.10 1.66 5.51 -51.93 -0.29 1.37 16 25 C -0.14 -1.53 9.19 37.16 0.34 -1.19 16 26 C -0.11 -1.19 4.49 -26.70 -0.12 -1.31 16 27 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 28 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.07 0.76 7.56 -51.93 -0.39 0.36 16 32 H 0.40 6.36 5.58 -40.82 -0.23 6.14 16 33 H 0.05 1.18 8.14 -51.93 -0.42 0.76 16 34 H 0.05 1.18 8.14 -51.93 -0.42 0.75 16 35 H 0.01 0.11 6.86 -51.93 -0.36 -0.24 16 36 H 0.08 2.11 6.07 -51.93 -0.32 1.80 16 37 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 39 H 0.08 2.13 6.07 -51.93 -0.32 1.81 16 40 H 0.01 0.11 6.86 -51.93 -0.36 -0.25 16 41 H 0.26 6.68 8.31 -40.82 -0.34 6.34 16 42 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 43 H 0.07 0.86 8.10 -51.93 -0.42 0.44 16 44 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 45 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 46 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 47 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 48 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 LS Contribution 356.51 15.07 5.37 5.37 Total: -1.00 -27.33 356.51 -8.60 -35.93 By element: Atomic # 1 Polarization: 14.04 SS G_CDS: -8.93 Total: 5.11 kcal Atomic # 6 Polarization: -15.02 SS G_CDS: -0.33 Total: -15.35 kcal Atomic # 7 Polarization: -36.12 SS G_CDS: 0.23 Total: -35.90 kcal Atomic # 8 Polarization: -10.97 SS G_CDS: 0.08 Total: -10.89 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.72 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -27.33 -8.60 -35.93 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457998352.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.755 kcal (2) G-P(sol) polarization free energy of solvation -27.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.926 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds