Wall clock time and date at job start Tue Mar 31 2020 05:36:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09005 * 109.46541 * 2 1 4 4 C 1.52996 * 109.47302 * 119.99396 * 2 1 3 5 5 C 1.52998 * 109.46928 * 60.00136 * 4 2 1 6 6 C 1.50706 * 109.47347 * 179.97438 * 5 4 2 7 7 O 1.21283 * 119.99503 * 0.02562 * 6 5 4 8 8 N 1.34769 * 120.00318 * 180.02562 * 6 5 4 9 9 C 1.46496 * 120.00209 * 180.02562 * 8 6 5 10 10 C 1.52998 * 109.47238 * 179.97438 * 9 8 6 11 11 C 1.52998 * 109.47322 * 59.99965 * 10 9 8 12 12 C 1.52997 * 109.47291 * 299.99637 * 10 9 8 13 13 C 1.50706 * 109.47348 * 179.97438 * 10 9 8 14 14 H 1.08000 * 119.99302 * 359.97438 * 13 10 9 15 15 C 1.37871 * 120.00436 * 179.72505 * 13 10 9 16 16 N 1.31515 * 119.99684 * 359.97438 * 15 13 10 17 17 Si 1.86800 * 120.00405 * 180.02562 * 15 13 10 18 18 H 1.48497 * 109.47050 * 59.99579 * 17 15 13 19 19 H 1.48496 * 109.47289 * 179.97438 * 17 15 13 20 20 H 1.48504 * 109.46492 * 299.99554 * 17 15 13 21 21 C 1.53001 * 109.46825 * 60.00021 * 5 4 2 22 22 C 1.52996 * 109.47350 * 299.99720 * 21 5 4 23 23 H 1.08994 * 109.47235 * 300.00126 * 22 21 5 24 24 C 1.53001 * 109.47350 * 179.97438 * 22 21 5 25 25 C 1.52993 * 109.47094 * 239.99903 * 2 1 3 26 26 H 1.09000 * 109.47381 * 299.99945 * 1 2 3 27 27 H 1.09002 * 109.47232 * 60.00309 * 1 2 3 28 28 H 1.09005 * 109.46541 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47441 * 300.00623 * 4 2 1 30 30 H 1.08994 * 109.47235 * 180.02562 * 4 2 1 31 31 H 1.08998 * 109.47779 * 300.00305 * 5 4 2 32 32 H 0.97005 * 119.99982 * 359.97438 * 8 6 5 33 33 H 1.09000 * 109.47435 * 59.99790 * 9 8 6 34 34 H 1.09002 * 109.46784 * 299.99425 * 9 8 6 35 35 H 1.09005 * 109.47120 * 180.02562 * 11 10 9 36 36 H 1.09002 * 109.46792 * 300.00022 * 11 10 9 37 37 H 1.09002 * 109.47539 * 59.99947 * 11 10 9 38 38 H 1.08996 * 109.47350 * 300.00373 * 12 10 9 39 39 H 1.09002 * 109.46917 * 59.99921 * 12 10 9 40 40 H 1.08995 * 109.47505 * 180.02562 * 12 10 9 41 41 H 0.97004 * 120.00247 * 180.02562 * 16 15 13 42 42 H 1.09005 * 109.47106 * 60.00414 * 21 5 4 43 43 H 1.09008 * 109.47150 * 179.97438 * 21 5 4 44 44 H 1.09005 * 109.47106 * 300.00693 * 24 22 21 45 45 H 1.08995 * 109.46867 * 60.00170 * 24 22 21 46 46 H 1.08992 * 109.47138 * 180.02562 * 24 22 21 47 47 H 1.09002 * 109.47712 * 60.00076 * 25 2 1 48 48 H 1.09006 * 109.46801 * 179.97438 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7211 1.2493 5 6 1.5301 -2.1636 1.2494 6 6 2.0330 -2.8742 2.4796 7 8 2.7302 -2.2846 3.2779 8 7 1.7079 -4.1646 2.6927 9 6 2.1963 -4.8551 3.8888 10 6 1.6864 -6.2977 3.8888 11 6 2.1965 -7.0189 2.6397 12 6 0.1565 -6.2978 3.8889 13 6 2.1894 -7.0082 5.1190 14 1 2.8108 -6.4835 5.8295 15 6 1.8518 -8.3266 5.3401 16 7 1.0906 -8.9639 4.4776 17 14 2.4746 -9.2071 6.8653 18 1 1.9851 -8.5033 8.0778 19 1 1.9739 -10.6051 6.8690 20 1 3.9596 -9.2128 6.8618 21 6 2.0402 -2.8849 0.0002 22 6 1.5301 -2.1638 -1.2491 23 1 0.4402 -2.1638 -1.2491 24 6 2.0407 -2.8847 -2.4983 25 6 2.0400 -0.7212 -1.2492 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3632 -1.0277 -0.0005 29 1 1.6767 -0.2073 2.1392 30 1 3.1300 -0.7207 1.2495 31 1 0.4401 -2.1637 1.2493 32 1 1.1500 -4.6360 2.0543 33 1 1.8326 -4.3416 4.7788 34 1 3.2863 -4.8547 3.8889 35 1 1.8328 -8.0465 2.6395 36 1 1.8331 -6.5051 1.7497 37 1 3.2865 -7.0189 2.6396 38 1 -0.2069 -5.7840 4.7789 39 1 -0.2069 -5.7840 2.9990 40 1 -0.2068 -7.3255 3.8894 41 1 0.8527 -9.8914 4.6333 42 1 3.1302 -2.8849 0.0002 43 1 1.6772 -3.9127 0.0004 44 1 3.1307 -2.8843 -2.4981 45 1 1.6778 -3.9124 -2.4985 46 1 1.6777 -2.3707 -3.3883 47 1 1.6767 -0.2075 -2.1392 48 1 3.1301 -0.7208 -1.2494 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000457998562.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:22 Heat of formation + Delta-G solvation = -83.408205 kcal Electronic energy + Delta-G solvation = -23430.447644 eV Core-core repulsion = 20290.422588 eV Total energy + Delta-G solvation = -3140.025055 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.21904 -38.29201 -36.28855 -33.46200 -33.08365 -31.89890 -30.59131 -26.94794 -26.49099 -25.72254 -25.70182 -25.04070 -23.01554 -21.36099 -19.77388 -18.83136 -18.64182 -16.94526 -15.84200 -15.46601 -15.24565 -14.90358 -14.68429 -14.26624 -14.02605 -13.96822 -13.54052 -12.97028 -12.85926 -12.75578 -12.57662 -12.29470 -12.16673 -11.87654 -11.67235 -11.38475 -11.35522 -11.17272 -11.14026 -10.90844 -10.83242 -10.72554 -10.55984 -10.37536 -10.28099 -10.19101 -10.00926 -9.62337 -9.44629 -9.10114 -8.77757 -8.42476 -8.26672 -6.01285 -4.11365 3.12510 3.30528 3.34717 3.38277 3.80566 4.40674 4.51352 4.59768 4.64323 4.97907 5.03478 5.14183 5.23003 5.25332 5.28633 5.36101 5.43648 5.55510 5.59083 5.61261 5.71368 5.81966 5.82306 5.91377 5.99602 6.07161 6.14042 6.20482 6.23545 6.29054 6.33431 6.35288 6.43408 6.52520 6.80768 6.83227 6.95397 7.02904 7.08521 7.36804 7.56414 7.69972 8.01686 8.09934 8.19090 8.39772 8.77949 8.89536 9.54355 11.00025 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.029983 B = 0.003705 C = 0.003514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 933.636488 B = 7554.608998 C = 7966.268270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.092 4.092 3 H 0.070 0.930 4 C -0.092 4.092 5 C -0.108 4.108 6 C 0.506 3.494 7 O -0.555 6.555 8 N -0.717 5.717 9 C 0.131 3.869 10 C 0.056 3.944 11 C -0.129 4.129 12 C -0.130 4.130 13 C -0.506 4.506 14 H 0.056 0.944 15 C 0.067 3.933 16 N -0.886 5.886 17 Si 0.893 3.107 18 H -0.277 1.277 19 H -0.288 1.288 20 H -0.277 1.277 21 C -0.105 4.105 22 C -0.092 4.092 23 H 0.074 0.926 24 C -0.148 4.148 25 C -0.109 4.109 26 H 0.053 0.947 27 H 0.051 0.949 28 H 0.061 0.939 29 H 0.067 0.933 30 H 0.068 0.932 31 H 0.094 0.906 32 H 0.397 0.603 33 H 0.053 0.947 34 H 0.053 0.947 35 H 0.084 0.916 36 H 0.006 0.994 37 H 0.026 0.974 38 H 0.026 0.974 39 H 0.006 0.994 40 H 0.086 0.914 41 H 0.260 0.740 42 H 0.067 0.933 43 H 0.068 0.932 44 H 0.054 0.946 45 H 0.056 0.944 46 H 0.053 0.947 47 H 0.060 0.940 48 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.962 13.074 -13.341 18.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.111 4.111 3 H 0.088 0.912 4 C -0.130 4.130 5 C -0.129 4.129 6 C 0.292 3.708 7 O -0.433 6.433 8 N -0.367 5.367 9 C 0.009 3.991 10 C 0.055 3.945 11 C -0.187 4.187 12 C -0.188 4.188 13 C -0.545 4.545 14 H 0.075 0.925 15 C -0.135 4.135 16 N -0.525 5.525 17 Si 0.721 3.279 18 H -0.203 1.203 19 H -0.213 1.213 20 H -0.203 1.203 21 C -0.143 4.143 22 C -0.110 4.110 23 H 0.093 0.907 24 C -0.205 4.205 25 C -0.147 4.147 26 H 0.072 0.928 27 H 0.070 0.930 28 H 0.080 0.920 29 H 0.086 0.914 30 H 0.087 0.913 31 H 0.112 0.888 32 H 0.232 0.768 33 H 0.071 0.929 34 H 0.071 0.929 35 H 0.103 0.897 36 H 0.025 0.975 37 H 0.045 0.955 38 H 0.045 0.955 39 H 0.025 0.975 40 H 0.104 0.896 41 H 0.070 0.930 42 H 0.086 0.914 43 H 0.087 0.913 44 H 0.073 0.927 45 H 0.075 0.925 46 H 0.072 0.928 47 H 0.078 0.922 48 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -1.541 13.278 -12.773 18.489 hybrid contribution 0.043 -0.807 0.594 1.003 sum -1.498 12.471 -12.179 17.496 Atomic orbital electron populations 1.21961 0.95441 1.02134 1.01385 1.21134 0.95868 0.99119 0.94964 0.91184 1.21337 1.01244 0.93104 0.97292 1.21370 1.01880 0.96275 0.93383 1.20592 0.80646 0.82325 0.87236 1.90650 1.38707 1.66392 1.47591 1.46332 1.52577 1.11451 1.26332 1.21689 0.98050 0.94369 0.85013 1.18349 0.92774 0.88105 0.95261 1.21813 0.98534 1.03433 0.94902 1.21825 0.97783 1.02942 0.96252 1.20956 1.31392 0.96194 1.05952 0.92542 1.24871 0.94841 0.97291 0.96457 1.69794 1.36390 1.10942 1.35354 0.86637 0.79239 0.78538 0.83470 1.20297 1.21328 1.20284 1.21588 1.01436 0.98809 0.92474 1.21162 1.00634 0.94783 0.94430 0.90744 1.21830 1.01264 1.00368 0.97053 1.21638 1.00660 0.95085 0.97306 0.92760 0.92978 0.92026 0.91383 0.91319 0.88768 0.76804 0.92888 0.92871 0.89697 0.97525 0.95490 0.95510 0.97542 0.89567 0.92975 0.91399 0.91325 0.92715 0.92494 0.92840 0.92150 0.91940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.31 8.50 37.16 0.32 -0.99 16 2 C -0.09 -0.86 3.19 -90.62 -0.29 -1.15 16 3 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 4 C -0.09 -1.11 4.02 -26.73 -0.11 -1.22 16 5 C -0.11 -1.37 2.25 -91.77 -0.21 -1.58 16 6 C 0.51 8.80 7.15 -10.99 -0.08 8.72 16 7 O -0.55 -11.73 15.98 5.56 0.09 -11.64 16 8 N -0.72 -12.84 4.85 -60.30 -0.29 -13.13 16 9 C 0.13 2.83 4.50 -4.04 -0.02 2.82 16 10 C 0.06 1.30 0.50 -155.66 -0.08 1.22 16 11 C -0.13 -2.91 8.08 37.16 0.30 -2.61 16 12 C -0.13 -2.95 8.08 37.16 0.30 -2.65 16 13 C -0.51 -13.35 8.01 -34.44 -0.28 -13.62 16 14 H 0.06 1.50 7.74 -52.49 -0.41 1.10 16 15 C 0.07 1.76 5.15 -17.82 -0.09 1.66 16 16 N -0.89 -23.62 9.35 55.43 0.52 -23.10 16 17 Si 0.89 20.80 29.54 -169.99 -5.02 15.78 16 18 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 19 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 20 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 21 C -0.11 -1.18 4.38 -26.73 -0.12 -1.29 16 22 C -0.09 -0.83 2.45 -90.62 -0.22 -1.05 16 23 H 0.07 0.65 6.43 -51.93 -0.33 0.32 16 24 C -0.15 -1.24 9.19 37.16 0.34 -0.90 16 25 C -0.11 -0.95 4.73 -26.74 -0.13 -1.08 16 26 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.06 0.54 4.81 -51.93 -0.25 0.29 16 29 H 0.07 0.89 8.10 -51.93 -0.42 0.47 16 30 H 0.07 0.91 8.10 -51.93 -0.42 0.49 16 31 H 0.09 1.09 6.43 -51.93 -0.33 0.75 16 32 H 0.40 6.44 5.58 -40.82 -0.23 6.21 16 33 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 34 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 35 H 0.08 2.11 6.09 -51.93 -0.32 1.80 16 36 H 0.01 0.12 6.86 -51.93 -0.36 -0.24 16 37 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.01 0.11 6.86 -51.93 -0.36 -0.24 16 40 H 0.09 2.15 6.05 -51.93 -0.31 1.84 16 41 H 0.26 6.72 8.31 -40.82 -0.34 6.38 16 42 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 43 H 0.07 0.77 7.56 -51.92 -0.39 0.38 16 44 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 45 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 46 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 47 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 48 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 LS Contribution 356.00 15.07 5.36 5.36 Total: -1.00 -28.03 356.00 -8.45 -36.49 By element: Atomic # 1 Polarization: 12.72 SS G_CDS: -8.76 Total: 3.96 kcal Atomic # 6 Polarization: -13.36 SS G_CDS: -0.35 Total: -13.71 kcal Atomic # 7 Polarization: -36.46 SS G_CDS: 0.23 Total: -36.23 kcal Atomic # 8 Polarization: -11.73 SS G_CDS: 0.09 Total: -11.64 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.78 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -28.03 -8.45 -36.49 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457998562.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.920 kcal (2) G-P(sol) polarization free energy of solvation -28.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.488 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds