Wall clock time and date at job start Tue Mar 31 2020 05:30:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 109.46759 * 2 1 4 4 C 1.52994 * 109.47078 * 239.99536 * 2 1 3 5 5 C 1.52998 * 109.47134 * 300.00056 * 4 2 1 6 6 C 1.52998 * 109.47396 * 299.99848 * 5 4 2 7 7 H 1.08992 * 109.47351 * 300.00420 * 6 5 4 8 8 C 1.50704 * 109.47190 * 180.02562 * 6 5 4 9 9 O 1.21286 * 119.99628 * 240.00008 * 8 6 5 10 10 N 1.34771 * 120.00141 * 60.00340 * 8 6 5 11 11 C 1.46498 * 120.00369 * 179.97438 * 10 8 6 12 12 C 1.52994 * 109.47510 * 179.97438 * 11 10 8 13 13 C 1.53001 * 109.47369 * 300.00295 * 12 11 10 14 14 C 1.53003 * 109.47078 * 59.99956 * 12 11 10 15 15 C 1.50695 * 109.47346 * 180.02562 * 12 11 10 16 16 H 1.08000 * 120.00287 * 1.34617 * 15 12 11 17 17 C 1.37882 * 120.00096 * 181.34911 * 15 12 11 18 18 N 1.31510 * 119.99732 * 193.97296 * 17 15 12 19 19 Si 1.86796 * 120.00149 * 13.97476 * 17 15 12 20 20 H 1.48501 * 109.47117 * 84.54478 * 19 17 15 21 21 H 1.48493 * 109.47020 * 204.55213 * 19 17 15 22 22 H 1.48508 * 109.47010 * 324.55297 * 19 17 15 23 23 C 1.53007 * 109.46759 * 60.00085 * 6 5 4 24 24 C 1.52998 * 109.47097 * 300.00098 * 23 6 5 25 25 H 1.09000 * 109.46864 * 300.00327 * 24 23 6 26 26 C 1.52994 * 109.47134 * 180.02562 * 24 23 6 27 27 H 1.09004 * 109.47461 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.47372 * 300.00626 * 1 2 3 29 29 H 1.09000 * 109.47128 * 60.00308 * 1 2 3 30 30 H 1.09000 * 109.47013 * 60.00086 * 4 2 1 31 31 H 1.09000 * 109.47398 * 180.02562 * 4 2 1 32 32 H 1.09006 * 109.47263 * 60.00381 * 5 4 2 33 33 H 1.08999 * 109.47012 * 179.97438 * 5 4 2 34 34 H 0.97004 * 119.99835 * 359.97438 * 10 8 6 35 35 H 1.09008 * 109.46872 * 300.00221 * 11 10 8 36 36 H 1.09000 * 109.46666 * 59.99588 * 11 10 8 37 37 H 1.09000 * 109.47232 * 69.36414 * 13 12 11 38 38 H 1.08995 * 109.47499 * 189.36919 * 13 12 11 39 39 H 1.09004 * 109.46568 * 309.36954 * 13 12 11 40 40 H 1.09000 * 109.47128 * 60.00156 * 14 12 11 41 41 H 1.08999 * 109.47052 * 180.02562 * 14 12 11 42 42 H 1.09004 * 109.47461 * 299.99936 * 14 12 11 43 43 H 0.97005 * 120.00141 * 179.97438 * 18 17 15 44 44 H 1.08998 * 109.46708 * 60.00426 * 23 6 5 45 45 H 1.09000 * 109.46917 * 180.02562 * 23 6 5 46 46 H 1.09006 * 109.47191 * 300.00218 * 26 24 23 47 47 H 1.09008 * 109.47328 * 59.99954 * 26 24 23 48 48 H 1.08998 * 109.47705 * 180.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 1.5300 -2.1638 -1.2490 6 6 2.0400 -2.8850 0.0002 7 1 3.1299 -2.8850 0.0003 8 6 1.5381 -4.3060 0.0000 9 8 0.8408 -4.7030 0.9095 10 7 1.8642 -5.1357 -1.0108 11 6 1.3768 -6.5172 -1.0108 12 6 1.8867 -7.2380 -2.2603 13 6 1.3758 -6.5169 -3.5093 14 6 3.4167 -7.2370 -2.2610 15 6 1.3848 -8.6589 -2.2606 16 1 0.7464 -9.0063 -1.4618 17 6 1.7408 -9.5156 -3.2807 18 7 1.0992 -10.6527 -3.4383 19 14 3.1341 -9.0610 -4.4388 20 1 4.4307 -9.4570 -3.8326 21 1 2.9548 -9.7699 -5.7312 22 1 3.1246 -7.5945 -4.6730 23 6 1.5299 -2.1636 1.2494 24 6 2.0399 -0.7212 1.2493 25 1 3.1299 -0.7212 1.2493 26 6 1.5305 0.0000 2.4988 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 1.6767 -0.2075 -2.1391 31 1 3.1300 -0.7218 -1.2490 32 1 0.4399 -2.1638 -1.2491 33 1 1.8929 -2.6775 -2.1392 34 1 2.4217 -4.8181 -1.7384 35 1 1.7405 -7.0308 -0.1207 36 1 0.2868 -6.5179 -1.0107 37 1 1.8685 -5.5486 -3.5970 38 1 1.5960 -7.1179 -4.3915 39 1 0.2986 -6.3705 -3.4290 40 1 3.7808 -7.7507 -1.3713 41 1 3.7800 -7.7501 -3.1514 42 1 3.7795 -6.2090 -2.2611 43 1 1.3493 -11.2553 -4.1562 44 1 0.4399 -2.1637 1.2494 45 1 1.8936 -2.6772 2.1395 46 1 0.4404 0.0000 2.4992 47 1 1.8942 -0.5139 3.3887 48 1 1.8934 1.0278 2.4986 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000458048305.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:57 Heat of formation + Delta-G solvation = -61.215803 kcal Electronic energy + Delta-G solvation = -23478.136792 eV Core-core repulsion = 20339.074072 eV Total energy + Delta-G solvation = -3139.062721 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.34337 -38.53849 -36.65938 -33.54366 -32.78211 -31.90779 -31.37019 -27.81279 -26.56296 -26.37340 -25.55899 -24.87035 -22.88635 -21.82625 -19.80855 -19.13087 -18.60275 -16.82441 -16.12494 -15.81384 -15.36703 -15.23718 -14.99389 -14.86755 -14.05791 -13.77605 -13.53289 -13.17139 -12.92071 -12.75321 -12.74233 -12.51137 -12.39225 -12.19540 -12.11068 -12.04459 -11.90879 -11.43540 -11.24515 -11.20848 -10.82594 -10.48898 -10.42690 -10.34183 -10.30525 -10.17820 -10.12400 -10.07081 -9.35936 -9.09009 -8.69123 -8.51970 -8.42786 -6.15378 -4.12585 3.01271 3.23095 3.30097 3.37779 3.65839 4.34753 4.48204 4.51372 4.55445 4.93746 4.95229 5.08083 5.13133 5.15388 5.20934 5.29945 5.41477 5.45900 5.53683 5.57222 5.66240 5.75034 5.78457 5.82967 5.86594 5.89725 5.95085 6.04085 6.06128 6.06917 6.18136 6.18534 6.26650 6.35175 6.45122 6.48373 6.52618 6.62853 6.69039 6.80959 6.98002 7.22015 7.42544 7.71884 7.98197 8.44493 8.65574 8.90252 9.48532 10.97791 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.034215 B = 0.003743 C = 0.003603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 818.165727 B = 7479.238618 C = 7768.711578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.087 4.087 3 H 0.067 0.933 4 C -0.112 4.112 5 C -0.113 4.113 6 C -0.106 4.106 7 H 0.092 0.908 8 C 0.508 3.492 9 O -0.549 6.549 10 N -0.722 5.722 11 C 0.141 3.859 12 C 0.028 3.972 13 C -0.141 4.141 14 C -0.147 4.147 15 C -0.513 4.513 16 H 0.076 0.924 17 C 0.075 3.925 18 N -0.891 5.891 19 Si 0.886 3.114 20 H -0.286 1.286 21 H -0.305 1.305 22 H -0.249 1.249 23 C -0.094 4.094 24 C -0.087 4.087 25 H 0.068 0.932 26 C -0.148 4.148 27 H 0.064 0.936 28 H 0.055 0.945 29 H 0.051 0.949 30 H 0.064 0.936 31 H 0.063 0.937 32 H 0.072 0.928 33 H 0.066 0.934 34 H 0.395 0.605 35 H 0.060 0.940 36 H 0.062 0.938 37 H 0.021 0.979 38 H 0.056 0.944 39 H 0.046 0.954 40 H 0.053 0.947 41 H 0.041 0.959 42 H 0.029 0.971 43 H 0.265 0.735 44 H 0.073 0.927 45 H 0.067 0.933 46 H 0.058 0.942 47 H 0.054 0.946 48 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.676 22.490 4.608 23.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.105 4.105 3 H 0.085 0.915 4 C -0.150 4.150 5 C -0.151 4.151 6 C -0.128 4.128 7 H 0.110 0.890 8 C 0.294 3.706 9 O -0.427 6.427 10 N -0.373 5.373 11 C 0.019 3.981 12 C 0.027 3.973 13 C -0.198 4.198 14 C -0.204 4.204 15 C -0.551 4.551 16 H 0.094 0.906 17 C -0.127 4.127 18 N -0.528 5.528 19 Si 0.718 3.282 20 H -0.214 1.214 21 H -0.234 1.234 22 H -0.175 1.175 23 C -0.132 4.132 24 C -0.106 4.106 25 H 0.087 0.913 26 C -0.206 4.206 27 H 0.082 0.918 28 H 0.074 0.926 29 H 0.070 0.930 30 H 0.083 0.917 31 H 0.081 0.919 32 H 0.090 0.910 33 H 0.085 0.915 34 H 0.230 0.770 35 H 0.079 0.921 36 H 0.080 0.920 37 H 0.040 0.960 38 H 0.074 0.926 39 H 0.066 0.934 40 H 0.072 0.928 41 H 0.059 0.941 42 H 0.048 0.952 43 H 0.074 0.926 44 H 0.092 0.908 45 H 0.086 0.914 46 H 0.077 0.923 47 H 0.073 0.927 48 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 3.131 21.993 5.159 22.806 hybrid contribution 1.148 0.075 -1.085 1.581 sum 4.278 22.069 4.074 22.846 Atomic orbital electron populations 1.22015 0.95334 1.02503 1.01349 1.21129 0.96094 0.98795 0.94505 0.91458 1.21559 1.00563 0.95185 0.97674 1.21569 1.01794 0.95476 0.96243 1.21341 1.01691 0.92178 0.97573 0.89036 1.20582 0.80603 0.87325 0.82103 1.90673 1.38342 1.77551 1.36127 1.46337 1.52964 1.13530 1.24480 1.21487 0.98636 0.78617 0.99360 1.18714 0.91608 0.96256 0.90704 1.22285 1.00112 0.97506 0.99931 1.22356 0.98737 0.98401 1.00913 1.20730 1.31578 0.92664 1.10151 0.90576 1.24977 0.96119 0.94964 0.96686 1.69952 1.39278 1.11400 1.32165 0.87292 0.82768 0.78591 0.79520 1.21366 1.23397 1.17521 1.21417 1.01810 0.93578 0.96371 1.21162 1.00005 0.94888 0.94541 0.91349 1.21870 1.01583 0.99793 0.97308 0.91755 0.92566 0.93029 0.91708 0.91852 0.90984 0.91486 0.77001 0.92122 0.92010 0.95983 0.92560 0.93439 0.92822 0.94055 0.95209 0.92559 0.90839 0.91407 0.92285 0.92722 0.92933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.30 8.15 37.16 0.30 -1.00 16 2 C -0.09 -0.70 2.72 -90.62 -0.25 -0.95 16 3 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 4 C -0.11 -0.92 5.45 -26.74 -0.15 -1.07 16 5 C -0.11 -1.14 4.82 -26.73 -0.13 -1.27 16 6 C -0.11 -1.24 2.53 -91.77 -0.23 -1.47 16 7 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 8 C 0.51 8.20 7.15 -10.99 -0.08 8.12 16 9 O -0.55 -11.03 15.99 5.55 0.09 -10.95 16 10 N -0.72 -11.80 4.90 -60.29 -0.30 -12.09 16 11 C 0.14 2.86 4.49 -4.05 -0.02 2.84 16 12 C 0.03 0.62 0.50 -155.66 -0.08 0.54 16 13 C -0.14 -2.86 7.53 37.16 0.28 -2.58 16 14 C -0.15 -2.98 7.52 37.16 0.28 -2.70 16 15 C -0.51 -13.84 8.62 -34.44 -0.30 -14.14 16 16 H 0.08 2.26 7.99 -52.49 -0.42 1.84 16 17 C 0.08 2.09 5.32 -17.82 -0.09 2.00 16 18 N -0.89 -26.71 13.96 55.43 0.77 -25.93 16 19 Si 0.89 21.07 22.79 -169.99 -3.87 17.20 16 20 H -0.29 -6.79 7.10 56.52 0.40 -6.38 16 21 H -0.31 -7.43 7.11 56.52 0.40 -7.03 16 22 H -0.25 -5.37 4.65 56.52 0.26 -5.11 16 23 C -0.09 -1.06 3.50 -26.73 -0.09 -1.15 16 24 C -0.09 -0.76 2.49 -90.62 -0.23 -0.99 16 25 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 26 C -0.15 -1.19 8.84 37.15 0.33 -0.86 16 27 H 0.06 0.63 4.81 -51.93 -0.25 0.38 16 28 H 0.06 0.44 6.43 -51.93 -0.33 0.11 16 29 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.07 0.79 6.43 -51.93 -0.33 0.46 16 33 H 0.07 0.65 7.56 -51.93 -0.39 0.26 16 34 H 0.40 5.61 5.68 -40.82 -0.23 5.38 16 35 H 0.06 1.30 8.14 -51.92 -0.42 0.88 16 36 H 0.06 1.34 8.14 -51.93 -0.42 0.91 16 37 H 0.02 0.37 7.13 -51.93 -0.37 0.00 16 38 H 0.06 1.22 4.30 -51.93 -0.22 0.99 16 39 H 0.05 0.95 8.12 -51.93 -0.42 0.53 16 40 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 41 H 0.04 0.88 2.25 -51.93 -0.12 0.77 16 42 H 0.03 0.49 6.86 -51.93 -0.36 0.14 16 43 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 44 H 0.07 0.92 6.39 -51.93 -0.33 0.59 16 45 H 0.07 0.84 8.10 -51.93 -0.42 0.42 16 46 H 0.06 0.48 6.43 -51.93 -0.33 0.14 16 47 H 0.05 0.44 8.14 -51.92 -0.42 0.02 16 48 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 LS Contribution 342.48 15.07 5.16 5.16 Total: -1.00 -30.34 342.48 -7.05 -37.39 By element: Atomic # 1 Polarization: 12.35 SS G_CDS: -8.46 Total: 3.89 kcal Atomic # 6 Polarization: -14.22 SS G_CDS: -0.45 Total: -14.67 kcal Atomic # 7 Polarization: -38.51 SS G_CDS: 0.48 Total: -38.03 kcal Atomic # 8 Polarization: -11.03 SS G_CDS: 0.09 Total: -10.95 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -3.87 Total: 17.20 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -30.34 -7.05 -37.39 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000458048305.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.822 kcal (2) G-P(sol) polarization free energy of solvation -30.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.394 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds