Wall clock time and date at job start Tue Mar 31 2020 05:30:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47097 * 2 1 4 4 C 1.52997 * 109.46978 * 240.00199 * 2 1 3 5 5 C 1.53006 * 109.47445 * 179.97438 * 4 2 1 6 6 C 1.53002 * 109.46711 * 59.99695 * 5 4 2 7 7 H 1.09002 * 109.47070 * 60.00376 * 6 5 4 8 8 C 1.50703 * 109.46966 * 180.02562 * 6 5 4 9 9 O 1.21278 * 119.99985 * 119.99692 * 8 6 5 10 10 N 1.34777 * 120.00161 * 300.00385 * 8 6 5 11 11 C 1.46496 * 120.00271 * 180.02562 * 10 8 6 12 12 C 1.52997 * 109.47194 * 179.97438 * 11 10 8 13 13 C 1.53006 * 109.46974 * 299.99572 * 12 11 10 14 14 C 1.53002 * 109.47415 * 59.99942 * 12 11 10 15 15 C 1.50703 * 109.47084 * 179.97438 * 12 11 10 16 16 H 1.07996 * 119.99751 * 359.97438 * 15 12 11 17 17 C 1.37880 * 119.99788 * 179.97438 * 15 12 11 18 18 N 1.31511 * 120.00327 * 359.97438 * 17 15 12 19 19 Si 1.86803 * 119.99743 * 180.02562 * 17 15 12 20 20 H 1.48494 * 109.47116 * 59.99931 * 19 17 15 21 21 H 1.48505 * 109.46988 * 180.02562 * 19 17 15 22 22 H 1.48506 * 109.47061 * 299.99705 * 19 17 15 23 23 C 1.53000 * 109.47233 * 300.00001 * 6 5 4 24 24 C 1.53001 * 109.46886 * 60.00670 * 23 6 5 25 25 H 1.09000 * 109.47437 * 180.02562 * 24 23 6 26 26 C 1.52996 * 109.47486 * 59.99437 * 24 23 6 27 27 H 1.09002 * 109.46838 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.46698 * 299.99981 * 1 2 3 29 29 H 1.09001 * 109.47142 * 60.00035 * 1 2 3 30 30 H 1.09001 * 109.47375 * 59.99908 * 4 2 1 31 31 H 1.09002 * 109.47497 * 299.99550 * 4 2 1 32 32 H 1.09002 * 109.46589 * 300.00331 * 5 4 2 33 33 H 1.08996 * 109.47165 * 179.97438 * 5 4 2 34 34 H 0.97005 * 119.99463 * 359.97438 * 10 8 6 35 35 H 1.09002 * 109.47021 * 299.99722 * 11 10 8 36 36 H 1.09001 * 109.47001 * 59.99554 * 11 10 8 37 37 H 1.09000 * 109.46866 * 60.00225 * 13 12 11 38 38 H 1.09001 * 109.46611 * 180.02562 * 13 12 11 39 39 H 1.08988 * 109.47066 * 300.00373 * 13 12 11 40 40 H 1.08992 * 109.47063 * 59.99950 * 14 12 11 41 41 H 1.08996 * 109.47407 * 180.02562 * 14 12 11 42 42 H 1.09004 * 109.46733 * 299.99664 * 14 12 11 43 43 H 0.97000 * 120.00354 * 179.97438 * 18 17 15 44 44 H 1.09001 * 109.47194 * 179.97438 * 23 6 5 45 45 H 1.08992 * 109.47399 * 300.00166 * 23 6 5 46 46 H 1.08996 * 109.47452 * 300.00003 * 26 24 23 47 47 H 1.09001 * 109.46997 * 60.00430 * 26 24 23 48 48 H 1.09000 * 109.47054 * 180.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5700 -0.7207 -1.2497 6 6 4.0805 -1.4416 -0.0004 7 1 3.7175 -2.4694 -0.0002 8 6 5.5875 -1.4406 -0.0005 9 8 6.1936 -0.9150 0.9091 10 7 6.2618 -2.0237 -1.0113 11 6 7.7268 -2.0232 -1.0111 12 6 8.2372 -2.7445 -2.2601 13 6 7.7277 -4.1873 -2.2599 14 6 7.7272 -2.0237 -3.5096 15 6 9.7442 -2.7435 -2.2602 16 1 10.2839 -2.2748 -1.4506 17 6 10.4339 -3.3408 -3.2939 18 7 9.7768 -3.9119 -4.2795 19 14 12.3020 -3.3401 -3.2936 20 1 12.7970 -4.0393 -2.0807 21 1 12.7974 -4.0401 -4.5060 22 1 12.7965 -1.9398 -3.2944 23 6 3.5706 -0.7203 1.2488 24 6 2.0406 -0.7209 1.2492 25 1 1.6772 -0.2067 2.1389 26 6 1.5311 -2.1636 1.2495 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3632 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.6766 -0.2074 -2.1392 31 1 1.6767 -1.7489 -1.2493 32 1 3.9329 0.3071 -1.2498 33 1 3.9333 -1.2349 -2.1394 34 1 5.7770 -2.4443 -1.7387 35 1 8.0898 -0.9954 -1.0108 36 1 8.0901 -2.5371 -0.1212 37 1 6.6377 -4.1876 -2.2600 38 1 8.0918 -4.7012 -3.1495 39 1 8.0911 -4.7007 -1.3698 40 1 8.0901 -0.9960 -3.5098 41 1 8.0904 -2.5378 -4.3994 42 1 6.6371 -2.0241 -3.5098 43 1 10.2620 -4.3319 -5.0069 44 1 3.9339 -1.2342 2.1388 45 1 3.9336 0.3074 1.2486 46 1 1.8943 -2.6774 0.3595 47 1 1.8948 -2.6772 2.1395 48 1 0.4411 -2.1639 1.2493 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000458048306.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:59 Heat of formation + Delta-G solvation = -95.627863 kcal Electronic energy + Delta-G solvation = -23355.459742 eV Core-core repulsion = 20214.904803 eV Total energy + Delta-G solvation = -3140.554939 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.41135 -39.60295 -38.05402 -35.04813 -33.90019 -32.69120 -32.41793 -28.65387 -27.69529 -27.57157 -27.23625 -26.04457 -23.30377 -23.05548 -21.13519 -20.60409 -19.30844 -18.50544 -17.70842 -16.87626 -16.61145 -16.47192 -15.79917 -15.37014 -15.23290 -14.89579 -14.79340 -14.56369 -14.16615 -13.95928 -13.86618 -13.37348 -13.32806 -13.14744 -13.09078 -12.73491 -12.67552 -12.63508 -12.52955 -12.25884 -12.16264 -12.10780 -11.96047 -11.64154 -11.49215 -11.31623 -11.26771 -11.01206 -10.78693 -10.75054 -10.53622 -10.40350 -9.91952 -8.03140 -6.19113 1.43145 1.44214 1.50936 1.71887 2.34327 2.50873 3.20197 3.65313 3.71416 3.77262 4.13460 4.19829 4.24864 4.38525 4.45017 4.46334 4.49634 4.51977 4.59893 4.70970 4.77626 4.81288 4.95684 4.98099 5.03983 5.05068 5.07841 5.11353 5.13255 5.18103 5.19263 5.23509 5.25844 5.32495 5.37229 5.41611 5.51162 5.55656 5.61103 5.66015 5.66553 5.73280 6.14561 6.20907 6.42831 6.70282 6.84760 7.35709 7.48571 8.95531 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.037452 B = 0.003445 C = 0.003335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 747.435694 B = 8126.353729 C = 8394.018148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.089 4.089 3 H 0.061 0.939 4 C -0.108 4.108 5 C -0.109 4.109 6 C -0.096 4.096 7 H 0.115 0.885 8 C 0.503 3.497 9 O -0.596 6.596 10 N -0.710 5.710 11 C 0.147 3.853 12 C 0.052 3.948 13 C -0.120 4.120 14 C -0.119 4.119 15 C -0.533 4.533 16 H 0.042 0.958 17 C 0.030 3.970 18 N -0.898 5.898 19 Si 0.944 3.056 20 H -0.277 1.277 21 H -0.281 1.281 22 H -0.278 1.278 23 C -0.090 4.090 24 C -0.080 4.080 25 H 0.074 0.926 26 C -0.153 4.153 27 H 0.065 0.935 28 H 0.055 0.945 29 H 0.057 0.943 30 H 0.074 0.926 31 H 0.079 0.921 32 H 0.054 0.946 33 H 0.073 0.927 34 H 0.408 0.592 35 H 0.034 0.966 36 H 0.034 0.966 37 H 0.038 0.962 38 H 0.063 0.937 39 H 0.016 0.984 40 H 0.016 0.984 41 H 0.063 0.937 42 H 0.038 0.962 43 H 0.261 0.739 44 H 0.053 0.947 45 H 0.049 0.951 46 H 0.062 0.938 47 H 0.049 0.951 48 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.369 3.751 4.839 21.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.107 4.107 3 H 0.079 0.921 4 C -0.146 4.146 5 C -0.147 4.147 6 C -0.117 4.117 7 H 0.133 0.867 8 C 0.291 3.709 9 O -0.477 6.477 10 N -0.361 5.361 11 C 0.023 3.977 12 C 0.052 3.948 13 C -0.178 4.178 14 C -0.177 4.177 15 C -0.571 4.571 16 H 0.061 0.939 17 C -0.170 4.170 18 N -0.537 5.537 19 Si 0.771 3.229 20 H -0.203 1.203 21 H -0.206 1.206 22 H -0.203 1.203 23 C -0.128 4.128 24 C -0.098 4.098 25 H 0.093 0.907 26 C -0.210 4.210 27 H 0.084 0.916 28 H 0.074 0.926 29 H 0.076 0.924 30 H 0.093 0.907 31 H 0.098 0.902 32 H 0.073 0.927 33 H 0.092 0.908 34 H 0.245 0.755 35 H 0.053 0.947 36 H 0.053 0.947 37 H 0.056 0.944 38 H 0.082 0.918 39 H 0.036 0.964 40 H 0.035 0.965 41 H 0.082 0.918 42 H 0.057 0.943 43 H 0.070 0.930 44 H 0.072 0.928 45 H 0.068 0.932 46 H 0.081 0.919 47 H 0.068 0.932 48 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -19.890 4.008 5.284 20.966 hybrid contribution 1.597 -0.114 -0.226 1.617 sum -18.292 3.893 5.059 19.374 Atomic orbital electron populations 1.21851 0.93994 1.02482 1.01865 1.21159 0.96360 0.98910 0.94283 0.92084 1.21615 0.92886 1.02030 0.98036 1.21537 0.97582 1.00144 0.95409 1.21390 0.88251 1.03393 0.98682 0.86715 1.21496 0.91617 0.76850 0.80931 1.90631 1.71873 1.47408 1.37825 1.46173 1.07465 1.57383 1.25069 1.21240 0.78916 0.98657 0.98869 1.18341 0.93984 0.92390 0.90118 1.21666 0.97061 0.98256 1.00804 1.21654 0.97062 0.97918 1.01047 1.21265 0.92067 1.36686 1.07129 0.93931 1.25437 1.01641 0.94786 0.95153 1.69890 1.35936 1.37169 1.10661 0.85835 0.81691 0.78052 0.77337 1.20307 1.20647 1.20312 1.21323 0.96032 0.99767 0.95712 1.21107 0.92833 0.97434 0.98473 0.90720 1.22010 1.01765 0.95267 1.01974 0.91640 0.92587 0.92354 0.90689 0.90222 0.92712 0.90806 0.75458 0.94743 0.94710 0.94360 0.91795 0.96450 0.96479 0.91848 0.94348 0.92956 0.92845 0.93174 0.91868 0.93196 0.91047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.66 8.84 71.98 0.64 -1.02 16 2 C -0.09 -1.32 2.49 -10.79 -0.03 -1.35 16 3 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 4 C -0.11 -1.61 4.93 30.60 0.15 -1.46 16 5 C -0.11 -2.19 5.10 30.60 0.16 -2.03 16 6 C -0.10 -2.30 2.25 -11.54 -0.03 -2.32 16 7 H 0.12 2.33 6.43 -2.39 -0.02 2.32 16 8 C 0.50 17.29 7.15 87.66 0.63 17.92 16 9 O -0.60 -25.74 15.98 -3.02 -0.05 -25.79 16 10 N -0.71 -24.84 4.85 -463.07 -2.25 -27.09 16 11 C 0.15 6.43 4.50 86.38 0.39 6.82 16 12 C 0.05 2.44 0.50 -52.92 -0.03 2.41 16 13 C -0.12 -5.35 8.08 71.98 0.58 -4.77 16 14 C -0.12 -5.29 8.08 71.98 0.58 -4.71 16 15 C -0.53 -28.58 8.01 25.60 0.21 -28.38 16 16 H 0.04 2.34 7.74 -2.91 -0.02 2.31 16 17 C 0.03 1.58 5.15 84.66 0.44 2.02 16 18 N -0.90 -47.93 9.35 21.45 0.20 -47.73 16 19 Si 0.94 42.85 29.54 68.60 2.03 44.88 16 20 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 21 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 22 H -0.28 -12.53 7.11 99.48 0.71 -11.83 16 23 C -0.09 -2.12 4.02 30.59 0.12 -2.00 16 24 C -0.08 -1.33 2.72 -10.79 -0.03 -1.36 16 25 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 26 C -0.15 -2.18 8.15 71.98 0.59 -1.60 16 27 H 0.06 0.67 6.43 -2.39 -0.02 0.65 16 28 H 0.06 0.61 8.14 -2.39 -0.02 0.60 16 29 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 30 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 31 H 0.08 1.03 6.43 -2.39 -0.02 1.01 16 32 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 33 H 0.07 1.42 7.56 -2.39 -0.02 1.40 16 34 H 0.41 12.33 5.58 -92.70 -0.52 11.81 16 35 H 0.03 1.61 8.14 -2.39 -0.02 1.59 16 36 H 0.03 1.63 8.14 -2.39 -0.02 1.61 16 37 H 0.04 1.41 6.86 -2.39 -0.02 1.40 16 38 H 0.06 3.16 6.07 -2.39 -0.01 3.14 16 39 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 40 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 41 H 0.06 3.13 6.07 -2.39 -0.01 3.11 16 42 H 0.04 1.41 6.86 -2.39 -0.02 1.40 16 43 H 0.26 13.42 8.31 -92.71 -0.77 12.65 16 44 H 0.05 1.40 8.10 -2.39 -0.02 1.38 16 45 H 0.05 1.35 8.10 -2.39 -0.02 1.33 16 46 H 0.06 0.88 4.81 -2.39 -0.01 0.87 16 47 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 48 H 0.07 0.82 6.43 -2.39 -0.02 0.80 16 Total: -1.00 -61.05 352.37 4.70 -56.35 By element: Atomic # 1 Polarization: 20.81 SS G_CDS: 0.41 Total: 21.21 kcal Atomic # 6 Polarization: -26.20 SS G_CDS: 4.36 Total: -21.83 kcal Atomic # 7 Polarization: -72.77 SS G_CDS: -2.05 Total: -74.82 kcal Atomic # 8 Polarization: -25.74 SS G_CDS: -0.05 Total: -25.79 kcal Atomic # 14 Polarization: 42.85 SS G_CDS: 2.03 Total: 44.88 kcal Total: -61.05 4.70 -56.35 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000458048306.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.281 kcal (2) G-P(sol) polarization free energy of solvation -61.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.346 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds