Wall clock time and date at job start Tue Mar 31 2020 05:31:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08994 * 109.47386 * 2 1 4 4 C 1.53003 * 109.46618 * 240.00386 * 2 1 3 5 5 C 1.53005 * 109.46872 * 179.97438 * 4 2 1 6 6 C 1.53003 * 109.47221 * 60.00058 * 5 4 2 7 7 H 1.09001 * 109.46811 * 60.00127 * 6 5 4 8 8 C 1.50697 * 109.46949 * 180.02562 * 6 5 4 9 9 O 1.21275 * 120.00064 * 120.00120 * 8 6 5 10 10 N 1.34782 * 120.00142 * 299.99847 * 8 6 5 11 11 C 1.46491 * 119.99992 * 180.02562 * 10 8 6 12 12 C 1.52998 * 109.47124 * 180.02562 * 11 10 8 13 13 C 1.52994 * 109.47492 * 59.99348 * 12 11 10 14 14 C 1.53000 * 109.47004 * 299.99394 * 12 11 10 15 15 C 1.50699 * 109.47261 * 179.97438 * 12 11 10 16 16 H 1.07998 * 120.00226 * 357.70744 * 15 12 11 17 17 C 1.37876 * 120.00295 * 177.70496 * 15 12 11 18 18 N 1.31514 * 120.00507 * 195.66904 * 17 15 12 19 19 Si 1.86804 * 119.99737 * 15.94607 * 17 15 12 20 20 H 1.48507 * 109.47125 * 84.26422 * 19 17 15 21 21 H 1.48498 * 109.46993 * 204.25998 * 19 17 15 22 22 H 1.48500 * 109.47164 * 324.26073 * 19 17 15 23 23 C 1.52998 * 109.47024 * 300.00096 * 6 5 4 24 24 C 1.52998 * 109.47169 * 120.00782 * 2 1 3 25 25 H 1.08994 * 109.47524 * 59.99903 * 24 2 1 26 26 C 1.53003 * 109.47027 * 299.99353 * 24 2 1 27 27 H 1.09001 * 109.47636 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47131 * 299.99348 * 1 2 3 29 29 H 1.09001 * 109.47347 * 59.99613 * 1 2 3 30 30 H 1.09001 * 109.47261 * 59.99948 * 4 2 1 31 31 H 1.08994 * 109.47417 * 299.99694 * 4 2 1 32 32 H 1.09002 * 109.47068 * 299.99415 * 5 4 2 33 33 H 1.09000 * 109.46683 * 180.02562 * 5 4 2 34 34 H 0.96997 * 119.99729 * 0.02562 * 10 8 6 35 35 H 1.09001 * 109.47381 * 59.99744 * 11 10 8 36 36 H 1.09008 * 109.47156 * 299.99528 * 11 10 8 37 37 H 1.09004 * 109.47231 * 179.97438 * 13 12 11 38 38 H 1.08994 * 109.47411 * 300.00112 * 13 12 11 39 39 H 1.09008 * 109.47056 * 60.00655 * 13 12 11 40 40 H 1.09003 * 109.47184 * 309.32114 * 14 12 11 41 41 H 1.08996 * 109.46997 * 69.31963 * 14 12 11 42 42 H 1.09000 * 109.47294 * 189.32183 * 14 12 11 43 43 H 0.96998 * 120.00652 * 180.02562 * 18 17 15 44 44 H 1.09001 * 109.47135 * 180.02562 * 23 6 5 45 45 H 1.09002 * 109.47084 * 300.00433 * 23 6 5 46 46 H 1.09002 * 109.46966 * 60.00387 * 26 24 2 47 47 H 1.08997 * 109.47089 * 179.97438 * 26 24 2 48 48 H 1.08994 * 109.46927 * 300.00415 * 26 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 3.5699 -0.7207 -1.2497 6 6 4.0805 -1.4417 -0.0005 7 1 3.7175 -2.4695 -0.0004 8 6 5.5875 -1.4406 -0.0007 9 8 6.1936 -0.9151 0.9089 10 7 6.2618 -2.0236 -1.0116 11 6 7.7267 -2.0230 -1.0114 12 6 8.2371 -2.7432 -2.2611 13 6 7.7269 -2.0214 -3.5099 14 6 7.7278 -4.1859 -2.2621 15 6 9.7441 -2.7420 -2.2612 16 1 10.2838 -2.2424 -1.4704 17 6 10.4339 -3.3788 -3.2709 18 7 11.7127 -3.6493 -3.1248 19 14 9.5541 -3.8506 -4.8498 20 1 9.5325 -2.6863 -5.7714 21 1 10.2689 -4.9803 -5.4963 22 1 8.1614 -4.2603 -4.5370 23 6 3.5706 -0.7205 1.2487 24 6 2.0400 -0.7214 1.2491 25 1 1.6767 -1.7490 1.2491 26 6 1.5301 -0.0002 2.4985 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5137 0.8901 29 1 -0.3634 0.5139 -0.8899 30 1 1.6765 -0.2073 -2.1393 31 1 1.6766 -1.7488 -1.2494 32 1 3.9329 0.3071 -1.2500 33 1 3.9331 -1.2341 -2.1400 34 1 5.7770 -2.4436 -1.7392 35 1 8.0901 -2.5369 -0.1215 36 1 8.0896 -0.9951 -1.0112 37 1 8.0910 -2.5342 -4.4002 38 1 6.6370 -2.0219 -3.5100 39 1 8.0899 -0.9935 -3.5092 40 1 7.9490 -4.6500 -1.3009 41 1 6.6507 -4.1908 -2.4286 42 1 8.2210 -4.7448 -3.0574 43 1 12.1981 -4.0970 -3.8353 44 1 3.9347 -1.2339 2.1387 45 1 3.9335 0.3073 1.2485 46 1 0.4401 -0.0002 2.4985 47 1 1.8931 -0.5144 3.3884 48 1 1.8935 1.0274 2.4985 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000458048307.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:02 Heat of formation + Delta-G solvation = -66.049554 kcal Electronic energy + Delta-G solvation = -23273.114999 eV Core-core repulsion = 20133.842672 eV Total energy + Delta-G solvation = -3139.272328 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.18387 -38.42707 -36.65508 -33.62711 -32.96074 -32.14018 -31.41225 -27.77534 -26.62646 -26.36191 -25.39382 -24.69979 -22.16033 -21.87617 -19.92218 -19.67131 -19.09721 -16.83589 -16.09923 -15.60554 -15.23760 -15.03626 -14.88270 -14.43034 -14.33093 -14.06644 -13.73275 -13.23554 -12.94557 -12.77889 -12.61754 -12.49598 -12.23496 -12.20397 -12.06270 -12.02463 -11.91432 -11.58831 -11.30450 -11.11393 -10.99380 -10.65871 -10.45421 -10.38689 -10.33587 -10.16426 -10.10354 -10.03958 -9.36929 -9.10764 -8.69879 -8.50193 -8.41017 -6.15906 -4.12091 3.01434 3.22964 3.30617 3.37434 3.66169 4.35081 4.45486 4.47983 4.56716 4.84101 4.92351 5.10727 5.14777 5.15775 5.26536 5.27830 5.34736 5.40382 5.52631 5.58937 5.62306 5.68432 5.76591 5.80287 5.85014 5.87648 5.97595 6.04881 6.06642 6.07039 6.11962 6.17276 6.25118 6.36119 6.39334 6.50242 6.53276 6.63615 6.70252 6.81300 6.98648 7.23320 7.43058 7.72528 7.98469 8.44518 8.65820 8.90492 9.48717 10.97227 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.034253 B = 0.003649 C = 0.003414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 817.256002 B = 7672.464456 C = 8200.595377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.089 4.089 3 H 0.070 0.930 4 C -0.112 4.112 5 C -0.111 4.111 6 C -0.107 4.107 7 H 0.092 0.908 8 C 0.508 3.492 9 O -0.549 6.549 10 N -0.722 5.722 11 C 0.142 3.858 12 C 0.029 3.971 13 C -0.145 4.145 14 C -0.144 4.144 15 C -0.515 4.515 16 H 0.076 0.924 17 C 0.076 3.924 18 N -0.890 5.890 19 Si 0.878 3.122 20 H -0.285 1.285 21 H -0.304 1.304 22 H -0.245 1.245 23 C -0.092 4.092 24 C -0.087 4.087 25 H 0.069 0.931 26 C -0.148 4.148 27 H 0.053 0.947 28 H 0.057 0.943 29 H 0.052 0.948 30 H 0.064 0.936 31 H 0.063 0.937 32 H 0.068 0.932 33 H 0.067 0.933 34 H 0.395 0.605 35 H 0.062 0.938 36 H 0.060 0.940 37 H 0.041 0.959 38 H 0.028 0.972 39 H 0.052 0.948 40 H 0.047 0.953 41 H 0.022 0.978 42 H 0.058 0.942 43 H 0.265 0.735 44 H 0.069 0.931 45 H 0.069 0.931 46 H 0.056 0.944 47 H 0.054 0.946 48 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.058 4.560 3.969 23.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.108 4.108 3 H 0.089 0.911 4 C -0.149 4.149 5 C -0.149 4.149 6 C -0.128 4.128 7 H 0.110 0.890 8 C 0.294 3.706 9 O -0.427 6.427 10 N -0.373 5.373 11 C 0.019 3.981 12 C 0.028 3.972 13 C -0.202 4.202 14 C -0.201 4.201 15 C -0.553 4.553 16 H 0.094 0.906 17 C -0.126 4.126 18 N -0.526 5.526 19 Si 0.710 3.290 20 H -0.213 1.213 21 H -0.232 1.232 22 H -0.171 1.171 23 C -0.130 4.130 24 C -0.105 4.105 25 H 0.087 0.913 26 C -0.206 4.206 27 H 0.072 0.928 28 H 0.076 0.924 29 H 0.071 0.929 30 H 0.083 0.917 31 H 0.082 0.918 32 H 0.087 0.913 33 H 0.086 0.914 34 H 0.230 0.770 35 H 0.080 0.920 36 H 0.078 0.922 37 H 0.059 0.941 38 H 0.047 0.953 39 H 0.071 0.929 40 H 0.066 0.934 41 H 0.041 0.959 42 H 0.076 0.924 43 H 0.074 0.926 44 H 0.087 0.913 45 H 0.088 0.912 46 H 0.075 0.925 47 H 0.073 0.927 48 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -22.410 4.858 4.550 23.378 hybrid contribution -0.401 -0.515 -1.404 1.548 sum -22.811 4.343 3.146 23.433 Atomic orbital electron populations 1.21891 0.95449 1.01703 1.01560 1.21197 0.95236 0.99780 0.94546 0.91144 1.21587 0.94868 1.00854 0.97624 1.21531 0.95841 1.01212 0.96309 1.21347 0.92267 1.01675 0.97535 0.88958 1.20574 0.89622 0.78308 0.82107 1.90670 1.70466 1.45436 1.36112 1.46335 1.08972 1.57528 1.24472 1.21485 0.76466 1.00671 0.99468 1.18703 0.96978 0.91346 0.90205 1.22308 0.97482 1.01009 0.99387 1.22347 0.97146 0.99012 1.01608 1.20719 0.87655 1.35725 1.11153 0.90602 1.24962 0.94711 0.94414 0.98536 1.69967 1.09169 1.40409 1.33102 0.87444 0.80283 0.77325 0.83912 1.21276 1.23218 1.17106 1.21390 0.93785 1.01389 0.96452 1.21192 0.95251 0.99587 0.94489 0.91277 1.21872 1.00760 1.00609 0.97320 0.92805 0.92442 0.92926 0.91725 0.91794 0.91333 0.91398 0.77000 0.91998 0.92159 0.94081 0.95323 0.92895 0.93419 0.95949 0.92371 0.92559 0.91272 0.91227 0.92530 0.92710 0.92682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.02 8.84 37.16 0.33 -0.69 16 2 C -0.09 -0.72 2.25 -90.62 -0.20 -0.92 16 3 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 4 C -0.11 -0.92 5.20 -26.73 -0.14 -1.06 16 5 C -0.11 -1.12 5.10 -26.73 -0.14 -1.25 16 6 C -0.11 -1.25 2.53 -91.77 -0.23 -1.48 16 7 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 8 C 0.51 8.23 7.15 -10.98 -0.08 8.16 16 9 O -0.55 -11.09 15.98 5.56 0.09 -11.00 16 10 N -0.72 -11.83 4.90 -60.30 -0.30 -12.12 16 11 C 0.14 2.87 4.49 -4.05 -0.02 2.85 16 12 C 0.03 0.63 0.50 -155.66 -0.08 0.55 16 13 C -0.14 -2.91 7.63 37.15 0.28 -2.63 16 14 C -0.14 -2.93 7.49 37.16 0.28 -2.65 16 15 C -0.51 -13.89 8.61 -34.44 -0.30 -14.18 16 16 H 0.08 2.25 7.99 -52.49 -0.42 1.83 16 17 C 0.08 2.13 5.29 -17.82 -0.09 2.04 16 18 N -0.89 -26.67 13.96 55.43 0.77 -25.90 16 19 Si 0.88 20.88 22.80 -169.99 -3.88 17.00 16 20 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 21 H -0.30 -7.39 7.11 56.52 0.40 -6.99 16 22 H -0.25 -5.27 4.61 56.52 0.26 -5.01 16 23 C -0.09 -1.05 3.77 -26.70 -0.10 -1.15 16 24 C -0.09 -0.76 2.25 -90.59 -0.20 -0.96 16 25 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 26 C -0.15 -1.19 8.84 37.16 0.33 -0.86 16 27 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 28 H 0.06 0.37 6.43 -51.93 -0.33 0.04 16 29 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 32 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.07 0.66 7.57 -51.93 -0.39 0.26 16 34 H 0.40 5.62 5.68 -40.82 -0.23 5.39 16 35 H 0.06 1.35 8.14 -51.93 -0.42 0.92 16 36 H 0.06 1.30 8.14 -51.92 -0.42 0.87 16 37 H 0.04 0.87 2.59 -51.93 -0.13 0.74 16 38 H 0.03 0.47 6.86 -51.93 -0.36 0.11 16 39 H 0.05 1.06 8.14 -51.92 -0.42 0.64 16 40 H 0.05 0.97 8.12 -51.93 -0.42 0.55 16 41 H 0.02 0.37 7.13 -51.93 -0.37 0.00 16 42 H 0.06 1.26 3.96 -51.93 -0.21 1.06 16 43 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 44 H 0.07 0.86 8.10 -51.93 -0.42 0.44 16 45 H 0.07 0.88 8.10 -51.93 -0.42 0.46 16 46 H 0.06 0.39 6.43 -51.93 -0.33 0.06 16 47 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 48 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 LS Contribution 349.51 15.07 5.27 5.27 Total: -1.00 -30.39 349.51 -7.22 -37.61 By element: Atomic # 1 Polarization: 12.21 SS G_CDS: -8.81 Total: 3.39 kcal Atomic # 6 Polarization: -13.88 SS G_CDS: -0.36 Total: -14.25 kcal Atomic # 7 Polarization: -38.50 SS G_CDS: 0.48 Total: -38.02 kcal Atomic # 8 Polarization: -11.09 SS G_CDS: 0.09 Total: -11.00 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -3.88 Total: 17.00 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -30.39 -7.22 -37.61 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000458048307.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.444 kcal (2) G-P(sol) polarization free energy of solvation -30.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.605 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds